mRNA_Ecto-sp8_S_contig11082.1454.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11082.1454.1
Unique NamemRNA_Ecto-sp8_S_contig11082.1454.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11082.1454.1 vs. uniprot
Match: A0A6H5JE11_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE11_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.210e-6
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:  445 MSSTRPVVPTARGLELQSLIPRTLSARASTSSL 543
            MSSTRPVVPTARGLELQSLIPRTLSARASTSSL
Sbjct:    1 MSSTRPVVPTARGLELQSLIPRTLSARASTSSL 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11082.1454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JE11_9PHAE1.210e-6100.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11082contigEcto-sp8_S_contig11082:1987..4194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size547
Hectar predicted targeting categoryother localisation
Exons2
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143192.3098133-CDS-Ecto-sp8_S_contig11082:1987..22291681143192.3098133-CDS-Ecto-sp8_S_contig11082:1987..2229Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11082 1988..2229 -
1681143192.320579-CDS-Ecto-sp8_S_contig11082:3890..41941681143192.320579-CDS-Ecto-sp8_S_contig11082:3890..4194Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11082 3891..4194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11082.1454.1prot_Ecto-sp8_S_contig11082.1454.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11082 1988..4194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11082.1454.1

>prot_Ecto-sp8_S_contig11082.1454.1 ID=prot_Ecto-sp8_S_contig11082.1454.1|Name=mRNA_Ecto-sp8_S_contig11082.1454.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=182bp
CRTPEAARTHVDLTRRARGSRSATTIVPHLNEGSCPPRGIAHQGEVEAAT
PLVDGGVDSDISAGRPGHGCGPGHGLTGVPAAVSTLRSAVTAETGEDHSR
LGITTSARASSETASHPYFARTGTAECSDSAPLRVTRSISSRNRRAASMS
STRPVVPTARGLELQSLIPRTLSARASTSSLS
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mRNA from alignment at Ecto-sp8_S_contig11082:1987..4194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11082.1454.1 ID=mRNA_Ecto-sp8_S_contig11082.1454.1|Name=mRNA_Ecto-sp8_S_contig11082.1454.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2208bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11082:1987..4194- (Ectocarpus species8 EcLAC_412)
TGCAGGACTCCAGAGGCCGCCCGCACCCATGTGGATCTGACCCGCCGTGC
CCGTGGCAGTAGAAGTGCAACAACGATTGTGCCGCATTTAAACGAAGGAT
CATGCCCCCCAAGAGGCATTGCTCATCAAGGAGAAGTAGAAGCAGCGACG
CCACTGGTTGATGGAGGGGTCGATTCTGATATTTCAGCTGGCCGCCCGGG
GCACGGTTGTGGCCCTGGTCATGGTTTAACGGGAGTGCCTGCTGCTGTTT
CGACACTTCGGTCCGCAGTCACAGCGGAAACAGGAGAGGATCACAGCAGA
CTCGGTGCGTCGTGTACCAGTCCCATCAAAACCACCCCGCTTGTCTTCGG
GTCAAGCTCATTGGAGACTGCCAGACTCAACATAATGGTCGAGTTGCTGG
