mRNA_Ecto-sp8_S_contig11058.1433.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11058.1433.1
Unique NamemRNA_Ecto-sp8_S_contig11058.1433.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Match: D8LN81_ECTSI (TBC1 domain family member 23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN81_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 1.270e-70
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:   58 MFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQVHDPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 414
            MFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQ  DPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR
Sbjct:    1 MFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQ--DPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 117
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BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Match: A0A2R5GE11_9STRA (TBC1 domain family member 23 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GE11_9STRA)

HSP 1 Score: 131 bits (330), Expect = 8.070e-33
Identity = 66/137 (48.18%), Postives = 91/137 (66.42%), Query Frame = 1 
Query:    4 EDRRVLAADIKRTRQAYAMFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQVHDPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 414
            E++RV+  D +RTR    +F+ EE+  LVS++L  YC   GI+YKQG NE++APF+ML+  DPPLP   +  MF +F+ RF+   FV ++  AL  S+R+FR+LL Y DP L   LD     PELYAT W +TLF+R
Sbjct:  923 ENQRVIRVDAQRTRADVEIFRTEEMQLLVSRLLTFYCKRKGIKYKQGLNEVLAPFIMLR-RDPPLPDGTVFNMFYAFIERFLPHSFVHEDFHALQCSFRLFRLLLLYHDPELCNFLDTHSLSPELYATPWFLTLFAR 1058
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BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Match: A0A7S3YFA6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA6_HETAK)

HSP 1 Score: 123 bits (308), Expect = 9.400e-33
Identity = 58/137 (42.34%), Postives = 91/137 (66.42%), Query Frame = 1 
Query:    4 EDRRVLAADIKRTRQAYAMFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQVHDPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 414
            +D R +AAD+KRTR+   +F++E+    + ++L ++C+     YKQG NE++APF  L   +PPLP  ++  +FE+F+ R++  + +DD+   L  ++ +F +LL Y DP LAR L  A F PELYAT W++TLFSR
Sbjct:    6 DDLRTIAADVKRTRRDLPLFQKEKTQASLEKLLIQWCIQRQTSYKQGLNEVLAPFYTLA--EPPLPEELIYKLFEAFVKRYLEVFLLDDDFGCLRRAFALFELLLAYHDPALARHLAGAGFTPELYATPWILTLFSR 140
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BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Match: A0A5D6Y0Q7_9STRA (TBC1 domain family member 23 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0Q7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.310e-31
Identity = 60/137 (43.80%), Postives = 93/137 (67.88%), Query Frame = 1 
Query:    4 EDRRVLAADIKRTRQAYAMFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQVHDPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 414
            E+++V++AD  RTR     F++ E ++L++++L  YC   G+RYKQG NE++APF++L+  DPPLP  V+   F + + RF+   FVD E ++L  S++++R+LL Y DP L   LD+ D  PELY T W +TLF+R
Sbjct:  190 ENQKVISADACRTRGHDPFFRQPETVELIAKLLTYYCKCRGVRYKQGMNEVLAPFLILE-RDPPLPEGVVFQCFYALIDRFLPHVFVDREFKSLQCSFQLYRLLLLYHDPALCHYLDQHDMTPELYVTPWFMTLFAR 325
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BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Match: K3WLM6_GLOUD (TBC1 domain family member 23 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLM6_GLOUD)

HSP 1 Score: 124 bits (312), Expect = 2.130e-30
Identity = 58/137 (42.34%), Postives = 93/137 (67.88%), Query Frame = 1 
Query:    4 EDRRVLAADIKRTRQAYAMFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQVHDPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 414
            E+++V++AD  RTR     FK+ E ++LV+++L  YC    IRYKQG NE++APF++L+  DPP+P  ++   F + + +F+ + FVD E ++L  S++++R+L+ Y DP L   LD+ D  PELY T W +TLF+R
Sbjct:  215 ENQKVISADAIRTRGNDPYFKQPETVELVTKILTYYCKCRNIRYKQGMNEVLAPFLILE-RDPPMPEGIVFQCFYALIDKFLPQVFVDREFKSLQCSFQLYRLLMLYHDPKLCHYLDQHDMTPELYVTPWFMTLFAR 350
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BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Match: A0A8K1C6A6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6A6_PYTOL)

