mRNA_Ecto-sp8_S_contig11131.1505.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Match: D7FK62_ECTSI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK62_ECTSI) HSP 1 Score: 325 bits (834), Expect = 1.230e-109 Identity = 165/181 (91.16%), Postives = 166/181 (91.71%), Query Frame = 1
Query: 10 ALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAMLGPLALPSKEPPAXXXXXXXXXXXXXXXXXXGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRGKGGEAPR 552
ALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSA+LGPLALPSKEPPA XXX GRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRGKGGEAPR
Sbjct: 170 ALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAVLGPLALPSKEPPAPTTTPSXXXSSGS-----GRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRGKGGEAPR 345
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Match: A0A6H5K3Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y3_9PHAE) HSP 1 Score: 171 bits (434), Expect = 2.270e-51 Identity = 97/174 (55.75%), Postives = 99/174 (56.90%), Query Frame = 1
Query: 10 ALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAMLGPLALPSKEPPAXXXXXXXXXXXXXXXXXXGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRG 531
ALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMR G KW RGSREVLARTF+PWA+RAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRG
Sbjct: 66 ALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRS------------------GGGGGGKW---------------------------------------------------RGSREVLARTFIPWAVRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRG 170
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Match: A0A835Z0M6_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M6_9STRA) HSP 1 Score: 169 bits (427), Expect = 2.510e-49 Identity = 86/171 (50.29%), Postives = 107/171 (62.57%), Query Frame = 1
Query: 13 LPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAMLGPLALPSKEPPAXXXXXXXXXXXXXXXXXXGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQ 525
LP GT GK+Y++FM N F+PD R PV++VDD DLAYVM RYR+VHDLWH L+GLP ++EGE+ALKWFE+VQTGLPV A+SA++G +P R R L + VPWAIRAGRR+ PL+ VWYE+ W+ L R L E APQ
Sbjct: 104 LPSGTFGKAYADFMAHNQFTPDSRLPVRFVDDADLAYVMARYRQVHDLWHVLSGLPPSLEGEIALKWFEMVQTGLPVAAISALVGAARVP----------------------------REGRAALRQKLVPWAIRAGRRSV-PLMNVWYERYWDMYLSNFREKLKFEPAPQ 245
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Match: A0A6T5QVX1_HETAK (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QVX1_HETAK) HSP 1 Score: 167 bits (424), Expect = 1.290e-48 Identity = 88/171 (51.46%), Postives = 105/171 (61.40%), Query Frame = 1
Query: 10 ALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAMLGPLALPSKEPPAXXXXXXXXXXXXXXXXXXGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAP 522
+LP GT G +Y FM N FSP+GR+PV++VDD +LAYV+ RYR+VHDLWHAL GLP TV GELALKW EL+QTGLPV ALSA GPLAL + R +L R ++PWA+RA R PL+CV YE W +PL VR LGV AP
Sbjct: 112 SLPRGTFGHAYYTFMDGNGFSPEGRAPVRFVDDAELAYVLLRYRQVHDLWHALFGLPPTVGGELALKWLELLQTGLPVAALSAAAGPLALAPAD----------------------------RALLRRVYLPWALRAHGALRAPLMCVRYEALWGEPLAAVRARLGVLPAP 254
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Match: W7U2W9_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2W9_9STRA) HSP 1 Score: 167 bits (422), Expect = 8.450e-48 Identity = 80/174 (45.98%), Postives = 114/174 (65.52%), Query Frame = 1
Query: 1 RQQALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAMLGPLALPSKEPPAXXXXXXXXXXXXXXXXXXGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAP 522
R + LP+GT G+ Y+ F+ + +SPD R+ V++VDD +LA+VM+RYR+VHD WH L GLP TV GELALKWFE+VQT LP+ A S ++GPL+L ++E R++L ++PWA+RA +AR PL+CVWYE+ +E+PLEL+R+ L + AP
Sbjct: 161 RLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQE----------------------------RKLLKEQYIPWAVRAAVKAR-PLMCVWYERSFEEPLELMRKRLQIVTAP 305
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Match: A0A8C4A801_9TELE (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4A801_9TELE) HSP 1 Score: 160 bits (406), Expect = 6.590e-46 Identity = 80/171 (46.78%), Postives = 110/171 (64.33%), Query Frame = 1
Query: 13 LPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAMLGPLALPSKEPPAXXXXXXXXXXXXXXXXXXGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQ 525
LPDG LG+ Y +F+++NN +PD R+ VK+VD+ +LAYVM+RYREVHDL H L G+P + GE+A+KWFE VQTGLP+C L A LGP+ L S+ ++L T PWA+R+G RAR ++ ++YE+RWEQ LE +RR+LG+E PQ
