mRNA_Ecto-sp8_S_contig1106.1436.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1106.1436.1
Unique NamemRNA_Ecto-sp8_S_contig1106.1436.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1106.1436.1 vs. uniprot
Match: D7FLM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM3_ECTSI)

HSP 1 Score: 554 bits (1428), Expect = 1.290e-198
Identity = 291/303 (96.04%), Postives = 296/303 (97.69%), Query Frame = 1 
Query:    1 MGCGARKCMTPGEDHPQLPHAKRRDGAGRGPGAYATGDSAVMGHHGGTFAAADNRRAATAALEMVVGRLKTLEWRIDFIRRGEREPEKLRPGQSLVVRTQSGQELKRMEEKASRLRSEIERLGKLAASEASTRDPLPGASIGRGGRAGGNERRPATTAADGSTGRDKRGPAGQGKGRFYDPIPSTATFLESPGPGAYSLTSGEGAFGRASISRSPAFDLMQRRVVGDQAAAGRSLASLHLHSAENGGGSGSSNSRGGRDGLGAPFHAYLSETGPGHYTPDMSAPPLPNEARRWRRGGGMRDTT 909
            MGCGARKCMTPG+DHPQLPHAKRRDGAG GPGAYATGDSAVMGHHGGTFAAADNRRAATAALEMVVGRLKTLEWRI+FIRRGEREPEKLRPGQSLVVRTQSGQEL RMEEKASRLRSEI+RLGKLAASEASTRDPLPGASIGRGGRAGGNERRPATTAAD STGRDKRGPAGQGK RFYDPI STATFLESPGPGAYSLTSGEGAFGRASISRSPAFDLMQRRV+GDQAAAGRSLASLHLHSAENGGGSGS NSRGGRDGLGAPFHAYLSETG GHYTPDMSAPPLPNEARRWRRGGG+RDTT
Sbjct:    1 MGCGARKCMTPGKDHPQLPHAKRRDGAGPGPGAYATGDSAVMGHHGGTFAAADNRRAATAALEMVVGRLKTLEWRIEFIRRGEREPEKLRPGQSLVVRTQSGQELMRMEEKASRLRSEIKRLGKLAASEASTRDPLPGASIGRGGRAGGNERRPATTAADCSTGRDKRGPAGQGKDRFYDPISSTATFLESPGPGAYSLTSGEGAFGRASISRSPAFDLMQRRVIGDQAAAGRSLASLHLHSAENGGGSGSGNSRGGRDGLGAPFHAYLSETGTGHYTPDMSAPPLPNEARRWRRGGGVRDTT 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1106.1436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLM3_ECTSI1.290e-19896.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1106contigEcto-sp8_S_contig1106:8776..12338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size912
Hectar predicted targeting categoryother localisation
Exons5
Cds size912
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143191.2500226-CDS-Ecto-sp8_S_contig1106:8775..90491681143191.2500226-CDS-Ecto-sp8_S_contig1106:8775..9049Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1106 8776..9049 -
1681143191.265573-CDS-Ecto-sp8_S_contig1106:9764..98831681143191.265573-CDS-Ecto-sp8_S_contig1106:9764..9883Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1106 9765..9883 -
