mRNA_Ecto-sp8_S_contig11126.1497.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11126.1497.1
Unique NamemRNA_Ecto-sp8_S_contig11126.1497.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11126.1497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11126contigEcto-sp8_S_contig11126:1548..3855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1959
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_006890.1
Cds size1959
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143195.5072649-CDS-Ecto-sp8_S_contig11126:1547..27471681143195.5072649-CDS-Ecto-sp8_S_contig11126:1547..2747Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11126 1548..2747 -
1681143195.5279047-CDS-Ecto-sp8_S_contig11126:3096..38551681143195.5279047-CDS-Ecto-sp8_S_contig11126:3096..3855Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11126 3097..3855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11126.1497.1prot_Ecto-sp8_S_contig11126.1497.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11126 1548..3855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11126.1497.1

>prot_Ecto-sp8_S_contig11126.1497.1 ID=prot_Ecto-sp8_S_contig11126.1497.1|Name=mRNA_Ecto-sp8_S_contig11126.1497.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=653bp
MQLELEHLQRQYKWRVLLSDAEHLLSRPTNTNRTQDDSNIGLLRSETPRL
HRGLTLAQQQPHPKHQQQHQEEEQQRQRDSATNLAWKSLFFQHQEQPRSR
SPSPPLLATQCDPGLCVVGESMTSASSPTRGASPSPLDALSSPKRMATSR
RTTPLLANEGGAEAKPVYRGRMLQPQDECGPSPETGDSPVVRREDSPQQS
PGCHTTSSSFSDSSPNVYPSENGNSSSAGGPPTQGNPPPNGGSSPTLPFT
DEEVIVLEKPPSTSNEGASVPFSVSPEAAAAAAATAAAAFTPQPNEGRQF
HFEGSRSGGGRPILGKTSSSTSPLRPIPIPTAIAAASAQPGITQRIDNMV
GAGVDPASYEEKQGVHREGQQSQNHQSQTESNHCQSPFGAGAGAGAGAGA
GTSANTLATATKPASFQSVLLATEWMETEWKPLAVPRGTTKPPVQVVSYN
RPSTTVTGLQPIHPLPVFSDGNETPLRMVGAKISRDGATPANAAATIATT
DRTSSSPSAGRLWGGIVSGPTWGGGGAGRGGAERGQEGEGVSSPTPTLFS
SPNNHADGNDSENSFLLTTSGRGTCRIGVHSGNGMRPKGRRERGRRQSAV
RAGKSDATTVVKEEDAGDEREQSGRYSQSPPPSPTAWTPPTGTRSLFSGG
EV*
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mRNA from alignment at Ecto-sp8_S_contig11126:1548..3855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11126.1497.1 ID=mRNA_Ecto-sp8_S_contig11126.1497.1|Name=mRNA_Ecto-sp8_S_contig11126.1497.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2308bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11126:1548..3855- (Ectocarpus species8 EcLAC_412)
ATGCAGCTGGAGCTGGAGCACCTTCAACGACAATATAAATGGCGAGTGCT
