mRNA_Ecto-sp8_S_contig11077.1448.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11077.1448.1
Unique NamemRNA_Ecto-sp8_S_contig11077.1448.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11077.1448.1 vs. uniprot
Match: D8LR83_ECTSI (PEROXIDASE_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR83_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 9.810e-17
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 ASLGLGLALAVSPKAARATVNFETERYGDKELKIATVNKLRQQIRNSV 144
            AS GLGLALAVSP+AA+A+VNFETERYGDKELKIATVNKLRQQIRNS+
Sbjct:   73 ASFGLGLALAVSPEAAQASVNFETERYGDKELKIATVNKLRQQIRNSL 120
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BLAST of mRNA_Ecto-sp8_S_contig11077.1448.1 vs. uniprot
Match: A0A7S1FWQ2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWQ2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.080e-6
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   10 GLGLALAVS----PKAARATVNFETERYGDKELKIATVNKLRQQIRNSV 144
            GLG  LA S    P+ A ATV F+ +RYGDKELKIATVNKLRQ +R+++
Sbjct:   65 GLGSTLAASTLIQPQEAYATVFFDPDRYGDKELKIATVNKLRQNVRSTI 113
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BLAST of mRNA_Ecto-sp8_S_contig11077.1448.1 vs. uniprot
Match: K8ZA26_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZA26_NANGC)

HSP 1 Score: 50.1 bits (118), Expect = 1.180e-6
Identity = 26/43 (60.47%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   19 LALAVSPKAARATVNFETERYGDKELKIATVNKLRQQIRNSVS 147
            L+L+ +P A RA+V F+ +RYGDKELKIATVNKL+Q++RN+++
Sbjct:   35 LSLSSTPPA-RASVAFDPDRYGDKELKIATVNKLKQKLRNAIA 76
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BLAST of mRNA_Ecto-sp8_S_contig11077.1448.1 vs. uniprot
Match: W7U1L4_9STRA (L-ascorbate peroxidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1L4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.940e-6
Identity = 26/43 (60.47%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   19 LALAVSPKAARATVNFETERYGDKELKIATVNKLRQQIRNSVS 147
            L+L+ +P A RA+V F+ +RYGDKELKIATVNKL+Q++RN+++
Sbjct:   80 LSLSSTPPA-RASVAFDPDRYGDKELKIATVNKLKQKLRNAIA 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11077.1448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LR83_ECTSI9.810e-1789.58PEROXIDASE_4 domain-containing protein n=2 Tax=Ect... [more]
A0A7S1FWQ2_9STRA1.080e-661.22Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
K8ZA26_NANGC1.180e-660.47Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
W7U1L4_9STRA6.940e-660.47L-ascorbate peroxidase n=1 Tax=Nannochloropsis gad... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11077contigEcto-sp8_S_contig11077:35..181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score82.4
Seed ortholog evalue6.4e-14
Seed eggNOG ortholog2880.D8LR83
Model size147
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.Peroxidase
EggNOG OGs2DJYV@1,2S61P@2759
Cds size147
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143192.0392673-CDS-Ecto-sp8_S_contig11077:34..1811681143192.0392673-CDS-Ecto-sp8_S_contig11077:34..181Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11077 35..181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11077.1448.1prot_Ecto-sp8_S_contig11077.1448.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11077 35..181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11077.1448.1

>prot_Ecto-sp8_S_contig11077.1448.1 ID=prot_Ecto-sp8_S_contig11077.1448.1|Name=mRNA_Ecto-sp8_S_contig11077.1448.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=49bp
ASLGLGLALAVSPKAARATVNFETERYGDKELKIATVNKLRQQIRNSVS
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mRNA from alignment at Ecto-sp8_S_contig11077:35..181-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11077.1448.1 ID=mRNA_Ecto-sp8_S_contig11077.1448.1|Name=mRNA_Ecto-sp8_S_contig11077.1448.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11077:35..181- (Ectocarpus species8 EcLAC_412)
GCATCCCTCGGTCTCGGTCTCGCCTTGGCGGTTTCACCCAAGGCCGCCCG
AGCAACCGTTAACTTCGAGACGGAAAGGTACGGAGACAAAGAGCTCAAGA
TCGCCACCGTCAACAAGCTCAGGCAACAGATACGCAACTCGGTGAGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11077:35..181-

>mRNA_Ecto-sp8_S_contig11077.1448.1 ID=mRNA_Ecto-sp8_S_contig11077.1448.1|Name=mRNA_Ecto-sp8_S_contig11077.1448.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11077:35..181- (Ectocarpus species8 EcLAC_412)
GCATCCCTCGGTCTCGGTCTCGCCTTGGCGGTTTCACCCAAGGCCGCCCG
AGCAACCGTTAACTTCGAGACGGAAAGGTACGGAGACAAAGAGCTCAAGA
TCGCCACCGTCAACAAGCTCAGGCAACAGATACGCAACTCGGTGAGT
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