mRNA_Ecto-sp8_S_contig11162.1529.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11162.1529.1
Unique NamemRNA_Ecto-sp8_S_contig11162.1529.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11162.1529.1 vs. uniprot
Match: A0A6H5KRH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.820e-12
Identity = 48/60 (80.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:  190 LQPAVVYSMQAPSRVQLPVHPWQQQQXXXXXXXXXXXXXXEHYYRGSPQQGGRGGWGGRG 369
            LQPAVVYSMQAPSRVQLPVHPWQQQQ      XXXXXXX EHY RGSPQ+ GR GW GRG
Sbjct:   29 LQPAVVYSMQAPSRVQLPVHPWQQQQPHYQQDXXXXXXXPEHY-RGSPQKSGRSGWVGRG 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11162.1529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRH2_9PHAE1.820e-1280.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11162contigEcto-sp8_S_contig11162:4143..4511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size370
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143198.2936928-CDS-Ecto-sp8_S_contig11162:4142..45111681143198.2936928-CDS-Ecto-sp8_S_contig11162:4142..4511Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11162 4143..4511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11162.1529.1prot_Ecto-sp8_S_contig11162.1529.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11162 4143..4511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11162.1529.1

>prot_Ecto-sp8_S_contig11162.1529.1 ID=prot_Ecto-sp8_S_contig11162.1529.1|Name=mRNA_Ecto-sp8_S_contig11162.1529.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=123bp
QQQGSQQVYISSGMAPAPMHQQQGANVTQQQQQPQMVTIATAPPGVVHQQ
AWAAAGQAGGGGGLQPAVVYSMQAPSRVQLPVHPWQQQQPHYQQDPQQPR
YQPEHYYRGSPQQGGRGGWGGRG
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mRNA from alignment at Ecto-sp8_S_contig11162:4143..4511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11162.1529.1 ID=mRNA_Ecto-sp8_S_contig11162.1529.1|Name=mRNA_Ecto-sp8_S_contig11162.1529.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=369bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11162:4143..4511+ (Ectocarpus species8 EcLAC_412)
CAGCAGCAAGGCTCTCAGCAGGTGTACATCAGCAGTGGCATGGCGCCCGC
GCCCATGCACCAACAACAGGGCGCAAACGTTACGCAACAACAGCAACAAC
CTCAGATGGTGACGATCGCCACGGCGCCGCCCGGGGTCGTCCACCAGCAG
GCTTGGGCGGCAGCAGGCCAGGCAGGAGGAGGGGGAGGCCTGCAGCCAGC
GGTCGTCTACTCGATGCAAGCCCCGTCGCGGGTTCAGCTGCCGGTGCACC
CATGGCAGCAGCAGCAACCGCACTACCAGCAGGATCCGCAACAGCCCCGA
TACCAGCCCGAGCACTACTACCGGGGTAGCCCTCAGCAGGGCGGAAGGGG
CGGCTGGGGCGGGAGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11162:4143..4511+

>mRNA_Ecto-sp8_S_contig11162.1529.1 ID=mRNA_Ecto-sp8_S_contig11162.1529.1|Name=mRNA_Ecto-sp8_S_contig11162.1529.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11162:4143..4511+ (Ectocarpus species8 EcLAC_412)
CAGCAGCAAGGCTCTCAGCAGGTGTACATCAGCAGTGGCATGGCGCCCGC
GCCCATGCACCAACAACAGGGCGCAAACGTTACGCAACAACAGCAACAAC
CTCAGATGGTGACGATCGCCACGGCGCCGCCCGGGGTCGTCCACCAGCAG
GCTTGGGCGGCAGCAGGCCAGGCAGGAGGAGGGGGAGGCCTGCAGCCAGC
GGTCGTCTACTCGATGCAAGCCCCGTCGCGGGTTCAGCTGCCGGTGCACC
CATGGCAGCAGCAGCAACCGCACTACCAGCAGGATCCGCAACAGCCCCGA
TACCAGCCCGAGCACTACTACCGGGGTAGCCCTCAGCAGGGCGGAAGGGG
CGGCTGGGGCGGGAGAGGC
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