mRNA_Ecto-sp8_S_contig11135.1508.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11135.1508.1
Unique NamemRNA_Ecto-sp8_S_contig11135.1508.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11135.1508.1 vs. uniprot
Match: D7FKA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA1_ECTSI)

HSP 1 Score: 502 bits (1292), Expect = 4.520e-174
Identity = 284/367 (77.38%), Postives = 299/367 (81.47%), Query Frame = 3 
Query:  123 MLYTACFCTSPVLPSRSSPTSSAVVRRSSAKQAVDTPATPDQALPPRVVNDTGHRSIAKRDVRPQGTTMDATVAILASAQAVSAPKPQHMTKAEKRVAVDIVGRLETAIDSKDACDVPAVGLLTLSVKCAAINAALGSNKCCPAGAERLRELLSPLLAMWKTAKFVIRSSKEWVTPDHQAEAFNLIGLHLAECYKALKPTKTAADAAIFWPEVAPSKGLQDRTATFATLCQGKGETTT*QQXXXXXXXXXXXXXXXXXXXXXSPEKGRKSKAFFPYPCPHRLGSTSSGTGSGRTAAP--SDXXXXXXTAAHFRRPLLRRRHLHHLRSSPSPPPTPSLGARTSPPLGSRRCRGGSRSPRRRRRHWCRR 1217
            MLYTA  CTSPVLPSRSS T  AV RRSS +QAV+TPATPD AL PRVVND GHRSIAKRDVRPQGTTMDATVA+LAS Q +SAPKPQHMTK EKRVAVD+VGRL+TAID+KDACDVPAVGLL+LSVKCAAINAAL SNKCCP GAERLRELLSPLLAMWKTAKFVIRSSKEWVTPDHQA+AFNLIGLHLAEC+KAL P KTAA AAIFWPEVAPSKGLQDRTATFATLCQGKGETT  QQ                     SP+K  KSK FF YPC HR  +  +  G+   AAP    XXXXXX  AHFRRPLLRR HLH LR SPSPPPTPSLGARTSP LGSRRC+GG RSP RRR HWCRR
Sbjct:    1 MLYTAFICTSPVLPSRSSSTCRAVARRSSTQQAVNTPATPDLALLPRVVNDAGHRSIAKRDVRPQGTTMDATVAVLASVQVLSAPKPQHMTKTEKRVAVDVVGRLKTAIDAKDACDVPAVGLLSLSVKCAAINAALRSNKCCPTGAERLRELLSPLLAMWKTAKFVIRSSKEWVTPDHQAKAFNLIGLHLAECHKALLPIKTAAGAAIFWPEVAPSKGLQDRTATFATLCQGKGETTAKQQQLEGQLASSSASSPLS-----SPDKSSKSKVFFAYPCHHRSAAHQAALGA---AAPWXXXXXXXXXXXAHFRRPLLRRHHLHRLRPSPSPPPTPSLGARTSP-LGSRRCQGGPRSPTRRRPHWCRR 358
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BLAST of mRNA_Ecto-sp8_S_contig11135.1508.1 vs. uniprot
Match: D7FK84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK84_ECTSI)

HSP 1 Score: 471 bits (1211), Expect = 1.620e-160
Identity = 253/298 (84.90%), Postives = 258/298 (86.58%), Query Frame = 3 
Query:  123 MLYTACFCTSPVLPSRSSPTSSAVVRRSSAKQAVDTPATPDQALPPRVVNDTGHRSIAKRDVRPQGTTMDATVAILASAQAVSAPKPQHMTKAEKRVAVDIVGRLETAIDSKDACDVPAVGLLTLSVKCAAINAALGSNKCCPAGAERLRELLSPLLAMWKTAKFVIRSSKEWVTPDHQAEAFNLIGLHLAECYKALKPTKTAADAAIFWPEVAPSKGLQDRTATFATLCQGKGETTT*QQXXXXXXXXXXXXXXXXXXXXXSPEKGRKSKAFFPYPCPHRLGSTSSGTGSGRTAAPS 1016
