mRNA_Ecto-sp8_S_contig11155.1520.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11155.1520.1
Unique NamemRNA_Ecto-sp8_S_contig11155.1520.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11155.1520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11155contigEcto-sp8_S_contig11155:794..2054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size352
Hectar predicted targeting categoryother localisation
Exons3
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143197.7385907-CDS-Ecto-sp8_S_contig11155:793..8581681143197.7385907-CDS-Ecto-sp8_S_contig11155:793..858Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11155 794..858 -
1681143197.7472253-CDS-Ecto-sp8_S_contig11155:1117..12181681143197.7472253-CDS-Ecto-sp8_S_contig11155:1117..1218Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11155 1118..1218 -
1681143197.7559307-CDS-Ecto-sp8_S_contig11155:1869..20541681143197.7559307-CDS-Ecto-sp8_S_contig11155:1869..2054Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11155 1870..2054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11155.1520.1prot_Ecto-sp8_S_contig11155.1520.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11155 794..2054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11155.1520.1

>prot_Ecto-sp8_S_contig11155.1520.1 ID=prot_Ecto-sp8_S_contig11155.1520.1|Name=mRNA_Ecto-sp8_S_contig11155.1520.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=117bp
GGRGHSRCQPIKSIRVVSSCEKKAHAQCSSKRTATKLGGTDGSMLDEVLE
AVLLRRDVTSSSSRITEARVECCFRRSFALSNLHRPVTGQKKNDLALRLQ
TSTESSSCRPAEPCRRR
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mRNA from alignment at Ecto-sp8_S_contig11155:794..2054-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11155.1520.1 ID=mRNA_Ecto-sp8_S_contig11155.1520.1|Name=mRNA_Ecto-sp8_S_contig11155.1520.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1261bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11155:794..2054- (Ectocarpus species8 EcLAC_412)
GGCGGGAGAGGTCATTCACGATGCCAACCAATCAAATCAATCCGAGTCGT
GAGCAGCTGCGAAAAGAAGGCACATGCGCAGTGCAGCTCGAAGAGAACGG
CCACGAAGCTGGGCGGAACGGATGGAAGCATGCTGGATGAGGTTCTCGAA
GCGGTTCTACTTCGACGTGACGTCACCAGTTCCAGGTCAGTTCAAGGCGC
TAGCGACGAAAACGGCGTGTATTCAGTACACCTGACAACAACGCTCGGGT
TAGCAGAAGGCCAACCGAACCAGTCAAGTTTTGAGAGGGAAGCACCTTCC
GACGCCGCGGACGTTCCCCACCAAACCCGTGTTTGTAGTGCCTGGGGGGG
TCCAGAGGCAGACTGACTACTCTGATAGTCGGGTCCCCGAGTCGACACTG
ATTCCATGCTCTTGCAGGACAGTGTACCCGCGAAGAGCAAAGAATGTCTC
CCCATGGGGATGGCTATTCCGACGAGGTAGGGAAACGCTTCTCTTTCGTT
TCGCGCAGATACAGCTCCAGGGATTTCAAAACAGGTTTGGACTGTTGAAA
CCGTTGACTCGGTTCTCTGTTGTTTGGCGTTCTTCAGGTGTAGCAACAAT
ACATCCCAGGAGCGGTCCAATAAGGTTGCCACTCATCTGAAACCCGAACG
TGTTGAACGTTTTATCATCGATTCATTCACGATCCTTTGGAGGGACGGAC
TGTCTCTCAACAGAAAGCTGAGCCACGACAAAACAGACCGGTGCTACAAA
AAAGAAAGCAATACCGGTATTTTCACTGACCCAGAGTACATTGTACCTCC
TACCTCCTCCGTGCTGGCCCGCTTCGCAATCGCTAGCTCTCGCATCACAG
AGGCACGGGTGGAATGCTGCTTCCGACGAAGTTTCGCTCTGTCCAACCTG
CATCGCCCCGTCACCGGCCAGAAAAAAAATGATTTAGGTATCGTACCCAA
CGCTTTGGTACGAAACAAAAAGAAAAGCTCAAGGAAGATTGAAAGAAAAC
GGAAGCGGCTTGGATCGAGACACACCGACATCTCCTGACGTTGAAGTCGT
GGTAAAGTGCGTGACCGGAAACAAATACGATAATGATGATGGGAGGACAG
AACAAAGCTGCTCACAGGTTTTCAACAAATGATCTGGTATGGCTCTCACC
GGCTTGTTTCTTCATTACCGCGCAACAACCGGTCCTCCCGCGTCAGCGCT
TCGGCTGCAAACATCAACCGAGAGCAGCAGCTGCCGTCCGGCGGAACCCT
GTAGACGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11155:794..2054-

>mRNA_Ecto-sp8_S_contig11155.1520.1 ID=mRNA_Ecto-sp8_S_contig11155.1520.1|Name=mRNA_Ecto-sp8_S_contig11155.1520.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11155:794..2054- (Ectocarpus species8 EcLAC_412)
GGCGGGAGAGGTCATTCACGATGCCAACCAATCAAATCAATCCGAGTCGT
GAGCAGCTGCGAAAAGAAGGCACATGCGCAGTGCAGCTCGAAGAGAACGG
CCACGAAGCTGGGCGGAACGGATGGAAGCATGCTGGATGAGGTTCTCGAA
GCGGTTCTACTTCGACGTGACGTCACCAGTTCCAGCTCTCGCATCACAGA
GGCACGGGTGGAATGCTGCTTCCGACGAAGTTTCGCTCTGTCCAACCTGC
ATCGCCCCGTCACCGGCCAGAAAAAAAATGATTTAGCGCTTCGGCTGCAA
ACATCAACCGAGAGCAGCAGCTGCCGTCCGGCGGAACCCTGTAGACGGCG
G
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