1681143191.2752402-CDS-Ecto-sp8_S_contig1106:10332..105881681143191.2752402-CDS-Ecto-sp8_S_contig1106:10332..10588Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1106 10333..10588 -
1681143191.2860498-CDS-Ecto-sp8_S_contig1106:11629..117831681143191.2860498-CDS-Ecto-sp8_S_contig1106:11629..11783Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1106 11630..11783 -
1681143191.2943478-CDS-Ecto-sp8_S_contig1106:12229..123381681143191.2943478-CDS-Ecto-sp8_S_contig1106:12229..12338Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1106 12230..12338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1106.1436.1prot_Ecto-sp8_S_contig1106.1436.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1106 8776..12338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1106.1436.1

>prot_Ecto-sp8_S_contig1106.1436.1 ID=prot_Ecto-sp8_S_contig1106.1436.1|Name=mRNA_Ecto-sp8_S_contig1106.1436.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=304bp
MGCGARKCMTPGEDHPQLPHAKRRDGAGRGPGAYATGDSAVMGHHGGTFA
AADNRRAATAALEMVVGRLKTLEWRIDFIRRGEREPEKLRPGQSLVVRTQ
SGQELKRMEEKASRLRSEIERLGKLAASEASTRDPLPGASIGRGGRAGGN
ERRPATTAADGSTGRDKRGPAGQGKGRFYDPIPSTATFLESPGPGAYSLT
SGEGAFGRASISRSPAFDLMQRRVVGDQAAAGRSLASLHLHSAENGGGSG
SSNSRGGRDGLGAPFHAYLSETGPGHYTPDMSAPPLPNEARRWRRGGGMR
DTT*
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mRNA from alignment at Ecto-sp8_S_contig1106:8776..12338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1106.1436.1 ID=mRNA_Ecto-sp8_S_contig1106.1436.1|Name=mRNA_Ecto-sp8_S_contig1106.1436.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3563bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1106:8776..12338- (Ectocarpus species8 EcLAC_412)
ATGGGGTGCGGAGCACGCAAATGCATGACCCCGGGGGAGGACCACCCCCA
GTTGCCCCACGCCAAGCGGCGTGACGGTGCAGGTCGAGGCCCTGGCGCAT
ATGCTACTGGTGAGAGACAGTGATACAGCTACCACACGACGGATCCGCAG
CATAATCAGCACCTACAGTTCTAGGTTCGTTATTCAAGGAGCCTGGGGTT
TGAGACCGCCTAGGAAGCCAGGTCTCTTGACACTGTCAAGCAGTGAAAAT
GTGGTAGGTCAGAGCTATGATGAACGAGATGAAATCCTAGCAACACCGGC
ATCAAACTCACGACATAAATATAGTGTTGGGGAGTGGCAGGACGGTCGTT
TAGGCCAAGTAACGGCCCAGAGAATGAAGACGACACAATCACAAAACAGT
GTAGACAACGCGGACGGCAAAACAATTGCCGTTGAACCAAGAATCGGCTT
GTCTTGCGCTGCAGTGTAAATTACCCGAACGCACTCTCCACTCCTTGCCG
TCTATAGCGTAACCGGGCATATCAACGTGCTTCGGTTCCACCCTTTGTTT