            MLYTA FCTSPVLPSRSSPTSSAVVRRSS +QAVDTPATPDQALPPRVVNDTGHRSIAK DVRP+GTTMDAT AILASAQAVSAPKPQHMTKAEKRV V IVGRL+TAID+KDACDVPAVGLLTLSVKCAAINAAL SNKCCPAGAERLRELLSPLLAMWKTAKFVIR SKEWVTPDHQAEAFNLIGLHLAECYKALKPTKTAA AAIFWPEVAPSKGLQDRTATFA LCQGKGETT  QQ                     SP+K  KSK FF YPC HRLGSTSS TGSGRT APS
Sbjct:    1 MLYTAFFCTSPVLPSRSSPTSSAVVRRSSVQQAVDTPATPDQALPPRVVNDTGHRSIAKHDVRPRGTTMDATDAILASAQAVSAPKPQHMTKAEKRVTVIIVGRLKTAIDAKDACDVPAVGLLTLSVKCAAINAALRSNKCCPAGAERLRELLSPLLAMWKTAKFVIRGSKEWVTPDHQAEAFNLIGLHLAECYKALKPTKTAAGAAIFWPEVAPSKGLQDRTATFAALCQGKGETTAKQQQLEGQLASSSASSPLS-----SPDKSGKSKVFFAYPCHHRLGSTSSSTGSGRTVAPS 293
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BLAST of mRNA_Ecto-sp8_S_contig11135.1508.1 vs. uniprot
Match: D8LM82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM82_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 2.050e-35
Identity = 97/202 (48.02%), Postives = 124/202 (61.39%), Query Frame = 3 
Query:  387 HMTKAEKRVAVDIVGRLETAIDSKDACDVPAVGLLTLSVKCAAINAALGSN-KCCPAGAERLRELLSPLLAMWKTAKFVIRSSKEWVTPDHQAEAFNLIGLHLAECYKALKPTKTAADAAIFWPEVAPSKGLQDRTATFATLCQGKGETTT*QQXXXXXXXXXXXXXXXXXXXXXSPEK-GRKSKAFFPYPC-PHRLGSTSS 983
             ++KA + +A +IVGRL TAI++ DACD+PA GLL +S KCAA+ A LGS+ K CP   +RL ELLS L +MW   K VIR+S EWV+   Q EA +L GLHLA  +  L+  K +   A FWPEV  ++ LQ RTA F   C  KGE  + +Q XXXXXXXXX           SP +  R +K+F P  C P   G T+S
Sbjct:   74 RISKAGRSIAANIVGRLRTAIETGDACDMPAAGLLDMSGKCAAMKARLGSSSKRCPTEVQRLTELLSSLFSMWANIKSVIRNSNEWVSLTDQKEAMDLFGLHLAHSHALLRNIKNSTSTASFWPEVETNEALQTRTARFTAKCILKGEVISNKQQXXXXXXXXXQGQLASPYSPSSPSRRDRTNKSFRPSACSPRHEGGTAS 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11135.1508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKA1_ECTSI4.520e-17477.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK84_ECTSI1.620e-16084.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LM82_ECTSI2.050e-3548.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11135contigEcto-sp8_S_contig11135:1376..4806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1451
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_003330.1
Cds size798
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11135.1508.1prot_Ecto-sp8_S_contig11135.1508.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11135 2053..4194 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143196.5877268-UTR-Ecto-sp8_S_contig11135:1375..14151681143196.5877268-UTR-Ecto-sp8_S_contig11135:1375..1415Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11135 1376..1415 +
