mRNA_Ecto-sp8_S_contig11079.1451.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp8_S_contig11079.1451.1
Unique Name	mRNA_Ecto-sp8_S_contig11079.1451.1
Type	mRNA
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)

Homology

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BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Match: A0A6H5J9I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9I5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.800e-12
Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = -1

Query:   20 SAKKRETGIQSLRSGRDARKLTWQYRMSILGRRS----------GQTRRGVNNPRSGLRL*ITYRECKIDEVDILETVCLQ*RGSRRR-YLLLLPRE-NITQKYKQG*GGWRCVRIVEGGMGFKGYLYGPVETGTKL 394
            +A + E GIQSLRSGRDARKLTWQYRM  +G                +RG         +   ++   IDE + LET  LQ  G +   Y+    RE N+ +++K    G     +++ G+GFK YL+GP++ GTKL
Sbjct:  123 AAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQ--GFKENIYVACAERELNLRKEFKDK-EGLEVYGMLKEGIGFKDYLHGPMDAGTKL 256

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BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Match: A0A6H5JF73_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF73_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.080e-12
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = -3

Query:  120 DPIPTIGKRCKEANMAVPYVDIG--------------EAKWTNKKRGKQPTEWAKAVDNV-QGV*N*RS*YIGNGMPTVEGFKKKISVAFAEREHNPKI 371
            DPI T+GKR +EA+MAV +V  G              EA W NKKRG+QPTEW K V++V +G+       +G     ++GFK+KISVA AERE    +
Sbjct:  731 DPITTVGKRREEADMAVSHVRDGMCGIGEERLPRIAWEANWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLGT--EGLKGFKEKISVACAEREEQNXV 827

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BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Match: A0A6H5L0Q0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.560e-12
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = -1

Query:   20 SAKKRETGIQSLRSGRDARKLTWQYRMSILGRRS----------GQTRRGVNNPRSGLRL*ITYRECKIDEVDILETVCLQ*RGSRRRYLLL-LPRENITQKYKQG*GGWRCVRIVEGGMGFKGYLYGPVETGTKL 394
            +A + E GIQSLRSGRDARKLTWQYRM  +G                +RG         +   ++   IDE + LET  LQ  G + +  +    R++   K  +G  G     +++ G+GFK YL+GP++ GTKL
Sbjct:   93 AAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQ--GFKEKISVARAERKHNLNKESKGREGLEVYGMLKEGIGFKDYLHGPMDAGTKL 226

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BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Match: A0A6H5K7G9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.100e-12
Identity = 50/135 (37.04%), Postives = 66/135 (48.89%), Query Frame = -1

Query:   20 SAKKRETGIQSLRSGRDARKLTWQYRMSILGRRS----------GQTRRGVNNPRSGLRL*ITYRECKIDEVDILETVCLQ*RGSRRRYLLLLPRENITQKYKQG*GGWRCVRIVEGGMGFKGYLYGPVETGTKL 394
            +A + E GIQSLRSGRDARKLTWQYRM  +G                +RG         +   ++   IDE + LET  LQ              E  T+K  +   G     ++E G+GFK YL+GP++ GTKL
Sbjct:  494 AAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKDNISVACAEREEQNTRKESKDEEGLEVYGMLEEGVGFKDYLHGPMDAGTKL 628

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BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Match: A0A6H5K4L9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4L9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.600e-12
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = -1

Query:   20 SAKKRETGIQSLRSGRDARKLTWQYRMSILGRRSGQTRRGVNNPRSGLRL*ITYRECKIDEVDILETVCLQ*RGSRRRYLLLLPRENITQKYKQG*GGWRCVRIVEGGMGFKGYLYGPVETGTKL 394
            +A + E GIQSLRSGRDARKLTWQYRM  +G            PR    +   ++   IDE + LET  LQ    +         E   +K  +   G     +++ G+GFK YL+GP++ GTKL
Sbjct:  433 AAVRAELGIQSLRSGRDARKLTWQYRMCGMGEE--------RLPRIVKIVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLAVYGMLKEGIGFKDYLHGPMDAGTKL 549

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BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Match: A0A6H5JZE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZE3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.740e-12
Identity = 50/130 (38.46%), Postives = 68/130 (52.31%), Query Frame = -1