TCTTAGCGACGCCGAACACTTGTTATCACGGCCGACAAACACCAACCGCA
CCCAAGATGACAGCAACATCGGGCTGCTCCGCTCAGAAACCCCACGGCTT
CATCGTGGCCTCACCCTCGCCCAACAACAACCACATCCGAAGCATCAGCA
GCAACATCAAGAAGAAGAACAACAACGACAACGAGACTCAGCAACCAACC
TTGCCTGGAAATCGCTCTTCTTCCAACACCAGGAGCAGCCGCGTTCGCGA
TCACCATCACCGCCGTTGTTGGCGACACAATGTGATCCCGGGTTGTGCGT
GGTGGGCGAATCGATGACATCGGCGTCGTCTCCCACGAGGGGTGCGTCGC
CATCACCGCTAGACGCTTTGTCGTCACCAAAGCGGATGGCGACATCGAGA
CGAACGACGCCTCTCCTCGCCAATGAGGGTGGTGCCGAAGCTAAACCTGT
TTACCGAGGAAGAATGCTGCAACCGCAAGACGAATGCGGGCCGTCGCCGG
AGACAGGGGATAGCCCGGTGGTGCGACGGGAAGACAGCCCTCAACAATCT
CCCGGATGCCATACCACCTCCTCATCTTTTTCGGACTCTTCGCCAAACGT
GTACCCCTCGGAGAATGGGAACTCGTCATCGGCGGGTGGCCCTCCAACCC
AGGGGAACCCACCTCCAAACGGGGGTTCTTCGCCGACACTTCCTTTCACT
GATGAAGAGGTGACAAAATCAAACCGACACCGCGAATATTTGTCGAGGGC
GTGATGCCTGCAGCTACTATTTCCTGTGCACTCTTGATCAGATATGTGCC
CACAAGGACGGAAATTTGGGCTCGTATCGTCTGCTTCTTCATACTGCTCG
TCCGTGATGAGTGCGAAACATCTGTCGTTAGTCGCTGAACCAATATTTTG
AACTGAGTTTTGTAATACTCTACGATGCACCACGTGTTCATGAGGGCAAG
CGTAGGACACACACCTCGTCACTCCCTCCACCGGCCCGCGTTTAGCTCGT
ATCGATACTGTCTGTTGTTGTCGCTCACTCGTACACACCTTCTATTCTTG
TATGGCAGGTCATCGTATTGGAGAAGCCGCCATCGACTTCGAACGAAGGC
GCCTCCGTTCCGTTCTCGGTATCACCAGAAGCAGCAGCCGCCGCAGCAGC
AACGGCAGCAGCTGCTTTCACCCCACAACCAAACGAAGGCCGACAATTCC
ATTTCGAGGGCAGCAGAAGTGGTGGAGGGCGGCCCATACTCGGCAAGACT
TCATCCTCGACGTCGCCACTCCGGCCGATTCCGATACCCACGGCGATCGC
CGCAGCCTCGGCTCAGCCTGGAATCACGCAGAGGATCGACAATATGGTCG
GAGCCGGCGTCGACCCTGCGTCCTACGAAGAAAAGCAGGGAGTGCACCGG
GAGGGGCAGCAGAGCCAGAACCACCAAAGCCAGACCGAGAGCAATCACTG
CCAGTCGCCCTTTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTG
GTACTTCGGCCAATACACTGGCAACAGCAACAAAGCCGGCATCGTTCCAG
TCGGTACTGCTGGCGACGGAATGGATGGAGACGGAATGGAAGCCGCTTGC
TGTGCCACGGGGAACCACCAAACCACCTGTACAAGTTGTCTCATACAACA
GGCCGTCGACGACGGTCACAGGGCTGCAACCGATTCACCCTCTTCCGGTA
TTCTCAGACGGCAACGAGACACCGCTCCGCATGGTCGGAGCCAAGATATC
CCGAGATGGTGCAACGCCTGCCAATGCTGCCGCTACCATTGCTACTACGG
ACCGCACATCATCGTCGCCGTCTGCAGGACGTTTGTGGGGGGGGATTGTG
AGTGGCCCAACGTGGGGAGGGGGCGGGGCGGGAAGAGGAGGGGCGGAACG
AGGACAAGAAGGGGAAGGAGTCTCATCGCCAACACCGACGCTGTTCTCGT
CCCCTAACAACCACGCCGACGGCAATGACAGCGAGAACTCTTTCTTGCTC
ACCACTAGCGGTAGAGGCACATGCAGAATTGGCGTGCACAGCGGCAACGG
GATGAGACCGAAAGGTCGGCGCGAAAGAGGAAGGCGGCAGAGCGCGGTTC
GTGCCGGGAAGAGTGACGCAACAACAGTGGTCAAGGAGGAGGACGCAGGC
GACGAGCGGGAGCAGTCGGGCCGATATTCCCAGTCTCCCCCGCCAAGCCC
TACCGCGTGGACGCCGCCCACTGGTACACGGTCACTTTTTTCGGGGGGGG
AAGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11126:1548..3855-