HSP 1 Score: 122 bits (307), Expect = 1.000e-29
Identity = 58/137 (42.34%), Postives = 93/137 (67.88%), Query Frame = 1 
Query:    4 EDRRVLAADIKRTRQAYAMFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQVHDPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 414
            E+++V++AD  RTR   A FK+ + ++LV+++L  YC    IRYKQG NE++APF+ML+  +PP+P  V+  +F + + +F+   F+D E ++L  S++++R+L+ Y DP L   LD+    PELY T W +TLFSR
Sbjct:  125 ENQKVISADACRTRGHDAFFKQPQTIELVTKLLTFYCKSRNIRYKQGMNEVLAPFLMLE-QNPPMPDSVVFQLFYALIDKFLPHVFIDREFKSLQCSFQLYRLLMRYHDPMLCNYLDQHAMTPELYVTPWFMTLFSR 260
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BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Match: D7FKI7_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 4.720e-29
Identity = 61/138 (44.20%), Postives = 88/138 (63.77%), Query Frame = 1 
Query:    4 EDRRVLAADIKRTRQAYAMFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQVHDPPLPVPVLGLMFESFMSRFVSRWF-VDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 414
            E++RV+  D++RTR A   FKR  V  L++++L  +C  HG+ YKQG +E++APFV L   DP LP   + L + +F+ RF+   F  D+E  +L + +R+FR+LL Y  P L R LD+    PELYAT W +TLFS 
Sbjct:   55 ENQRVVRVDVERTRPALDQFKRPRVKNLLARILTYHCKTHGLGYKQGMHEVLAPFVALS--DPELPTSDISLCYSAFLRRFLPYAFNQDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSN 190
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BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Match: A0A484E0M3_BRELC (TBC1 domain family member 23 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0M3_BRELC)

HSP 1 Score: 120 bits (301), Expect = 6.200e-29
Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    4 EDRRVLAADIKRTRQAYAMFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQVHDP------PLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 414
            +++RV+AAD  RTR    +F++ E ++LV ++L  YC    IRYKQG NE++APF++L    P      PLP  V+   F + + RF+   F+D E  +L  S  ++R+L+ Y DP L   LD+ D  PELY T W +TLF+R
Sbjct:  118 DNQRVIAADAIRTRSNERLFQKPETIELVVKLLTYYCKSRSIRYKQGMNEVLAPFLLLTEKRPESKGSTPLPEGVIFQCFHALIDRFLPHVFIDQEFRSLQCSLHLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFAR 260
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BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Match: A0A7S2W2Q6_9STRA (TBC1 domain family member 23 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W2Q6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 8.420e-29
Identity = 59/137 (43.07%), Postives = 90/137 (65.69%), Query Frame = 1 
Query:    4 EDRRVLAADIKRTRQAYAMFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQVHDPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 414
            E++RV+  D +RTR   A F+  E+  LVS++L  YC    I+YKQG NE++APF++L+  DPPLP   +  M+ +F+ +++   +V ++  AL  ++R+FR+LL Y DP L   LD  +  PELYAT W +TLF+R
Sbjct:  155 ENQRVIRVDAERTRADLAEFRTPEMQLLVSKLLTFYCKRKNIKYKQGLNEVLAPFLILRT-DPPLPDGTIFNMYYAFIEKYLRHIYVHEDFHALQCTFRLFRLLLQYHDPELCNHLDTHNLSPELYATPWFLTLFAR 290
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BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Match: A0A8J4SIU0_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4SIU0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.650e-27
Identity = 57/143 (39.86%), Postives = 86/143 (60.14%), Query Frame = 1 
Query:    4 EDRRVLAADIKRTRQAYAMFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVML------QVHDPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR 414
            +++RV+AAD  RTR     FK+ E ++LV ++L  YC    I+YKQG NE++APF++L           PL   V+   F + + +F+   FVD E  +L  S++++R+L+ Y DP L   LD+ D  PELY T W +TLF+R
Sbjct:   56 DNQRVIAADASRTRGNEPRFKQPETVELVIKLLTYYCKCRSIQYKQGMNEVLAPFLLLTEQREGSKESVPLAEGVVFQCFYALIDKFLPHVFVDREFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFAR 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11058.1433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN81_ECTSI1.270e-7098.32TBC1 domain family member 23 n=2 Tax=Ectocarpus Ta... [more]
A0A2R5GE11_9STRA8.070e-3348.18TBC1 domain family member 23 n=1 Tax=Hondaea ferme... [more]
A0A7S3YFA6_HETAK9.400e-3342.34Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6Y0Q7_9STRA1.310e-3143.80TBC1 domain family member 23 n=1 Tax=Pythium brass... [more]
K3WLM6_GLOUD2.130e-3042.34TBC1 domain family member 23 n=1 Tax=Globisporangi... [more]
A0A8K1C6A6_PYTOL1.000e-2942.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D7FKI7_ECTSI4.720e-2944.20Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
A0A484E0M3_BRELC6.200e-2941.26TBC1 domain family member 23 n=1 Tax=Bremia lactuc... [more]
A0A7S2W2Q6_9STRA8.420e-2943.07TBC1 domain family member 23 n=1 Tax=labyrinthulid... [more]
A0A8J4SIU0_9STRA2.650e-2739.86Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11058contigEcto-sp8_S_contig11058:212..816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score238.0
Seed ortholog evalue2.6e-60
Seed eggNOG ortholog2880.D8LN81
Preferred nameTBC1D23
Model size417
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001667,GO:0001817,GO:0001819,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007417,GO:0007420,GO:0008047,GO:0008150,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0030707,GO:0030855,GO:0031175,GO:0031347,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032675,GO:0032680,GO:0032755,GO:0040011,GO:0042147,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048568,GO:0048583,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050727,GO:0050789,GO:0050790,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060322,GO:0060429,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0080134,GO:0090130,GO:0090132,GO:0098772,GO:0098791,GO:0120036,GO:1903555,GO:1990403
Exons2
EggNOG free text desc.embryonic brain development
EggNOG OGsKOG3636@1,KOG3636@2759
Cds size417
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143191.0602138-CDS-Ecto-sp8_S_contig11058:211..4421681143191.0602138-CDS-Ecto-sp8_S_contig11058:211..442Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11058 212..442 -
1681143191.0726807-CDS-Ecto-sp8_S_contig11058:630..8161681143191.0726807-CDS-Ecto-sp8_S_contig11058:630..816Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11058 631..816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11058.1433.1prot_Ecto-sp8_S_contig11058.1433.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11058 212..816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11058.1433.1