1681143196.5967662-UTR-Ecto-sp8_S_contig11135:2051..20521681143196.5967662-UTR-Ecto-sp8_S_contig11135:2051..2052Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11135 2052..2052 +
1681143196.6430192-UTR-Ecto-sp8_S_contig11135:4194..48061681143196.6430192-UTR-Ecto-sp8_S_contig11135:4194..4806Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11135 4195..4806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143196.6053228-CDS-Ecto-sp8_S_contig11135:2052..22321681143196.6053228-CDS-Ecto-sp8_S_contig11135:2052..2232Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11135 2053..2232 +
1681143196.614247-CDS-Ecto-sp8_S_contig11135:2614..30181681143196.614247-CDS-Ecto-sp8_S_contig11135:2614..3018Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11135 2615..3018 +
1681143196.6230547-CDS-Ecto-sp8_S_contig11135:3331..34371681143196.6230547-CDS-Ecto-sp8_S_contig11135:3331..3437Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11135 3332..3437 +
1681143196.6316302-CDS-Ecto-sp8_S_contig11135:4086..41941681143196.6316302-CDS-Ecto-sp8_S_contig11135:4086..4194Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11135 4087..4194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11135.1508.1

>prot_Ecto-sp8_S_contig11135.1508.1 ID=prot_Ecto-sp8_S_contig11135.1508.1|Name=mRNA_Ecto-sp8_S_contig11135.1508.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=266bp
MKTMQRVLAKIFLGDADTGNDFARGFPMLYTACFCTSPVLPSRSSPTSSA
VVRRSSAKQAVDTPATPDQALPPRVVNDTGHRSIAKRDVRPQGTTMDATV
AILASAQAVSAPKPQHMTKAEKRVAVDIVGRLETAIDSKDACDVPAVGLL
TLSVKCAAINAALGSNKCCPAGAERLRELLSPLLAMWKTAKFVIRSSKEW
VTPDHQAEAFNLIGLHLAECYKALKPTKTAADAAIFWPEVAPSKGLQDRT
ATFATLCQGKGETTT*
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mRNA from alignment at Ecto-sp8_S_contig11135:1376..4806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11135.1508.1 ID=mRNA_Ecto-sp8_S_contig11135.1508.1|Name=mRNA_Ecto-sp8_S_contig11135.1508.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3431bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11135:1376..4806+ (Ectocarpus species8 EcLAC_412)
ACTACAACGCTCTTCTTCTAGAAATCACGTCAGAACCAAGGTGAGACGCC
AGGATATCGAAGTCGAGTTGAGACCACAGGCGTTCACGGAAGGCAACGAC