>mRNA_Ecto-sp8_S_contig11126.1497.1 ID=mRNA_Ecto-sp8_S_contig11126.1497.1|Name=mRNA_Ecto-sp8_S_contig11126.1497.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1959bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11126:1548..3855- (Ectocarpus species8 EcLAC_412)
ATGCAGCTGGAGCTGGAGCACCTTCAACGACAATATAAATGGCGAGTGCT
TCTTAGCGACGCCGAACACTTGTTATCACGGCCGACAAACACCAACCGCA
CCCAAGATGACAGCAACATCGGGCTGCTCCGCTCAGAAACCCCACGGCTT
CATCGTGGCCTCACCCTCGCCCAACAACAACCACATCCGAAGCATCAGCA
GCAACATCAAGAAGAAGAACAACAACGACAACGAGACTCAGCAACCAACC
TTGCCTGGAAATCGCTCTTCTTCCAACACCAGGAGCAGCCGCGTTCGCGA
TCACCATCACCGCCGTTGTTGGCGACACAATGTGATCCCGGGTTGTGCGT
GGTGGGCGAATCGATGACATCGGCGTCGTCTCCCACGAGGGGTGCGTCGC
CATCACCGCTAGACGCTTTGTCGTCACCAAAGCGGATGGCGACATCGAGA
CGAACGACGCCTCTCCTCGCCAATGAGGGTGGTGCCGAAGCTAAACCTGT
TTACCGAGGAAGAATGCTGCAACCGCAAGACGAATGCGGGCCGTCGCCGG
AGACAGGGGATAGCCCGGTGGTGCGACGGGAAGACAGCCCTCAACAATCT
CCCGGATGCCATACCACCTCCTCATCTTTTTCGGACTCTTCGCCAAACGT
GTACCCCTCGGAGAATGGGAACTCGTCATCGGCGGGTGGCCCTCCAACCC
AGGGGAACCCACCTCCAAACGGGGGTTCTTCGCCGACACTTCCTTTCACT
GATGAAGAGGTCATCGTATTGGAGAAGCCGCCATCGACTTCGAACGAAGG
CGCCTCCGTTCCGTTCTCGGTATCACCAGAAGCAGCAGCCGCCGCAGCAG
CAACGGCAGCAGCTGCTTTCACCCCACAACCAAACGAAGGCCGACAATTC
CATTTCGAGGGCAGCAGAAGTGGTGGAGGGCGGCCCATACTCGGCAAGAC
TTCATCCTCGACGTCGCCACTCCGGCCGATTCCGATACCCACGGCGATCG
CCGCAGCCTCGGCTCAGCCTGGAATCACGCAGAGGATCGACAATATGGTC
GGAGCCGGCGTCGACCCTGCGTCCTACGAAGAAAAGCAGGGAGTGCACCG
GGAGGGGCAGCAGAGCCAGAACCACCAAAGCCAGACCGAGAGCAATCACT
GCCAGTCGCCCTTTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCT
GGTACTTCGGCCAATACACTGGCAACAGCAACAAAGCCGGCATCGTTCCA
GTCGGTACTGCTGGCGACGGAATGGATGGAGACGGAATGGAAGCCGCTTG
CTGTGCCACGGGGAACCACCAAACCACCTGTACAAGTTGTCTCATACAAC
AGGCCGTCGACGACGGTCACAGGGCTGCAACCGATTCACCCTCTTCCGGT
ATTCTCAGACGGCAACGAGACACCGCTCCGCATGGTCGGAGCCAAGATAT
CCCGAGATGGTGCAACGCCTGCCAATGCTGCCGCTACCATTGCTACTACG
GACCGCACATCATCGTCGCCGTCTGCAGGACGTTTGTGGGGGGGGATTGT
GAGTGGCCCAACGTGGGGAGGGGGCGGGGCGGGAAGAGGAGGGGCGGAAC
GAGGACAAGAAGGGGAAGGAGTCTCATCGCCAACACCGACGCTGTTCTCG
TCCCCTAACAACCACGCCGACGGCAATGACAGCGAGAACTCTTTCTTGCT
CACCACTAGCGGTAGAGGCACATGCAGAATTGGCGTGCACAGCGGCAACG
GGATGAGACCGAAAGGTCGGCGCGAAAGAGGAAGGCGGCAGAGCGCGGTT
CGTGCCGGGAAGAGTGACGCAACAACAGTGGTCAAGGAGGAGGACGCAGG
CGACGAGCGGGAGCAGTCGGGCCGATATTCCCAGTCTCCCCCGCCAAGCC
CTACCGCGTGGACGCCGCCCACTGGTACACGGTCACTTTTTTCGGGGGGG
GAAGTTTGA
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