mRNA_Ecto-sp8_S_contig11157.1523.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11157.1523.1
Unique NamemRNA_Ecto-sp8_S_contig11157.1523.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11157.1523.1 vs. uniprot
Match: A0A6H5KPH2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.300e-23
Identity = 145/207 (70.05%), Postives = 147/207 (71.01%), Query Frame = -2 
Query:    3 FDVPAGVAEGAGLVQWSRARGGGRQPPDCWADVGGASGALFGRSRNVLSLGNLQGAAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTVPACVPPAGQARSATGAAVPPVEISGDASGRDGGSRSRSXXXXXXXXXXXXXXXXXXXQRKAWGSETMPRQPPAEVDAVGEWGATSRSNHRPMLTDSGKGHG 623
            FDVPA  A G GLVQWSR RGGGRQPPDCWA+VGGAS ALFGRSR VLSLGNLQGAAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                         XXXXXXXXXXXXXXXXXXX  KA GSET P QPPA V A GEWGATS+SN RPM  DSGKG G
Sbjct:  294 FDVPA-AAGGGGLVQWSRDRGGGRQPPDCWANVGGASAALFGRSRKVLSLGNLQGAAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXKARGSETTPTQPPAGVHAAGEWGATSKSNLRPMPADSGKGFG 497
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BLAST of mRNA_Ecto-sp8_S_contig11157.1523.1 vs. uniprot
Match: D7FZN9_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN9_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.060e-6
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = -2 
Query:    9 MPRQPPAEVDAVGEWGATSRSNHRPMLTDSGKG 107
            MPRQPPA  DAVGEWGATSRSN RPM TDS KG
Sbjct:    1 MPRQPPAGGDAVGEWGATSRSNLRPMPTDSSKG 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11157.1523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPH2_9PHAE3.300e-2370.05Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FZN9_ECTSI2.060e-684.85Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11157contigEcto-sp8_S_contig11157:3426..4049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size625
Hectar predicted targeting categorysignal peptide
Exons1
Cds size624
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143197.8881185-CDS-Ecto-sp8_S_contig11157:3425..40491681143197.8881185-CDS-Ecto-sp8_S_contig11157:3425..4049Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11157 3426..4049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11157.1523.1prot_Ecto-sp8_S_contig11157.1523.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11157 3426..4049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11157.1523.1

>prot_Ecto-sp8_S_contig11157.1523.1 ID=prot_Ecto-sp8_S_contig11157.1523.1|Name=mRNA_Ecto-sp8_S_contig11157.1523.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=208bp
MPWPLPLSVSIGLWLLLLVAPHSPTASTSAGGCLGIVSDPQAFRCFSSCC
SSSCWRCCAPPTLLLRLLLPPSRPEASPLISTGGTAAPVADLACPAGGTQ
AGTVGSSAAAARPAAAAAAAVTTSRFRGGLLGGGTDTDSSAADAAVAAAA
IAAPCRFPSDRTFLDLPNRAPLAPPTSAQQSGGCRPPPRARDHCTRPAPS
ATPAGTSK
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mRNA from alignment at Ecto-sp8_S_contig11157:3426..4049+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11157.1523.1 ID=mRNA_Ecto-sp8_S_contig11157.1523.1|Name=mRNA_Ecto-sp8_S_contig11157.1523.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=624bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11157:3426..4049+ (Ectocarpus species8 EcLAC_412)
ATGCCGTGGCCCTTGCCGCTGTCTGTGAGCATCGGTCTATGGTTGCTTCT
GCTGGTAGCCCCCCACTCACCCACCGCGTCTACCTCCGCGGGCGGTTGCC
TCGGCATCGTCTCCGATCCCCAAGCCTTCCGTTGCTTCTCCTCCTGCTGC
TCGTCCTCGTGCTGGCGTTGCTGCGCGCCGCCAACGCTGCTGCTGCGGCT
CCTGCTTCCGCCATCACGGCCCGAAGCGTCGCCGCTGATTTCGACAGGCG
GGACTGCTGCACCGGTCGCGGATCTAGCTTGTCCGGCCGGTGGCACACAG
GCGGGCACAGTCGGCTCTTCTGCCGCTGCCGCTCGGCCGGCGGCGGCGGC
GGCGGCGGCGGTCACGACTTCCCGCTTTCGCGGCGGGCTACTCGGTGGCG
GCACCGACACGGACTCCTCCGCAGCCGACGCCGCCGTCGCGGCCGCCGCC
ATCGCCGCCCCCTGCAGGTTTCCGAGCGACAGGACGTTTCTCGACCTCCC
GAACAGGGCGCCGCTAGCGCCCCCGACGTCTGCCCAGCAGTCGGGTGGCT
GCCGCCCCCCTCCGCGAGCGCGAGACCACTGCACGAGGCCGGCACCCTCA
GCGACCCCGGCGGGGACGTCGAAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11157:3426..4049+

>mRNA_Ecto-sp8_S_contig11157.1523.1 ID=mRNA_Ecto-sp8_S_contig11157.1523.1|Name=mRNA_Ecto-sp8_S_contig11157.1523.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11157:3426..4049+ (Ectocarpus species8 EcLAC_412)
ATGCCGTGGCCCTTGCCGCTGTCTGTGAGCATCGGTCTATGGTTGCTTCT
GCTGGTAGCCCCCCACTCACCCACCGCGTCTACCTCCGCGGGCGGTTGCC
TCGGCATCGTCTCCGATCCCCAAGCCTTCCGTTGCTTCTCCTCCTGCTGC
TCGTCCTCGTGCTGGCGTTGCTGCGCGCCGCCAACGCTGCTGCTGCGGCT
CCTGCTTCCGCCATCACGGCCCGAAGCGTCGCCGCTGATTTCGACAGGCG
GGACTGCTGCACCGGTCGCGGATCTAGCTTGTCCGGCCGGTGGCACACAG
GCGGGCACAGTCGGCTCTTCTGCCGCTGCCGCTCGGCCGGCGGCGGCGGC
GGCGGCGGCGGTCACGACTTCCCGCTTTCGCGGCGGGCTACTCGGTGGCG
GCACCGACACGGACTCCTCCGCAGCCGACGCCGCCGTCGCGGCCGCCGCC
ATCGCCGCCCCCTGCAGGTTTCCGAGCGACAGGACGTTTCTCGACCTCCC
GAACAGGGCGCCGCTAGCGCCCCCGACGTCTGCCCAGCAGTCGGGTGGCT
GCCGCCCCCCTCCGCGAGCGCGAGACCACTGCACGAGGCCGGCACCCTCA
GCGACCCCGGCGGGGACGTCGAAA
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