Query:   20 SAKKRETGIQSLRSGRDARKLTWQYRMSILGRRSGQTRRGVNNPRSGLRL*ITYRECKIDEVDILETVCLQ*RGSRRRYLLLLPRE-----NITQKYKQG*GGWRCVRIVEGGMGFKGYLYGPVETGTKL 394
            +A + E GI+SLRSGRDAR LTWQYRM                          ++  KIDE D L+T   +  GS RR++    RE     N+T+  +    G    R+++  +GFK YL+GPV+TGTKL
Sbjct:   16 AAVRAEPGIRSLRSGRDARTLTWQYRM--------------------------WKGFKIDEGDALDTDGPK--GSWRRHVAFTEREEQNIRNVTKDKE----GIEVYRMLKKRIGFKEYLHGPVDTGTKL 113

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BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Match: A0A6H5K2X0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2X0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.070e-12
Identity = 50/135 (37.04%), Postives = 68/135 (50.37%), Query Frame = -1

Query:   20 SAKKRETGIQSLRSGRDARKLTWQYRMSILGRRS----------GQTRRGVNNPRSGLRL*ITYRECKIDEVDILETVCLQ*RGSRRRYLLLLPRENITQKYKQG*GGWRCVRIVEGGMGFKGYLYGPVETGTKL 394
            +A + E GIQSLRSGRDARKLTWQYRM  +G                +RG         +   ++   IDE + LET  LQ R   +  +    RE   +K  +   G     +++ G+GFK YL+GPV+ G KL
Sbjct:  573 AAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQ-RFKEKISVACAEREQNLRKESKDEEGLEVYGMLKEGIGFKDYLHGPVDAGRKL 706

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BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Match: A0A6H5KET1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KET1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 8.350e-12
Identity = 52/138 (37.68%), Postives = 74/138 (53.62%), Query Frame = -1

Query:   20 SAKKRETGIQSLRSGRDARKLTWQYRMSILGRRS----------GQTRRGVNNPRSGLRL*-ITYRECKIDEVDILETVCLQ*RGSRRR-YLLLLPRENIT-QKYKQG*GGWRCVRIVEGGMGFKGYLYGPVETGTKL 394
            +A + E GIQSLRSGRDARKLTWQYRM  +G                +RG   P   +++    ++   IDE + LET  LQ  G + + Y+    RE    +K  +   G     +++ G+GFK YL+GP++ GTKL
Sbjct:   75 AAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRG-RQPTEWVKIVEAVWKGLDIDEDETLETEGLQ--GFKEKIYVACAEREEQNLRKESEDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKL 209

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BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Match: A0A6H5JWB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.060e-11
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = -1

Query:   20 SAKKRETGIQSLRSGRDARKLTWQYRMSILGRRS----------GQTRRGVNNPRSGLRL*ITYRECKIDEVDILETVCLQ*RGSRRRYLLLLPRE--NITQKYKQG*GGWRCVRIVEGGMGFKGYLYGPVETGTKL 394
            +A + E GIQSLRSGRDARKLTWQYRM  +G                +RG         +   ++   +D+ + LET  LQ  G ++  +    RE  N+ +K  +   G     +++ G+GFK YL+GP++ GTKL
Sbjct:  518 AAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGFDVDKDETLETEGLQ--GLKKISVACAEREEQNLRRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKL 652

[Close]

BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Match: A0A6H5KNB0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.240e-11
Identity = 50/134 (37.31%), Postives = 70/134 (52.24%), Query Frame = -1

Query:   20 KRETGIQSLRSGRDARKLTWQYRMSILGRRS----------GQTRRGVNNPRSGLRL*I-TYRECKIDEVDILETVCLQ*RGSRRRY-LLLLPRENITQKYKQG*GGWRCVRIVEGGMGFKGYLYGPVETGTKL 385
            + E GIQSLRSGRDARKLTWQYRM  +G                +RG   P   +++    ++   IDE + LET  LQ  G + +  +    RE    K  +   G     +++ G+GFK YL+GP++ GTKL
Sbjct:   33 RAELGIQSLRSGRDARKLTWQYRMCEMGEERLPRIVWEAKWANYKRG-RQPTEWIKVVEDVWKGLDIDEDETLETEGLQ--GFKEQISIACAEREQNIWKESKDKEGQEVYGMLKEGIGFKDYLHGPMDAGTKL 163

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig11079.1451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J9I5_9PHAE	2.800e-12	37.96	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF73_9PHAE	3.080e-12	44.44	Protein kinase domain-containing protein n=1 Tax=E...	[more]
A0A6H5L0Q0_9PHAE	3.560e-12	36.76	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K7G9_9PHAE	4.100e-12	37.04	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K4L9_9PHAE	5.600e-12	38.40	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JZE3_9PHAE	6.740e-12	38.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2X0_9PHAE	8.070e-12	37.04	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KET1_9PHAE	8.350e-12	37.68	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JWB1_9PHAE	1.060e-11	35.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KNB0_9PHAE	1.240e-11	37.31	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig11079	contig	Ecto-sp8_S_contig11079:5973..6480 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	508
Hectar predicted targeting category	other localisation
Exons	1
Cds size	303

