mRNA_Ecto-sp8_S_contig11071.1445.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11071.1445.1
Unique NamemRNA_Ecto-sp8_S_contig11071.1445.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Match: D7G6J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J2_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 3.150e-23
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1
Query:    1 VQVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQVVDAPAVLR 132
            +QVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQVVDAPAVLR
Sbjct:    1 MQVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQVVDAPAVLR 44          
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Match: A0A6H5L4C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C2_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.370e-13
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:    1 VQVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQV 108
            +QV +DGRVYVAVK PSISELWPEIYNNRSIRVVQV
Sbjct:   70 MQVRKDGRVYVAVKCPSISELWPEIYNNRSIRVVQV 105          
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Match: A0A6H5L3B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.930e-10
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 VQVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQVVDAPAVL 129
            +QVG+D RVYVAVK+P+++ELWPEIY N ++ VVQV   P++L
Sbjct:   83 MQVGEDERVYVAVKFPTMNELWPEIYQNVAVEVVQVRLFPSIL 125          
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Match: D7G6J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J1_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.170e-9
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    1 VQVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQV 108
            +QVG+D RVYVAVKYP+++ELWPEIY N ++ VVQV
Sbjct:   74 MQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQV 109          
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Match: D8LCL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 5.330e-8
Identity = 23/36 (63.89%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    1 VQVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQV 108
            +Q G +GRVY AV+YPS++ELWPE+YN+ +IRVV+V
Sbjct:  277 LQAGSNGRVYGAVQYPSMAELWPEVYNSTAIRVVKV 312          
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Match: A0A6H5JZ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.020e-7
Identity = 22/35 (62.86%), Postives = 32/35 (91.43%), Query Frame = 1
Query:    4 QVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQV 108
            + G +GRVY AV+YPS++ELWPE+YN+++IRVV+V
Sbjct:  362 RAGSNGRVYGAVQYPSMAELWPEVYNSKAIRVVKV 396          
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Match: A0A6H5JPU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   10 GQDGRVYVAVKYPSISELWPEIYNNRSIRVVQVVDA 117
            G +GRVY A++YPS+SELWPEI    ++RVVQV DA
Sbjct:  584 GGNGRVYGALRYPSMSELWPEICRTSAVRVVQVEDA 619          
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Match: D8LCJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ7_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.330e-6
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    1 VQVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQV 108
            +Q G +GRVY A++YPS+SELWPEI +  ++RVVQV
Sbjct:  544 LQAGGNGRVYGALRYPSMSELWPEICSTSAVRVVQV 579          
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Match: D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6
Identity = 19/36 (52.78%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    1 VQVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQV 108
            +Q+G +GR Y  V YPS+ E+WPE+Y+  +IRVV+V
Sbjct:  449 IQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEV 484          
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Match: D7G7N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI)

HSP 1 Score: 47.0 bits (110), Expect = 6.280e-5
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 1
Query:    1 VQVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQVVDAPAVL 129
            +QV  DGR Y  V YPS+ E+WPE+Y    +R V+V  A  VL
Sbjct:  121 IQVAADGRAYSRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVL 163          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11071.1445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G6J2_ECTSI3.150e-2397.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4C2_9PHAE2.370e-1388.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3B8_9PHAE2.930e-1060.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J1_ECTSI1.170e-969.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCL1_ECTSI5.330e-863.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ42_9PHAE1.020e-762.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPU4_9PHAE1.250e-663.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCJ7_ECTSI2.330e-661.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ48_ECTSI5.980e-652.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G7N4_ECTSI6.280e-548.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11071contigEcto-sp8_S_contig11071:5880..6198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_006390.1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143191.9116518-CDS-Ecto-sp8_S_contig11071:5879..59841681143191.9116518-CDS-Ecto-sp8_S_contig11071:5879..5984Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11071 5880..5984 +
1681143191.9212785-CDS-Ecto-sp8_S_contig11071:6168..61981681143191.9212785-CDS-Ecto-sp8_S_contig11071:6168..6198Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11071 6169..6198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11071.1445.1prot_Ecto-sp8_S_contig11071.1445.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11071 5880..6198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11071.1445.1

>prot_Ecto-sp8_S_contig11071.1445.1 ID=prot_Ecto-sp8_S_contig11071.1445.1|Name=mRNA_Ecto-sp8_S_contig11071.1445.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=45bp
VQVGQDGRVYVAVKYPSISELWPEIYNNRSIRVVQVVDAPAVLR*
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mRNA from alignment at Ecto-sp8_S_contig11071:5880..6198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11071.1445.1 ID=mRNA_Ecto-sp8_S_contig11071.1445.1|Name=mRNA_Ecto-sp8_S_contig11071.1445.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=319bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11071:5880..6198+ (Ectocarpus species8 EcLAC_412)
GTTCAGGTGGGGCAAGACGGGCGCGTCTACGTCGCAGTCAAGTATCCCAG TATCAGCGAGCTCTGGCCGGAGATCTACAACAACAGATCCATCCGAGTCG TGCAGGTATGGCGTGATTTCGTCATATACATCAAGTATCAGCGTGACGGG ATGAATATCAACAAGAAACTACGCTGTGCTTCACCACCGCTTGCTTTGCC AGCCGAAAAGCCTCAACATACGTACGTAAACTTGTGCCGATCGACGATCG ATATTGTCAGTATAAGGTTGTCGATATTGTCAATATAAGGTTGTCGATGC GCCTGCCGTGTTGCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11071:5880..6198+

>mRNA_Ecto-sp8_S_contig11071.1445.1 ID=mRNA_Ecto-sp8_S_contig11071.1445.1|Name=mRNA_Ecto-sp8_S_contig11071.1445.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11071:5880..6198+ (Ectocarpus species8 EcLAC_412)
GTTCAGGTGGGGCAAGACGGGCGCGTCTACGTCGCAGTCAAGTATCCCAG
TATCAGCGAGCTCTGGCCGGAGATCTACAACAACAGATCCATCCGAGTCG
TGCAGGTTGTCGATGCGCCTGCCGTGTTGCGTTGA
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