>prot_Ecto-sp8_S_contig11058.1433.1 ID=prot_Ecto-sp8_S_contig11058.1433.1|Name=mRNA_Ecto-sp8_S_contig11058.1433.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=139bp
QEDRRVLAADIKRTRQAYAMFKREEVMQLVSQVLERYCVGHGIRYKQGQN
ELIAPFVMLQVHDPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYR
VFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSR*
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mRNA from alignment at Ecto-sp8_S_contig11058:212..816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11058.1433.1 ID=mRNA_Ecto-sp8_S_contig11058.1433.1|Name=mRNA_Ecto-sp8_S_contig11058.1433.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=605bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11058:212..816- (Ectocarpus species8 EcLAC_412)
CAGGAAGACCGACGGGTTCTGGCGGCCGACATCAAGCGGACCAGGCAGGC
GTACGCCATGTTCAAGCGGGAGGAGGTGATGCAGCTGGTCTCGCAGGTCC
TCGAGAGGTACTGCGTGGGGCACGGCATCCGCTACAAGCAGGGCCAGAAC
GAGCTCATCGCTCCCTTCGTCATGCTTCAGGTACATGTACCGTATGGCAC
ACGCTTCCTGTTGGGTAGGTGGGGAAGTTGGTCGTTCCTCACAGTACCTG
CTCCGACTTGAGATGTATGGCAGAGCTTTCCATGTGGGCACAAACGATCC
GATCCAAGTACCTGCCTACCACCTTGTCAGTTCCATAACACAATCCAACC
TGTATCTACCCCTCCCCCCTCCAGGACCCGCCGCTGCCCGTGCCGGTGCT
GGGGTTGATGTTCGAGTCCTTCATGAGCCGGTTTGTTAGCCGCTGGTTCG
TGGACGACGAGATAGAGGCCCTCTTGGTGAGCTACAGGGTGTTCCGCGTG
CTGCTGTTCTACGTCGACCCCGGCCTGGCGAGAAAGCTCGACGAGGCCGA
CTTCGTCCCGGAGCTGTACGCCACGGCGTGGCTCATCACCCTCTTCAGCA
GGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11058:212..816-

>mRNA_Ecto-sp8_S_contig11058.1433.1 ID=mRNA_Ecto-sp8_S_contig11058.1433.1|Name=mRNA_Ecto-sp8_S_contig11058.1433.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11058:212..816- (Ectocarpus species8 EcLAC_412)
CAGGAAGACCGACGGGTTCTGGCGGCCGACATCAAGCGGACCAGGCAGGC
GTACGCCATGTTCAAGCGGGAGGAGGTGATGCAGCTGGTCTCGCAGGTCC
TCGAGAGGTACTGCGTGGGGCACGGCATCCGCTACAAGCAGGGCCAGAAC
GAGCTCATCGCTCCCTTCGTCATGCTTCAGGTACATGACCCGCCGCTGCC
CGTGCCGGTGCTGGGGTTGATGTTCGAGTCCTTCATGAGCCGGTTTGTTA
GCCGCTGGTTCGTGGACGACGAGATAGAGGCCCTCTTGGTGAGCTACAGG
GTGTTCCGCGTGCTGCTGTTCTACGTCGACCCCGGCCTGGCGAGAAAGCT
CGACGAGGCCGACTTCGTCCCGGAGCTGTACGCCACGGCGTGGCTCATCA
CCCTCTTCAGCAGGTAG
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