mRNA_Ecto-sp8_S_contig11144.1514.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11144.1514.1
Unique NamemRNA_Ecto-sp8_S_contig11144.1514.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11144.1514.1 vs. uniprot
Match: D7FMA2_ECTSI (Ribonucleoside-diphosphate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA2_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 2.460e-37
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 3 
Query:  228 MVRRRRATCAVVGMLASTSVVATGPPSAWTGYPQQPRGAPPQESDGARDASAAAARGWARSQSSRLREGAPRMEAGEESPPS 473
            MVRRRRATCAVVGMLASTSVVATGPPSAWTGYPQQPRGAPPQESDGARDASAAAARGWARSQSSRLREGAPRMEA EES PS
Sbjct:    1 MVRRRRATCAVVGMLASTSVVATGPPSAWTGYPQQPRGAPPQESDGARDASAAAARGWARSQSSRLREGAPRMEAEEESAPS 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11144.1514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMA2_ECTSI2.460e-3797.56Ribonucleoside-diphosphate reductase n=2 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11144contigEcto-sp8_S_contig11144:3200..5352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score145.6
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog2880.D7FMA2
Preferred nameRNR1
Model size492
KEGG rclassRC00613,RC01003
KEGG koko:K10807
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,map00230,map00240,map00480,map00983,map01100
KEGG ModuleM00053
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004550,GO:0004748,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005971,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006235,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016491,GO:0016725,GO:0016728,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046075,GO:0046131,GO:0046385,GO:0046483,GO:0046704,GO:0046939,GO:0051063,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
Exons2
EggNOG free text desc.ribonucleoside-diphosphate reductase activity
EggNOG OGsCOG0209@1,KOG1112@2759
EC1.17.4.1
Cds size264
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143197.3388252-UTR-Ecto-sp8_S_contig11144:3199..34261681143197.3388252-UTR-Ecto-sp8_S_contig11144:3199..3426Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11144 3200..3426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143197.350104-CDS-Ecto-sp8_S_contig11144:3426..35281681143197.350104-CDS-Ecto-sp8_S_contig11144:3426..3528Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11144 3427..3528 +
1681143197.3588583-CDS-Ecto-sp8_S_contig11144:5190..53521681143197.3588583-CDS-Ecto-sp8_S_contig11144:5190..5352Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11144 5191..5352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11144.1514.1prot_Ecto-sp8_S_contig11144.1514.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11144 3427..5352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11144.1514.1

>prot_Ecto-sp8_S_contig11144.1514.1 ID=prot_Ecto-sp8_S_contig11144.1514.1|Name=mRNA_Ecto-sp8_S_contig11144.1514.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=88bp
MVRRRRATCAVVGMLASTSVVATGPPSAWTGYPQQPRGAPPQESDGARDA
SAAAARGWARSQSSRLREGAPRMEAGEESPPSSQPRSS
back to top