TCCAGGCGACTCAGCAGTGATGGGACATCACGGAGGAACATTCGCCGCAG
CGGATAACAGGAGGGCGGCCACCGCGGCGCTGGAGATGGTAGTCGGGCGA
CTTAAGACGCTGGAATGGAGGATCGATTTCATTCGGCGGGGGGAGAGAGA
GCCCGAAAAGTAAGGACTTTGCGTGAACGGGCCATACTTTCGCATCGAAT
TTCCCAAATCCCAAGTTCTAAAGTACGAGAACCTCTGTTTCGGGCTCCGA
AAGAAGAGGGATCGCTGCCAACTTACCAAAAACATGAAGCTGACGACAGG
GGGCAAAAATGCTTGGAGCGGTGTCTTCCGATTTGGTTGGAGGAAATTTA
CCAGGTCAGGACTTCACACGTTTGGTGACCGGCGTTCAACGGTCCAAACC
CGCCTGTAACGGATGGGACATGCTGCGGTGGTTGGCAGCGTCAGCAGAAC
CGCGACAATTTTCGATTAATGTTTTTCGTGAGCGCGAGACTGACGATTAA
TGGAGCCTATTGAAGCGTCAGGTTTCAAGACACGCTTAAGATTCGCGCTA
GAGACTATCCGGCCGGCATTGACTACTAACGATGAGATGGACTTGACTGG
ATGAATTCTCACAACTAAAACCACGCTTGGTGGTCCGCTTGGATCTCTGG
CGCGCCTTCCTCTGCCCTCCGGCTTGCCCCTTCTTGGAAAAGTCACACAA
ACGCTACCGCGCGTTCGCCACACCCCGATGTTCCGCACGATAAGTCTCGA
CCACTCCAGGCCAAAACTCGGTGCAAGTTGCTTTTAAACAAGGCCAAACG
TTAAGCACCCGGTTCTCTTCGTTCCTCAACTATCTGCCTTACCCTCCATG
CAAATTCATCATAAAACAGCCCAGATTGTAGAATTTGTTTCGGGAGAACT
CGGACCAAACCTATCTAGCGCATCCATGGCACGCAAAGGCACAACACTCT
CGTTCTTCACCCATTTTTACTCAAAATCGTGCTATGTCGGGTAGCTAGTC
CTGGTCGGTTGGGTCAGGACATGAGGGTACTGCAGAAAAATCGGAAGTAT
TGTGAACCCACTGAACACAGCAACAACAACAATAACAACACCAACCACAT
GCCAAAATACGCGCTCCAGACTCTGGCAGCGCTGGATTGGCAACAAAAAT
AAACGTTCTCATTCACTGTTGTTTGGGTCCTGACCCTCCCACCCCCACAG
ACTGCGACCAGGTCAATCCCTCGTCGTAAGGACCCAATCCGGGCAAGAGC
TAAAGCGCATGGAGGAGAAAGCGTCCCGGTTGAGATCAGAAATCGAACGC
CTCGGGAAGCTCGCCGCTTCAGAAGCTTCCACGCGAGACCCACTCCCCGG
GGCGTCGATCGGTCGGGGGGGTAGAGCAGGGGGCAATGAGCGGCGGCCAG
CCACGACGGCCGCGGATGGCAGTACCGGAAGGGACAAGCGTGGACCTGCG
GGTCAGGTTCGTGCTCGGTGTGGGTGCTGTTGTTCTTGCCGTTCCAGCGC
GAGGGTTAGTACCGTATGTCAGGCCATAGCTGCACGATCCGTTTCCAATC
GGGCGAGACGATCGAGCGAGGAAGTCACTACTCGCCGCCGGACCATGGTG
ACCTCGCAAAGGAAATAACTAAAACTTCACACAATAATAGAAAGGTGTGG
AAATGACAAGCCAATCTAACCGTTGTAATACATGGCGTGGACAACGACAA
CCCAGCAACCCTCGCGGAGTGATAATTTGTTGTATTGATCTCTTTTCCCA
TGCCTCCTTGCAACTATCAGAGCAAGCTCAACGGCGCGTTTGCGTCCAAG
CCAATACTCCAAATGATCCGCCTTCTGGACGTCGGAACCAAGCCTCTTAG
AACCCCCTCACCCCTCTGAACCTGTTGTTGACATTTCTCCCGTGGCTGAT
GGCAGGGGAAAGGCCGATTCTACGACCCCATACCAAGTACGGCAACATTC
TTGGAATCCCCAGGGCCGGGTGCGTACAGTCTGACAAGCGGTGAGGGGGC
CTTCGGGAGGGCTTCGATCAGCAGGTAAATTGAGCGCGTGACCCTTCACA
AGGGGTTTCGATCGAGAGGCCCCCCCTCGCAGGTCGTGCCACGTCGAAGC
