mRNA_Ecto-sp8_S_contig11057.1432.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11057.1432.1
Unique NamemRNA_Ecto-sp8_S_contig11057.1432.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Match: D7FVA7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA7_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 1.960e-75
Identity = 153/163 (93.87%), Postives = 153/163 (93.87%), Query Frame = 1 
Query:    1 MKRAIATLMGGLMASEAFVLPAAVSRGLAAAGSXXXXXXXXXXXXXXXXXXXXXXQHSR----VAFLHKAGLATATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG 477
            MKRAIATLMGGLMASEAFVLPAAVSRGLAAAG XXXXXXXXXXXXXXXXXXXXXX        VAFLHKAGLA ATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG
Sbjct:    1 MKRAIATLMGGLMASEAFVLPAAVSRGLAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAFLHKAGLAAATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG 163
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BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Match: A0A7S2YE37_9STRA (Peptidylprolyl isomerase n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YE37_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.820e-22
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:  175 RVAFLHKAGLATATTVAAVTGSPLLARAEEEDEVKVGEE-VTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG 477
            R AF+H+       + A VTGS LL+      E   GE+ VTT+SGLKY V   G G+ P PG MVKAHYTGWL+ F  +   KFDSSRDRGRPFSFKVG G
Sbjct:   36 RRAFIHQVA-----STALVTGSALLSPQVTHAEDGSGEDWVTTESGLKYKVLKEGTGAVPEPGQMVKAHYTGWLDDF--DSPKKFDSSRDRGRPFSFKVGAG 130
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BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Match: A0A7S3PZM0_9STRA (Peptidylprolyl isomerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZM0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.070e-21
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:  172 SRVAFLHK----AGLATATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG 477
            SR +FL+K    A  A A  +AAV+ +P  A A++ D     +  TT+SGLKY VT  G G++P P   VKAHYTGWL+ F  E   KFDSSRDRGRPFSFKVG G
Sbjct:   47 SRRSFLNKGAITASTAAAAGIAAVSIAPKAALADDSDPY--ADYTTTESGLKYLVTKEGTGAQPVPNTNVKAHYTGWLDGFQSEK--KFDSSRDRGRPFSFKVGAG 148
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BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Match: K0T418_THAOC (Peptidylprolyl isomerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T418_THAOC)

HSP 1 Score: 97.1 bits (240), Expect = 2.020e-20
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:  166 QHSRVAFLHKAGLATATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG 477
            +H R  FL K+    A T +   G P +A+A+++        +TTDSG+KY VT  G G+ PSPG +VKAHYTGWL++F  E   KFDSSRDRGRPF FKVG G
Sbjct:   26 RHDRRDFLAKSS--AAVTASVFGGLPQIAKADDDF-------ITTDSGMKYKVTKEGDGAIPSPGQLVKAHYTGWLDSFDSEK--KFDSSRDRGRPFQFKVGQG 118
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BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Match: A0A7S2R5E6_9STRA (Peptidylprolyl isomerase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5E6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-19
Identity = 52/101 (51.49%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:  175 RVAFLHKAGLATATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG 477
            R AFL    +A +T + A  G   +A A  +D     E  TT+SGL++ VT  G G  P  G  VKAHYTGWL+ F  E   KFDSSRDRGRPFSFKVG G
Sbjct:   38 RRAFLQNGAVAASTALVAGVGRAPIALAASDDPYADFE--TTESGLRFKVTKEGTGETPPAGTTVKAHYTGWLDGFDSEK--KFDSSRDRGRPFSFKVGAG 134
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BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Match: A0A835ZFS8_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFS8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.310e-19
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  292 VTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGA-KFDSSRDRGRPFSFKVGTG 477
            +TT++GL+Y V   G G++P P + VKAHYTGWL  FGDED + KFDSSRDRGRPF+FK G G
Sbjct:   78 ITTETGLRYKVIKEGTGAQPPPSSNVKAHYTGWLGGFGDEDASVKFDSSRDRGRPFTFKAGVG 140
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BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Match: A0A7S0D774_9EUKA (Peptidylprolyl isomerase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D774_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 1.000e-18
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:  271 EVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG 477
            + ++G+ +TT SGL+Y   V G G+ P PG +VK HYTGWL  F D+   KFDSSRDRGRPFSF VGTG
Sbjct:   76 KAEMGQIITTPSGLQYYDVVEGTGAAPKPGQLVKVHYTGWLQGF-DQPANKFDSSRDRGRPFSFNVGTG 143
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BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Match: A0A6S8ZS26_9STRA (Peptidylprolyl isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZS26_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.090e-18
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:  205 ATATTVAAVTGSPLLARAEEEDEVK-VGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG 477
            A ATT + + G+ +L +A   D+     +  TT+SGLKY VT  G G+ P+ G  VKAHYTGWL+ F  +   KFDSSRDRGRPFSFKVG G
Sbjct:   48 AAATTSSVIIGNAVLPQAAIADDTDPYADFTTTESGLKYKVTKEGDGAIPAAGQTVKAHYTGWLDGF--DSIRKFDSSRDRGRPFSFKVGAG 137
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BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Match: B7FWT8_PHATC (Peptidylprolyl isomerase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWT8_PHATC)

