mRNA_Ecto-sp8_S_contig11068.1442.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11068.1442.1
Unique NamemRNA_Ecto-sp8_S_contig11068.1442.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11068.1442.1 vs. uniprot
Match: A0A6H5JG23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG23_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.380e-47
Identity = 114/133 (85.71%), Postives = 117/133 (87.97%), Query Frame = 1 
Query:  112 MRLHLPLLFLLEF----TGSASGLKISPPRSTTKVTTSRRTHTSCTPLEATAGRGGSKVPRKERTSAPDGSKDTRKAWRWGGFVRPKVYPASKNKSXXXXXXXXXXXXXXXXXGDIGTAGSDTGTAMAIVSQT 498
            MRLH+ LLFLLEF    TGSASGLKISPPR T  VTTS RTHTSCTPL+ATAGRGGSKVPRKERTSAPDGSKDTR+AWRWGGFVRPKVYPASK    XXXXXXXXXXXXXX   DIGTAGSDTGTAMAIVSQT
Sbjct:    1 MRLHVLLLFLLEFMLEFTGSASGLKISPPRFTA-VTTSGRTHTSCTPLKATAGRGGSKVPRKERTSAPDGSKDTREAWRWGGFVRPKVYPASKQNKNXXXXXXXXXXXXXX---DIGTAGSDTGTAMAIVSQT 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11068.1442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JG23_9PHAE1.380e-4785.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11068contigEcto-sp8_S_contig11068:6069..6566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size500
Hectar predicted targeting categorychloroplast
Exons1
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143191.7379456-UTR-Ecto-sp8_S_contig11068:6068..61791681143191.7379456-UTR-Ecto-sp8_S_contig11068:6068..6179Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11068 6069..6179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143191.7537987-CDS-Ecto-sp8_S_contig11068:6179..65661681143191.7537987-CDS-Ecto-sp8_S_contig11068:6179..6566Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11068 6180..6566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11068.1442.1prot_Ecto-sp8_S_contig11068.1442.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11068 6180..6566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11068.1442.1

>prot_Ecto-sp8_S_contig11068.1442.1 ID=prot_Ecto-sp8_S_contig11068.1442.1|Name=mRNA_Ecto-sp8_S_contig11068.1442.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=129bp
MRLHLPLLFLLEFTGSASGLKISPPRSTTKVTTSRRTHTSCTPLEATAGR
GGSKVPRKERTSAPDGSKDTRKAWRWGGFVRPKVYPASKNKSSSSDAGNN
NDDNNNNNNGDIGTAGSDTGTAMAIVSQT
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mRNA from alignment at Ecto-sp8_S_contig11068:6069..6566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11068.1442.1 ID=mRNA_Ecto-sp8_S_contig11068.1442.1|Name=mRNA_Ecto-sp8_S_contig11068.1442.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=498bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11068:6069..6566+ (Ectocarpus species8 EcLAC_412)
CTGCCCCACAGCAGGCACGCGATGCGCCGGATGTGCAATGCCTGGAAACC
TCTTTGTTGATGGGTATCGAAGGATTGGATCTCTCGCCAACCGTGCCGTA
TTCTCGCCATCATGCGGCTCCATCTTCCGCTGCTCTTCCTGCTGGAGTTC
ACAGGTAGTGCAAGCGGTTTGAAAATCTCACCTCCCCGGTCCACCACCAA
AGTTACTACAAGCAGACGAACACACACATCATGCACGCCGCTGGAGGCAA
CAGCGGGCCGTGGTGGTAGCAAGGTTCCGCGAAAAGAGCGTACCAGCGCT
CCTGACGGGAGCAAGGACACCAGGAAGGCTTGGAGGTGGGGCGGATTCGT
CCGACCCAAGGTGTACCCTGCTTCCAAGAACAAGTCATCAAGCAGCGACG
CCGGGAACAACAACGACGACAACAACAACAACAACAACGGCGATATTGGC
ACCGCCGGCAGCGACACCGGCACCGCCATGGCCATCGTGTCGCAGACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11068:6069..6566+

>mRNA_Ecto-sp8_S_contig11068.1442.1 ID=mRNA_Ecto-sp8_S_contig11068.1442.1|Name=mRNA_Ecto-sp8_S_contig11068.1442.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11068:6069..6566+ (Ectocarpus species8 EcLAC_412)
ATGCGGCTCCATCTTCCGCTGCTCTTCCTGCTGGAGTTCACAGGTAGTGC
AAGCGGTTTGAAAATCTCACCTCCCCGGTCCACCACCAAAGTTACTACAA
GCAGACGAACACACACATCATGCACGCCGCTGGAGGCAACAGCGGGCCGT
GGTGGTAGCAAGGTTCCGCGAAAAGAGCGTACCAGCGCTCCTGACGGGAG
CAAGGACACCAGGAAGGCTTGGAGGTGGGGCGGATTCGTCCGACCCAAGG
TGTACCCTGCTTCCAAGAACAAGTCATCAAGCAGCGACGCCGGGAACAAC
AACGACGACAACAACAACAACAACAACGGCGATATTGGCACCGCCGGCAG
CGACACCGGCACCGCCATGGCCATCGTGTCGCAGACC
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