mRNA_Ecto-sp8_S_contig11082.1455.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11082.1455.1
Unique NamemRNA_Ecto-sp8_S_contig11082.1455.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11082.1455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11082contigEcto-sp8_S_contig11082:5832..6221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size312
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_007640.1
Cds size282
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143192.3584788-UTR-Ecto-sp8_S_contig11082:5831..58611681143192.3584788-UTR-Ecto-sp8_S_contig11082:5831..5861Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11082 5832..5861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143192.3701-CDS-Ecto-sp8_S_contig11082:5861..60051681143192.3701-CDS-Ecto-sp8_S_contig11082:5861..6005Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11082 5862..6005 +
1681143192.3775704-CDS-Ecto-sp8_S_contig11082:6083..62211681143192.3775704-CDS-Ecto-sp8_S_contig11082:6083..6221Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11082 6084..6221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11082.1455.1prot_Ecto-sp8_S_contig11082.1455.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11082 5862..6221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11082.1455.1

>prot_Ecto-sp8_S_contig11082.1455.1 ID=prot_Ecto-sp8_S_contig11082.1455.1|Name=mRNA_Ecto-sp8_S_contig11082.1455.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=94bp
MERLNPFSIQISSAVSLPGVKIEAESLQDHVKPTKFKLLELHCKPVYIRD
KAHFEHTTSFLVGQMDRHRLEDWMENSLLSVEVHDRYVCTWWT*
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mRNA from alignment at Ecto-sp8_S_contig11082:5832..6221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11082.1455.1 ID=mRNA_Ecto-sp8_S_contig11082.1455.1|Name=mRNA_Ecto-sp8_S_contig11082.1455.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=390bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11082:5832..6221+ (Ectocarpus species8 EcLAC_412)
CTTGAGCGAAAGCTCTTCTCGGACAAAGCAATGGAGCGCCTGAACCCTTT
CTCGATACAAATTTCATCGGCGGTATCGCTGCCGGGAGTAAAAATCGAAG
CCGAGTCACTCCAGGACCACGTGAAACCGACCAAATTCAAGCTTTTGGAG
CTTCACTGCAAGCCGGTATACATCGTATGCCGACCATTTCCGAAGGGTCC
CTTGGGCGAGTCACTTCATCCGCGCTTTTTGTGGACAGCGGGATCAGCCC
AGCGAGATAAGGCGCACTTCGAGCACACCACGTCATTTCTTGTTGGTCAA
ATGGATCGCCATCGATTGGAGGATTGGATGGAGAATTCTCTGCTGTCTGT
GGAGGTTCATGATAGGTACGTATGCACTTGGTGGACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11082:5832..6221+

>mRNA_Ecto-sp8_S_contig11082.1455.1 ID=mRNA_Ecto-sp8_S_contig11082.1455.1|Name=mRNA_Ecto-sp8_S_contig11082.1455.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11082:5832..6221+ (Ectocarpus species8 EcLAC_412)
ATGGAGCGCCTGAACCCTTTCTCGATACAAATTTCATCGGCGGTATCGCT
GCCGGGAGTAAAAATCGAAGCCGAGTCACTCCAGGACCACGTGAAACCGA
CCAAATTCAAGCTTTTGGAGCTTCACTGCAAGCCGGTATACATCCGAGAT
AAGGCGCACTTCGAGCACACCACGTCATTTCTTGTTGGTCAAATGGATCG
CCATCGATTGGAGGATTGGATGGAGAATTCTCTGCTGTCTGTGGAGGTTC
ATGATAGGTACGTATGCACTTGGTGGACGTGA
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