TGCCTTTCATGATGTGTCGATAGCAGGTCGACCCGACTGTTTGTGAGTGG
CATATAGAGGACGCGGATAATCTTTGTACATGTACCTCATCATGTCTCTC
TGCCTGTCCTTAGCCGCCCTCTCTTGTGAAACGAGTACAAGCACGTACAT
TCATGTATTCTCAAGGATGCCTTCTTCCTCGTGACTGGGCCAGCTCCCCG
TGTGCTGGTTGGGTCATATCCTGATTTGAGTCTAGACAACTGTAGATCCT
CGATCATCGCCTAATTAAAGCGAAGTTTGCTTCTTGAGAATGTACTGTAC
CACTGCTGTGTAATAGTTCCGAAAACCTGTCTCTCCATTAGTCTGTGGTG
CGTCTCGTTTAGGTTGCTTCGTGCTCACGTAGTAAGGTCGATCATGCTCC
TGGCCTCTCATCGTATGGGATTTGAGTCCTCCTGCAGAATAGGACACTAC
ACACCTCACAACGTTCACCAAAGCATTGCCCAATATTGCGATATGATAGC
AACATTTCAATTTACCCTTCACCCTCTCTCCGCCCTCTGCTTTTGTTCAT
GACCGAAACAAAACCCAATCGCACAGCATGAAAACTATGCAGAGAGTGCT
GGCGAAGATATTCCTTGGCGACGCCGACACGGGGAACGACTTTGCCAGAG
GGTTCCCCATGCTGTACACGGCTTGCTTCTGCACCTCTCCGGTGCTGCCA
TCAAGATCCTCACCGACAAGTTCAGCGGTGGTCCGTCGATCATCGGCGAA
ACAAGCGGTGATGAGACGTTTAGTGTGTAGACAAATACATTTGAATAATA
TAGGAAGAGACACGATATATTTTTCGGATGTATTGCTGTACTGTGTAGTT
TGGATGGTTGGTTTGTACAGTTGCGAGATTTGGTGATGTAGCGACCTGGA
TAATGACGATGGCGACCTAAGTAAGTAAGGTGCCCGACGTGCAGAACGCT
GTGTGAAGAACGGTGAACCCTCTCGTAAGGCCGTTCCCTGTAGATGCCAA
TCAATGCTGTTTGATCGTGAAACAAACATGATAAACCAAGCGGTGAACAC
AGACATGAGAAAATTGCTGTAAAATTGCTGTATTTTACAACATCTAATGA
CGCTTCCGAAACGAACGACACTCCCCCAACTGTATACAGGTGGACACCCC
TGCGACACCCGACCAGGCGTTACCGCCCCGCGTCGTCAATGACACCGGCC
ACCGTTCGATCGCGAAGCGTGATGTCCGCCCTCAGGGAACCACGATGGAC
GCTACGGTTGCGATCCTGGCGTCCGCGCAAGCCGTTTCGGCGCCCAAGCC
CCAACACATGACGAAGGCGGAGAAGCGAGTCGCCGTCGACATCGTCGGCC
GCCTCGAGACGGCGATAGACTCGAAGGATGCATGTGACGTTCCAGCGGTC
GGCCTACTTACCCTCTCGGTTAAGTGCGCTGCTATCAACGCAGCGTTGGG
CAGCAACAAGTGCTGCCCGGCCGGTGCGGAGCGCCTCCGGGAGCTCTTGT
CCCCCCTGCTGGCTATGTGGAAGACCGCCAAGTTTGTCATCCGGTGAGTT
GCTTGTTGAGTATGTTTGCCCGTGAACGGCCCTGGTGCCCTTCGAATGGA
CGGTGCTGTGTTTCTTTTTTTTGCTAAAGGGCGTGTACTCTGTGAAGAAC
GCGTTGAAGGGCGGGCCAACGCTTCCAATATTTGGAAACGTGGCGAAATC
TAGCCCTACACCGGAATATGTAGTTCATTCATTGAGGAAAAACTTGTTGG
TTCAGCAACAATGCAGGTTACCATGAGATGTTGCAGGTTGTACTACTGTG
ACCAACTGCAAGCACCCACCCTGCCGCCATCCGTGTATCCCCCCGGGCGA
CACCAGGAGCTCGAAGGAATGGGTTACCCCGGACCACCAGGCAGAGGCCT
TCAACCTAATCGGCCTCCACCTCGCCGAGTGCTACAAGGCACTCAAGCCA
ACCAAGACTGCGGTGAGAGCAGACGCGACGAATCCTTCAGGCGTGTGGAG
CTTGGTACCACACGTGCTGCCGCACGTTCAGACTCGTCGTGCTCGCGAAG
GCATGGCTCCCGTGTCACCCATCGTAGTGTTTTGTTTTTTGCTGTTTCCC
GGTACTCAAGCTGTCGGTATTGTACATACATGCCTTAGTGTGATTCGACC
CCCACCCACCTCCCCCCCCGTATTGACATTCCCTCCAACCAAACCGACCG