TGCTGTGGAGTTTGCATCTTTTGAAAATGTCCACAGCAGCGACGTTCTGT
GTACCGTGAAGTAAACATGCCGACATGCTGCTGTGTACTCAGTGCAACCT
TCCGCCGTCGGTGTGTTGTGTAGCCGTCAATCAAGTCTTTCCGTCTCAAC
GATTCAGACACGACTGCAATGTAGAATTGTCCCCCAATGCAAACCGACGT
ACGCAAGAACTTTCCTGCCTTGAACGCTGTCTTTGGCTCCAATTCGACCA
ATACACGCCGATGAGAACGTGTCGTATTATTGTCCACTTCGTATTTGCGC
ACATCGCACGGATGACTGTGATCCCTGGTAGGTCTCATGTGGCCTTATTG
TATGCGATCACACGCTGACCCTACTATCCAAGTAGCGAACTGGGGAGGCG
ATGTATAGTAGAGTGCAGTTTACGCGAGCCCGTTCGAATCTTTCAAGCTT
TGGTTACAGTAGTTCAACACAGGCCTTTTGAGCTGGAGCAATAGGCACAG
TCAGACTACCCCTTTTGGAAACGCTGCAAACCATTCAAGCCAAGATGCCC
TCTATACTGCAGGCCTCGGCCAACATTGCACGTTCCACCTTGACAATCTT
GTTCGATTAGCGGCAAGAGGGTCTTGGGTCTACAGTCGAAACTCTGCTAG
CGAGCCTCACATTTTACGGGCGATTCCTCTACTGCCGTAAGCAAGGGCGT
TTTTTCAGATGCAGGAGGACATGCAGAATAGGTACGGGGTCTAGCATCAG
GGGGCAATCTGACGTGTCTAAAAATCCTGTAGAGGGCGAGAAGGATAGTG
TCATCATCGCCAACCTTCGCGGCACGTCGCGAAGATGTTGATGCCACCGA
ACGTAACAGATTCCATACTCATGCCCCAAGTGTTGGCGGTCGATTTCTTC
GTCGAAAAACCCGTAGACTTCACTGCGCCTGGTATGCAGTGATCAAGGCT
GGTTCTTGTAGAACGTGACTCGGAGGCATTGGAAGAAGAGGTAGCATTGA
AAACAATGCAGGCTGTAGAGTAGGGCCTGTCCAACGAACAAGTTGATAGC
ATATCGAGAGAAGAGGACGACGGCGGCGGCGGCGGTCTGCTATTCGTCAT
GCATTCTGTCGCCTCTTCAGAGGTCCAGGTTCACTCTCGTTTTGAGGACG
TCCGCCTCTTTTTGTACGCGAACGAAGGAATATTGGATGCAGGGAAACAC
ACCTGCCTGCATTCGAGAGCAGTGCCGTCGTTCACGCATGACACTCAAGA
AAGCGTAGAAGGAGGGGGGGAGGTGCGGCCAACACCTAGTGACATTCGAT
ACACGGTATGGGAGCACGAGTTGCTCGCCACGATATGCTGTCCTGCCGCA
TCCCGAAACCTCCTGCCAAAGCCGTGTCGTTTGAGGTATAGAACATCTTC
GTTATCCCCAGTTACTATCCATCCGTTACGGATATGTTTAGACTCGAACA
CCTATGGGTCCTTATTAACGGGTCGACTGTAGACGCTTTCCCAGCCTGCT
TTATCAATTCACTTGTCCGCTTTGTTGACCAACCCTACCTTGCCATCCGA
CTGTTTCCTCGCCAGGCATTACCACCAGCGCTCGGGCATCAAGTGAGACC
GCCTCGCACCCATACTTCGCACGAACGGGTACAGCTGAATGTAGCGACAG
CGCTCCCCTACGTGTCACTAGAAGCATTAGCAGCCGGAACCGAAGAGCTG
CATCGATGTCTTCAACCCGTCCCGTGGTGCCCACCGCACGTGGGCTAGAA
CTACAGAGCTTGATTCCTCGTACGCTGTCCGCGCGGGCGTCAACCTCGTC
GCTGTCCA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11082:1987..4194-

>mRNA_Ecto-sp8_S_contig11082.1454.1 ID=mRNA_Ecto-sp8_S_contig11082.1454.1|Name=mRNA_Ecto-sp8_S_contig11082.1454.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11082:1987..4194- (Ectocarpus species8 EcLAC_412)
TGCAGGACTCCAGAGGCCGCCCGCACCCATGTGGATCTGACCCGCCGTGC
CCGTGGCAGTAGAAGTGCAACAACGATTGTGCCGCATTTAAACGAAGGAT
CATGCCCCCCAAGAGGCATTGCTCATCAAGGAGAAGTAGAAGCAGCGACG
CCACTGGTTGATGGAGGGGTCGATTCTGATATTTCAGCTGGCCGCCCGGG
GCACGGTTGTGGCCCTGGTCATGGTTTAACGGGAGTGCCTGCTGCTGTTT
CGACACTTCGGTCCGCAGTCACAGCGGAAACAGGAGAGGATCACAGCAGA
CTCGGCATTACCACCAGCGCTCGGGCATCAAGTGAGACCGCCTCGCACCC
ATACTTCGCACGAACGGGTACAGCTGAATGTAGCGACAGCGCTCCCCTAC
GTGTCACTAGAAGCATTAGCAGCCGGAACCGAAGAGCTGCATCGATGTCT
TCAACCCGTCCCGTGGTGCCCACCGCACGTGGGCTAGAACTACAGAGCTT
GATTCCTCGTACGCTGTCCGCGCGGGCGTCAACCTCGTCGCTGTCC
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