ACCACTCTTTCGTTTCTTGAAAGAGATAGATCAACGTCGTGCCAAGAACA
ACCACATTGAGGTCAACAAGCAATAGTTCGGGACAAAGTTGCTTACGTTG
ACGAACCTCGGCCGGCGAACCACAAACTAAGCCGTTAAGACGGTCGCTGG
TTGGTGAAACACCACAGTCCTGACCCGCTGGCGGAACCGTCCGCAATAGC
TGAGCCTCGACTTGTACACGACGAGGCGAGCATTGTGATGAGGGCAGTAC
AACGCGGCCAACCTCTACCGTTCACAGACGCTTGTAAGGATATACCACTA
CGGGTACCTCACCTTCCTCTTCTGTTGCCGAGGTGCTACGGCGTGCTAGT
CAATCACGAACGCACGCCCGCTCCTCTCCGTCCATTCCGTCCCTTCATAG
TTTTGCAACAAGCTACTGGGAGAGTGATGAACGTGTCAGGTGATCACGAT
AGGAACCTTGACTTCCAGGCGTGGTAAACACTTCAATCGTGTTGTAGGTT
CGAAACTTCAGAAACCAACGTCCAACCGGAACTCTTAGCCGGCGGCTCCA
CCACAGACTCAACGATGACCATCGGCCGTCTCCCTACCCCGCACCTCTCG
CTTGTGCTTTTTCCCTCTCTTCTCGCTTACCAACCAAAGATCCCCGGCGT
TTGACCTCATGCAACGGAGGGTCGTCGGAGATCAGGCCGCCGCGGGCCGT
AGCCTTGCATCTCTTCACCTGCACTCTGCGGAGAACGGTGGCGGGAGCGG
CAGTAGCAATAGTCGTGGTGGTCGCGACGGGCTGGGTGCGCCGTTCCACG
CCTACCTCTCGGAAACTGGGCCCGGTCACTACACCCCGGACATGTCCGCG
CCCCCGCTGCCCAACGAAGCTAGGCGATGGCGGCGAGGTGGTGGCATGAG
GGATACAACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1106:8776..12338-

>mRNA_Ecto-sp8_S_contig1106.1436.1 ID=mRNA_Ecto-sp8_S_contig1106.1436.1|Name=mRNA_Ecto-sp8_S_contig1106.1436.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1106:8776..12338- (Ectocarpus species8 EcLAC_412)
ATGGGGTGCGGAGCACGCAAATGCATGACCCCGGGGGAGGACCACCCCCA
GTTGCCCCACGCCAAGCGGCGTGACGGTGCAGGTCGAGGCCCTGGCGCAT
ATGCTACTGGCGACTCAGCAGTGATGGGACATCACGGAGGAACATTCGCC
GCAGCGGATAACAGGAGGGCGGCCACCGCGGCGCTGGAGATGGTAGTCGG
GCGACTTAAGACGCTGGAATGGAGGATCGATTTCATTCGGCGGGGGGAGA
GAGAGCCCGAAAAACTGCGACCAGGTCAATCCCTCGTCGTAAGGACCCAA
TCCGGGCAAGAGCTAAAGCGCATGGAGGAGAAAGCGTCCCGGTTGAGATC
AGAAATCGAACGCCTCGGGAAGCTCGCCGCTTCAGAAGCTTCCACGCGAG
ACCCACTCCCCGGGGCGTCGATCGGTCGGGGGGGTAGAGCAGGGGGCAAT
GAGCGGCGGCCAGCCACGACGGCCGCGGATGGCAGTACCGGAAGGGACAA
GCGTGGACCTGCGGGTCAGGGGAAAGGCCGATTCTACGACCCCATACCAA
GTACGGCAACATTCTTGGAATCCCCAGGGCCGGGTGCGTACAGTCTGACA
AGCGGTGAGGGGGCCTTCGGGAGGGCTTCGATCAGCAGATCCCCGGCGTT
TGACCTCATGCAACGGAGGGTCGTCGGAGATCAGGCCGCCGCGGGCCGTA
GCCTTGCATCTCTTCACCTGCACTCTGCGGAGAACGGTGGCGGGAGCGGC
AGTAGCAATAGTCGTGGTGGTCGCGACGGGCTGGGTGCGCCGTTCCACGC
CTACCTCTCGGAAACTGGGCCCGGTCACTACACCCCGGACATGTCCGCGC
CCCCGCTGCCCAACGAAGCTAGGCGATGGCGGCGAGGTGGTGGCATGAGG
GATACAACGTGA
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