mRNA from alignment at Ecto-sp8_S_contig11144:3200..5352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11144.1514.1 ID=mRNA_Ecto-sp8_S_contig11144.1514.1|Name=mRNA_Ecto-sp8_S_contig11144.1514.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11144:3200..5352+ (Ectocarpus species8 EcLAC_412)
AGCAGCACTGACTGTCAGCAGAGGTTTGCGAAGCAGCCAACAAAGAGAGC
TTCAAAAGGGACGCAGCTAGCGACTGAGAGCTACCAAGCCACCAGAACGT
GCTGGCAAGTCACGTCTTGCGCTTCATGCAGTAGCATAGACTACGAGCTG
CTGGATACTTTGGCGCACCAGTAGGCGAGGCCGCCGCACACAGCCGACAT
CGATCGTAGAGAGACAGCTGGGAGAGCATGGTCAGGCGGAGAAGGGCGAC
ATGCGCCGTGGTCGGGATGCTAGCGTCCACGTCTGTGGTGGCGACTGGAC
CGCCGTCGGCATGGACTGGGTATCCACAGGTACACCCTCTGGCCCGTTGT
TGCAATATGTATGGCACATCAACCTGCTGCCACTCAGTTCAAACACCGCC
GCCGCTGCGCCCTCTCAGCCAACATCATATTCGTTAACTCTCGTGTGACC
CTGTATCCGAAGAATACAGCGGTTGTGGGCGACCTGTGTCTACACACAGG
TGGGATTACGTTGTTGTGTGTAGAGAGGAGGGTCATGAACGAGACCTCAG
GAATTTGATGGACATTTTTCGTGACACAGCAGTAGAAGCACGGCAGCCGT
AGAGACCTCCGCGGGGCACAGACTCAAAGGCCTGTGGTTTTAGCCACCAT
ATATGAGTCATGGCCCCACTACATGTGTGCTTAGCCGGCTGCCGCTGCTG
TGCCTGGAGTGCAGCAGGTTCGATAGGCACTTCGTGTCGCCAGTCTTTCT
AGGACTGATTTCCACTACTCGATAATGTGTGCCTCTACGGTTGTTGTGTA
CGGTCTGTGTAGCACGCCTGCGTAGCACTGCCTGGACGACGCTCCCGCTG
CGTGACTTGTGTGCGTACCATTGTTGACCGCTGGATTGGTTGTTGCGTGG
AGGTTGGACGTTGGGCAACGGGGACGCTCGTTGTGTTCAACCTGCAACAG
AGCCATGTCTCAGCTTGCTACCGGAGCGGAAGTATGTTGAGCGAAATGTC
TTGGTTGTCACCCAGTTAGCCGGAGGACCCAACAGAACGAAAAGCAGGTG
GAGCAGAGGCGGGGTGTTTATTTCTTGTTTTATCTTGCGTAAGTCACGTT
TCGACACCCAGCAACCGAGCGAGCAGATCTCCCAATGATGCTGCTTTTTG
GAACCTTAACCTTCCCCTGCTTGCAAACAACTACCACCCTTTTGGTGTGC
TTCCGTGGGCCAGCCCCCCTGGTCCACTTTTGACCTGAAGAAAAAAATAC
AAAAACGGTGAGACCACCCCCGTGTGTCCGCACATCCTCCGCACATATGT
ATACCAAATTGACGATACGTTTGGAAACTGATGGAGCTTGCACGCTCTAC
AATATAACAGGGTGCCACACACAAAACGCCCGACTAACCAACAGCCCCCA
AATCTTCCGTCTACACCTTCCCAACATAGCATATATGAGACACACAAGAC
GGCTACCAAACCGTTTTGTTGAGCCTGTTACCCGCAGGGGAGGTGTCACT
ATATGCTGTCTGGGAAATCGTAGACATACAGTTAGCTTTCTCTGAAGCTA
TGAATTCATTGCTAATCTGTCTCTGACTCTTTTCTGTGATAGAGATGGAT
TCGTTGTGTCATATTAAGAAAAATAAAAGAACATGGTCCTGCGGGTAGAT
ATGCACATCAAGCAAGGGTGACTTTGCCATAGCAGCATCGAAAAACAGGC
GGCATAAACGGCGACAAAGCCAGCCCGGCCCCCCCTACCCTCTCCAGAGT
ACCGGGGCGGCATCTACTTTTTCTGGTCGTCATGTATTGTAAATCTAACA
ACCCATCCAACAATCCAACCATCGCCATATCCCCGCAGTGCTCTGTATTC
CCCCGCCCTAAGGAAGCCAAAATCAAACCATGATTAGGCTATATAGTCAC
CGCTGACTAGTCTCATGGTTTGATTTCGGCTTCTTTAGCCTACAAGCCTT
TACCGAAGCCTCCCCTCTTTGCCCCTTGGTTTTCTTTCCAGCAACCGCGA
GGAGCCCCGCCACAAGAGAGCGACGGAGCACGGGACGCGTCAGCGGCGGC
AGCGAGAGGTTGGGCCCGAAGCCAATCCTCCCGGTTACGAGAGGGGGCTC
CGCGGATGGAGGCCGGGGAGGAGTCCCCCCCCTCCTCGCAGCCACGGAGC
AGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11144:3200..5352+

>mRNA_Ecto-sp8_S_contig11144.1514.1 ID=mRNA_Ecto-sp8_S_contig11144.1514.1|Name=mRNA_Ecto-sp8_S_contig11144.1514.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11144:3200..5352+ (Ectocarpus species8 EcLAC_412)
ATGGTCAGGCGGAGAAGGGCGACATGCGCCGTGGTCGGGATGCTAGCGTC
CACGTCTGTGGTGGCGACTGGACCGCCGTCGGCATGGACTGGGTATCCAC
AGCAACCGCGAGGAGCCCCGCCACAAGAGAGCGACGGAGCACGGGACGCG
TCAGCGGCGGCAGCGAGAGGTTGGGCCCGAAGCCAATCCTCCCGGTTACG
AGAGGGGGCTCCGCGGATGGAGGCCGGGGAGGAGTCCCCCCCCTCCTCGC
AGCCACGGAGCAGC
back to top