AGAGCAGGGACAATATTTGAGTTCCCTGGATACGTGATATTCTTCGAAGA
ACATATCCCTGCCCCTCCATTTTACATATTGTGCAGGATGTCCACCCCAG
TTAGTTTTTTCAGTTCCCACTGGTATTCATTCGCGATTGTTTCCGCACTC
ATCATCAATACATGTGTTTGGGGTGGATCAAGACGTCTGTCTGTGTTAGG
CGCTACAAGTGGGTACACCCGCTGCCGTTGTTGTTGGTCGGGATGATCTC
GTTAGACTCGGAATGAACGTTTTCGTCGCCAGGTCACACCCTGCACCACG
GAACGCCTCCATCTCGTTGCTGTTGGTTTTACTACAATACGTGGGATGAA
TTTCTTCTTTGTCTCAGGCCGGAAATCGATCTCCTTGATTTTGTCCCCCT
TGACCTTCCAGGCTGACGCGGCCATATTCTGGCCCGAGGTGGCCCCTAGC
AAAGGGCTGCAGGACAGGACCGCCACGTTCGCCACGCTGTGCCAAGGGAA
AGGCGAGACCACCACATAGCAGCAGCAGCAGCAGCAGCAGCAACCGGAGG
GGCAACTGGCCTCCTCCTCCGCCTCCTCTTCCCCCTCCTCTCCGGAGAAG
GGCCGCAAGAGCAAAGCCTTCTTTCCCTACCCTTGCCCCCACCGCCTCGG
CAGCACGTCAAGCGGCACTGGGAGCGGCCGCACCGCGGCCCCCTCGGACA
ACGACGACGACGACGCCACCGCGGCACACTTTCGCCGTCCTCTTCTTCGC
CGTCGCCATCTACACCATCTTCGTTCTTCTCCATCTCCTCCTCCCACGCC
TTCTCTGGGAGCGAGAACATCACCACCGTTAGGCAGTCGTCGTTGTCGAG
GTGGATCAAGATCGCCAAGAAGGAGGCGTCGACACTGGTGTCGACGCCGA
AGTCGGCCACCATCCGCTCGTCTTCTCGACAGGGGGTTGTGTCGCTGGGC
CGGCAGAGAAAACACGCCCCGGCCAAGGTTTCTGTGTCCCCGGGCGTGAT
GTTCGTGCCCTACCGCAGCCCGACCCGCCGCGCGAACCCGAGGGGCACGA
GCCTGCGCGGAAGCGGCGCGATCGCCGGTCGCAAGAGCCAGCTTTGACGA
GGGTGGCTTGAGGTGTAGAGCAGGCAGATGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11135:1376..4806+

>mRNA_Ecto-sp8_S_contig11135.1508.1 ID=mRNA_Ecto-sp8_S_contig11135.1508.1|Name=mRNA_Ecto-sp8_S_contig11135.1508.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11135:1376..4806+ (Ectocarpus species8 EcLAC_412)
ATGAAAACTATGCAGAGAGTGCTGGCGAAGATATTCCTTGGCGACGCCGA
CACGGGGAACGACTTTGCCAGAGGGTTCCCCATGCTGTACACGGCTTGCT
TCTGCACCTCTCCGGTGCTGCCATCAAGATCCTCACCGACAAGTTCAGCG
GTGGTCCGTCGATCATCGGCGAAACAAGCGGTGGACACCCCTGCGACACC
CGACCAGGCGTTACCGCCCCGCGTCGTCAATGACACCGGCCACCGTTCGA
TCGCGAAGCGTGATGTCCGCCCTCAGGGAACCACGATGGACGCTACGGTT
GCGATCCTGGCGTCCGCGCAAGCCGTTTCGGCGCCCAAGCCCCAACACAT
GACGAAGGCGGAGAAGCGAGTCGCCGTCGACATCGTCGGCCGCCTCGAGA
CGGCGATAGACTCGAAGGATGCATGTGACGTTCCAGCGGTCGGCCTACTT
ACCCTCTCGGTTAAGTGCGCTGCTATCAACGCAGCGTTGGGCAGCAACAA
GTGCTGCCCGGCCGGTGCGGAGCGCCTCCGGGAGCTCTTGTCCCCCCTGC
TGGCTATGTGGAAGACCGCCAAGTTTGTCATCCGGAGCTCGAAGGAATGG
GTTACCCCGGACCACCAGGCAGAGGCCTTCAACCTAATCGGCCTCCACCT
CGCCGAGTGCTACAAGGCACTCAAGCCAACCAAGACTGCGGCTGACGCGG
CCATATTCTGGCCCGAGGTGGCCCCTAGCAAAGGGCTGCAGGACAGGACC
GCCACGTTCGCCACGCTGTGCCAAGGGAAAGGCGAGACCACCACATAG
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