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681143192.1023214-UTR-Ecto-sp8_S_contig11079:5972..6103	1681143192.1023214-UTR-Ecto-sp8_S_contig11079:5972..6103	Ectocarpus species8 EcLAC_412	UTR	Ecto-sp8_S_contig11079 5973..6103 +
1681143192.1248925-UTR-Ecto-sp8_S_contig11079:6406..6480	1681143192.1248925-UTR-Ecto-sp8_S_contig11079:6406..6480	Ectocarpus species8 EcLAC_412	UTR	Ecto-sp8_S_contig11079 6407..6480 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681143192.1118844-CDS-Ecto-sp8_S_contig11079:6103..6406	1681143192.1118844-CDS-Ecto-sp8_S_contig11079:6103..6406	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig11079 6104..6406 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig11079.1451.1	prot_Ecto-sp8_S_contig11079.1451.1	Ectocarpus species8 EcLAC_412	polypeptide	Ecto-sp8_S_contig11079 6104..6406 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp8_S_contig11079:5973..6480+
coding sequence from alignment at Ecto-sp8_S_contig11079:5973..6480+

protein sequence of mRNA_Ecto-sp8_S_contig11079.1451.1

>prot_Ecto-sp8_S_contig11079.1451.1 ID=prot_Ecto-sp8_S_contig11079.1451.1|Name=mRNA_Ecto-sp8_S_contig11079.1451.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=101bp
MFSLGKSNRYLLLEPLYCRHTVSNISTSSILHSLYVIYSLSPLRGLFTPL
LVCPLRLPNIDIRYCHVSFLASLPDRRDWIPVSLFFADVTNTPRGQLQGI
*

mRNA from alignment at Ecto-sp8_S_contig11079:5973..6480+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp8_S_contig11079.1451.1 ID=mRNA_Ecto-sp8_S_contig11079.1451.1|Name=mRNA_Ecto-sp8_S_contig11079.1451.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=508bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11079:5973..6480+ (Ectocarpus species8 EcLAC_412)
CCCAGTCGTAAATTTGACCCAGCTTTGTCCCTGTCTCCACTGGTCCATAC
AGGTACCCCTTGAACCCCATTCCTCCTTCAACAATCCGTACACATCTCCA
CCCTCCTTATCCTTGTTTATATTTTTGGGTTATGTTCTCTCTCGGCAAAA
GCAACAGATATCTTCTTCTTGAACCCCTCTACTGTAGGCATACCGTTTCC
AATATATCAACTTCGTCAATTTTACACTCCCTGTACGTTATCTACAGCCT
TAGCCCACTCCGTGGGTTGTTTACCCCTCTTCTTGTTTGTCCACTTCGCC
TCCCCAATATCGACATACGGTACTGCCATGTTAGCTTCCTTGCATCTCTT
CCCGATCGTAGGGATTGGATCCCTGTTTCTCTTTTTTTTGCTGATGTGAC
AAACACACCTCGGGGTCAACTCCAAGGTATCTAGAGGGGCGATATTTTTC
AAAAATAAAAAACATCTTGGGGCCGAAAAGTCCCCTTGGGAGGGTTGTCT
TTTTTCTG

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11079:5973..6480+

>mRNA_Ecto-sp8_S_contig11079.1451.1 ID=mRNA_Ecto-sp8_S_contig11079.1451.1|Name=mRNA_Ecto-sp8_S_contig11079.1451.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11079:5973..6480+ (Ectocarpus species8 EcLAC_412)
ATGTTCTCTCTCGGCAAAAGCAACAGATATCTTCTTCTTGAACCCCTCTA
CTGTAGGCATACCGTTTCCAATATATCAACTTCGTCAATTTTACACTCCC
TGTACGTTATCTACAGCCTTAGCCCACTCCGTGGGTTGTTTACCCCTCTT
CTTGTTTGTCCACTTCGCCTCCCCAATATCGACATACGGTACTGCCATGT
TAGCTTCCTTGCATCTCTTCCCGATCGTAGGGATTGGATCCCTGTTTCTC
TTTTTTTTGCTGATGTGACAAACACACCTCGGGGTCAACTCCAAGGTATC
TAG