mRNA_Ecto-sp8_S_contig11125.1496.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11125.1496.1
Unique NamemRNA_Ecto-sp8_S_contig11125.1496.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11125.1496.1 vs. uniprot
Match: A0A6H5KXB8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXB8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.220e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 YLTTFLGVATSVSVLPPILRSVLPENVVNAPVSAPLDTVLAKAFPE 138
            YLTTFLGVATSVSVLPPILRSVLP+NVV  PVSAPLDTVLAKAFPE
Sbjct:  188 YLTTFLGVATSVSVLPPILRSVLPDNVVKVPVSAPLDTVLAKAFPE 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11125.1496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXB8_9PHAE2.220e-1793.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11125contigEcto-sp8_S_contig11125:5647..5799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score89.0
Seed ortholog evalue7.1e-16
Seed eggNOG ortholog2880.D7FRJ3
Model size153
KEGG koko:K09595
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.aspartic endopeptidase activity, intramembrane cleaving
EggNOG OGsKOG2443@1,KOG2443@2759
Cds size153
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143195.4703245-CDS-Ecto-sp8_S_contig11125:5646..57991681143195.4703245-CDS-Ecto-sp8_S_contig11125:5646..5799Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11125 5647..5799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11125.1496.1prot_Ecto-sp8_S_contig11125.1496.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11125 5647..5799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11125.1496.1

>prot_Ecto-sp8_S_contig11125.1496.1 ID=prot_Ecto-sp8_S_contig11125.1496.1|Name=mRNA_Ecto-sp8_S_contig11125.1496.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp
YLTTFLGVATSVSVLPPILRSVLPENVVNAPVSAPLDTVLAKAFPEARLS
*
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mRNA from alignment at Ecto-sp8_S_contig11125:5647..5799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11125.1496.1 ID=mRNA_Ecto-sp8_S_contig11125.1496.1|Name=mRNA_Ecto-sp8_S_contig11125.1496.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11125:5647..5799+ (Ectocarpus species8 EcLAC_412)
TACTTGACGACTTTTCTAGGCGTGGCGACGTCCGTGTCGGTGCTCCCGCC
CATCCTCCGCTCAGTCCTGCCGGAGAATGTGGTCAACGCGCCGGTTTCAG
CGCCTCTCGACACGGTGCTCGCGAAGGCGTTTCCCGAGGCAAGGCTATCG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11125:5647..5799+

>mRNA_Ecto-sp8_S_contig11125.1496.1 ID=mRNA_Ecto-sp8_S_contig11125.1496.1|Name=mRNA_Ecto-sp8_S_contig11125.1496.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11125:5647..5799+ (Ectocarpus species8 EcLAC_412)
TACTTGACGACTTTTCTAGGCGTGGCGACGTCCGTGTCGGTGCTCCCGCC
CATCCTCCGCTCAGTCCTGCCGGAGAATGTGGTCAACGCGCCGGTTTCAG
CGCCTCTCGACACGGTGCTCGCGAAGGCGTTTCCCGAGGCAAGGCTATCG
TGA
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