mRNA_Ecto-sp8_S_contig1112.1489.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1112.1489.1
Unique NamemRNA_Ecto-sp8_S_contig1112.1489.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1112.1489.1 vs. uniprot
Match: D8LPY5_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY5_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 3.220e-61
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 1 
Query:    1 YNPSTGQTTYQMYGAYNAANPMMAPQAQVPVQPQVYQQPPMQVPMGYMTQPQITAPMGQIPQMVPQXXXXXXXXXXXXXXXXXXXXXX-QQFAAPPGWQPMFDRSGRRYFYNPSTGQSVYPL 363
            YNPSTGQTTYQMYGAYNAANPMMAPQAQVPVQPQVYQQPPMQVPMGYMTQPQITAPMGQIPQMVPQXXXXXXXXXXXXXXXXXXXXXX QQFAAPPGWQPMFDRSGRRYFYNPSTGQSVYPL
Sbjct:    7 YNPSTGQTTYQMYGAYNAANPMMAPQAQVPVQPQVYQQPPMQVPMGYMTQPQITAPMGQIPQMVPQXXXXXXXXXXXXXXXXXXXXXXXQQFAAPPGWQPMFDRSGRRYFYNPSTGQSVYPL 128
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1112.1489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPY5_ECTSI3.220e-6199.18WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1112contigEcto-sp8_S_contig1112:15603..16715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-15_001650.1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143194.9868963-CDS-Ecto-sp8_S_contig1112:15602..158421681143194.9868963-CDS-Ecto-sp8_S_contig1112:15602..15842Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1112 15603..15842 -
1681143194.9964583-CDS-Ecto-sp8_S_contig1112:16589..167151681143194.9964583-CDS-Ecto-sp8_S_contig1112:16589..16715Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1112 16590..16715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1112.1489.1prot_Ecto-sp8_S_contig1112.1489.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1112 15603..16715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1112.1489.1

>prot_Ecto-sp8_S_contig1112.1489.1 ID=prot_Ecto-sp8_S_contig1112.1489.1|Name=mRNA_Ecto-sp8_S_contig1112.1489.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=122bp
YNPSTGQTTYQMYGAYNAANPMMAPQAQVPVQPQVYQQPPMQVPMGYMTQ
PQITAPMGQIPQMVPQIPQVPQIMPQLPQQQQPRQPQQQQFAAPPGWQPM
FDRSGRRYFYNPSTGQSVYPL*
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mRNA from alignment at Ecto-sp8_S_contig1112:15603..16715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1112.1489.1 ID=mRNA_Ecto-sp8_S_contig1112.1489.1|Name=mRNA_Ecto-sp8_S_contig1112.1489.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1113bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1112:15603..16715- (Ectocarpus species8 EcLAC_412)
TACAACCCGAGCACGGGGCAAACGACCTACCAGATGTACGGCGCCTATAA
CGCCGCCAACCCCATGATGGCCCCGCAGGCGCAGGTGCCTGTGCAGCCGC
AAGTGTACCAGCAGCCGCCGATGCAGGTGTGTGTGTGTGTGTGTGTGTAT
TTCTTATTAGCATCGACCCCGCTAACGGGCTGACCTTTGTGTGTGTATTC
CTGCTTGAAGTGGTAGTAGGTAACCGCTCGTCTCCTTCTCACGAGTTTTT
GGGGCAGTAGACAGTGGAACGCGTCCGACACAGCAGTTTCGGCTACAATC
GAATGACGCTGACAGGTATGAGGATCGTGGAGAAATATTGCAGTCTCTTT
ATTGTAAAACTTTCATGCCTAGGACGTGCTCCCTCTATGTATGTGTTTTG
TTTTCGTCCTATTTGTTATGGCGACATTCCCCCCATTTTTTGTGGTGAGA
CGTGTATGTAGAGTACTACGAAGTACACTTTTCAGTGTATTTTTTCGTAC
AACTACAACCATACAGGGTCACACAGGAGGACGCAAACACCGGGGCTTTT
TTTTTTTTTTTCGTGCCCTACCTTCCTCCTGCGGTTCTTGCTGATTTTTT
TTTATCGCGAGAAGGGTCCAGCCGTCCCTTTCCCTCGTCGACGGTGCTAA
CGCCGAAGTTTTGGTACTCACGAGAGCTTTTTCAGCTTCTTTTTTTCGCT
TTCACCCGGAAATTTGCAAATTTTCACCCCATGGGAGTTCGAACTCACGA
TCTCTGCGACTAGCGGTTTCGAAGTTACCACGAGACCACCAGAGCGACCG
GCTATGTATAGGAAAAATAAAACCGACAACGAGTATACTGCACGCCATCA
AATGCCCCCTGTGTTCCTCTCAGGTGCCGATGGGCTACATGACTCAGCCG
CAGATAACCGCGCCAATGGGACAGATCCCGCAGATGGTTCCGCAGATTCC
CCAGGTGCCCCAGATAATGCCGCAGCTGCCACAGCAACAGCAGCCGCGGC
AGCCGCAGCAGCAGCAGTTTGCGGCTCCCCCGGGTTGGCAGCCGATGTTC
GACCGCTCCGGGCGGCGATACTTTTATAACCCGTCTACGGGCCAGAGCGT
CTACCCGCTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1112:15603..16715-

>mRNA_Ecto-sp8_S_contig1112.1489.1 ID=mRNA_Ecto-sp8_S_contig1112.1489.1|Name=mRNA_Ecto-sp8_S_contig1112.1489.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1112:15603..16715- (Ectocarpus species8 EcLAC_412)
TACAACCCGAGCACGGGGCAAACGACCTACCAGATGTACGGCGCCTATAA
CGCCGCCAACCCCATGATGGCCCCGCAGGCGCAGGTGCCTGTGCAGCCGC
AAGTGTACCAGCAGCCGCCGATGCAGGTGCCGATGGGCTACATGACTCAG
CCGCAGATAACCGCGCCAATGGGACAGATCCCGCAGATGGTTCCGCAGAT
TCCCCAGGTGCCCCAGATAATGCCGCAGCTGCCACAGCAACAGCAGCCGC
GGCAGCCGCAGCAGCAGCAGTTTGCGGCTCCCCCGGGTTGGCAGCCGATG
TTCGACCGCTCCGGGCGGCGATACTTTTATAACCCGTCTACGGGCCAGAG
CGTCTACCCGCTCTAA
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