Sbjct: 110 LPDGCLGREYLSFLEDNNVTPDSRAEVKFVDNEELAYVMQRYREVHDLLHTLLGMPTNMLGEVAVKWFEAVQTGLPMCILGAALGPVRLSSRR----------------------------FQLLVNTLGPWALRSGNRAR-CVMSIFYERRWEQNLEELRRELGIEPPPQ 251
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Match: A0A091H8Y5_BUCRH (Uncharacterized protein (Fragment) n=2 Tax=Buceros rhinoceros silvestris TaxID=175836 RepID=A0A091H8Y5_BUCRH) HSP 1 Score: 157 bits (398), Expect = 1.380e-45 Identity = 77/174 (44.25%), Postives = 108/174 (62.07%), Query Frame = 1
Query: 1 RQQALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAMLGPLALPSKEPPAXXXXXXXXXXXXXXXXXXGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAP 522
R + LPDGTLG+ Y F+++N SPD R P K++DD +LAYV++RYRE+HDL H L G+P + GE+ +KWFE VQTGLP+C L AM GP+ L +++ +VLA VPWAIR+GR A ++ V+YE+RWEQP+E +R ++G+ P
Sbjct: 47 RLKELPDGTLGREYVRFLEDNKVSPDTRMPTKFIDDEELAYVIQRYREIHDLMHTLLGMPTNMLGEVVVKWFEAVQTGLPMCVLGAMFGPVRLSTRK----------------------------LQVLATELVPWAIRSGRNAS-CILNVYYEQRWEQPVESLREEIGIFPPP 191
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Match: UPI0005299C87 (ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Chlamydotis macqueenii TaxID=187382 RepID=UPI0005299C87) HSP 1 Score: 156 bits (394), Expect = 5.390e-45 Identity = 77/174 (44.25%), Postives = 108/174 (62.07%), Query Frame = 1
Query: 1 RQQALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAMLGPLALPSKEPPAXXXXXXXXXXXXXXXXXXGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAP 522
R + LPDGTLG+ Y F+++N SPD R P K+VDD +LAYV++RYREVHDL H L G+P + GE+ +KWFE VQTGLP+C L A+ GP+ L +++ +VLA +PWAIR+GR A ++ V+YE+RWEQP+E +R ++G+ P
Sbjct: 46 RLRGLPDGTLGREYVRFLEDNKVSPDTRMPPKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEVVVKWFEAVQTGLPMCVLGAVFGPIRLSARK----------------------------LQVLATELIPWAIRSGRNASF-ILNVYYEQRWEQPVESLREEIGIFPPP 190
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Match: A0A091H845_9AVES (Uncharacterized protein (Fragment) n=2 Tax=Cuculus canorus TaxID=55661 RepID=A0A091H845_9AVES) HSP 1 Score: 154 bits (390), Expect = 2.230e-44 Identity = 77/174 (44.25%), Postives = 105/174 (60.34%), Query Frame = 1
Query: 1 RQQALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAMLGPLALPSKEPPAXXXXXXXXXXXXXXXXXXGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAP 522
R Q LPDG LG+ Y F++EN SPD R P K+VDD +LAYV++RYREVHDL H L G+P + GE+ +KWFE +QTGLP+C L A GP+ L +++ VLA VPWAIR+GR A ++ ++YE+RWEQP+E +R ++G+ P
Sbjct: 47 RLQGLPDGVLGREYVRFLEENKVSPDTRMPPKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEIVVKWFEAIQTGLPMCVLGAAFGPVRLSAQK----------------------------LRVLATELVPWAIRSGRNAS-CVLNIYYEQRWEQPVESLREEIGIFPPP 191
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Match: A0A7L1KYT3_HIMHI (COQ4 protein (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L1KYT3_HIMHI) HSP 1 Score: 155 bits (392), Expect = 4.220e-44 Identity = 77/174 (44.25%), Postives = 107/174 (61.49%), Query Frame = 1
Query: 1 RQQALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAMLGPLALPSKEPPAXXXXXXXXXXXXXXXXXXGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAP 522
R + LPDGTLG+ Y F+++N SPD R P K+VDD +LAYV++RYREVHDL H L G+P + GE+ +KWFE +QTGLP+C L A GP+ L +++ +VLA VPWAIR+GR A ++ V+YE+RWEQP+E +R ++G+ P
Sbjct: 97 RLRGLPDGTLGREYVRFLEDNKVSPDTRMPPKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEVVVKWFEAIQTGLPMCVLGAAFGPVRLSTRK----------------------------LQVLATELVPWAIRSGRNAS-CILNVYYEQRWEQPVESLREEIGIFPPP 241 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11131.1505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig11131.1505.1 >prot_Ecto-sp8_S_contig11131.1505.1 ID=prot_Ecto-sp8_S_contig11131.1505.1|Name=mRNA_Ecto-sp8_S_contig11131.1505.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=185bp RQQALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHback to top mRNA from alignment at Ecto-sp8_S_contig11131:502..1905+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig11131.1505.1 ID=mRNA_Ecto-sp8_S_contig11131.1505.1|Name=mRNA_Ecto-sp8_S_contig11131.1505.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1404bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11131:502..1905+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11131:502..1905+ >mRNA_Ecto-sp8_S_contig11131.1505.1 ID=mRNA_Ecto-sp8_S_contig11131.1505.1|Name=mRNA_Ecto-sp8_S_contig11131.1505.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11131:502..1905+ (Ectocarpus species8 EcLAC_412)back to top |