HSP 1 Score: 87.0 bits (214), Expect = 1.430e-18
Identity = 51/101 (50.50%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:  175 RVAFLHKAGLATATTVAAVTGSPLLARAEEEDEVKVGEEVTTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG 477
            R  FL +   A+ + VAA    P +A+A+ +D     + +TT+SGLKY VT  G G+ P PG  VKAHYTGWL  F  E   KFDSSRDR RPF F+VG G
Sbjct:   27 RRTFLSQTAAASVSLVAA----PGVAKADGQDTYS--DFITTESGLKYKVTKEGTGAVPEPGQTVKAHYTGWLEGF--ESPKKFDSSRDRNRPFQFRVGAG 119
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BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Match: B8BZS4_THAPS (Peptidylprolyl isomerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZS4_THAPS)

HSP 1 Score: 84.0 bits (206), Expect = 5.360e-18
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:  295 TTDSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGRPFSFKVGTG 477
            TT+SG+KY VT  G G+ P    +VKAHYTGWL+ F  E G KFDSSRDRGRPF FKVG G
Sbjct:    4 TTESGMKYLVTKEGDGAIPQQNQLVKAHYTGWLDGF--ESGKKFDSSRDRGRPFQFKVGAG 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11057.1432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVA7_ECTSI1.960e-7593.87Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S2YE37_9STRA9.820e-2255.88Peptidylprolyl isomerase n=2 Tax=Amphiprora paludo... [more]
A0A7S3PZM0_9STRA2.070e-2153.77Peptidylprolyl isomerase n=1 Tax=Chaetoceros debil... [more]
K0T418_THAOC2.020e-2051.92Peptidylprolyl isomerase n=1 Tax=Thalassiosira oce... [more]
A0A7S2R5E6_9STRA2.600e-1951.49Peptidylprolyl isomerase n=1 Tax=Eucampia antarcti... [more]
A0A835ZFS8_9STRA8.310e-1963.49Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A7S0D774_9EUKA1.000e-1859.42Peptidylprolyl isomerase (Fragment) n=1 Tax=Amorph... [more]
A0A6S8ZS26_9STRA1.090e-1853.26Peptidylprolyl isomerase n=1 Tax=Ditylum brightwel... [more]
B7FWT8_PHATC1.430e-1850.50Peptidylprolyl isomerase n=3 Tax=Phaeodactylum tri... [more]
B8BZS4_THAPS5.360e-1865.57Peptidylprolyl isomerase (Fragment) n=1 Tax=Thalas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11057contigEcto-sp8_S_contig11057:4331..6609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score235.0
Seed ortholog evalue2.5e-59
Seed eggNOG ortholog2880.D7FVA7
Model size477
Hectar predicted targeting categorychloroplast
Exons3
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0545@1,KOG0549@2759
Cds size477
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143190.9991536-CDS-Ecto-sp8_S_contig11057:4330..44091681143190.9991536-CDS-Ecto-sp8_S_contig11057:4330..4409Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11057 4331..4409 +
1681143191.014931-CDS-Ecto-sp8_S_contig11057:5822..61281681143191.014931-CDS-Ecto-sp8_S_contig11057:5822..6128Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11057 5823..6128 +
1681143191.0271158-CDS-Ecto-sp8_S_contig11057:6517..66091681143191.0271158-CDS-Ecto-sp8_S_contig11057:6517..6609Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11057 6518..6609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11057.1432.1prot_Ecto-sp8_S_contig11057.1432.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11057 4331..6609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11057.1432.1

>prot_Ecto-sp8_S_contig11057.1432.1 ID=prot_Ecto-sp8_S_contig11057.1432.1|Name=mRNA_Ecto-sp8_S_contig11057.1432.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=159bp
MKRAIATLMGGLMASEAFVLPAAVSRGLAAAGSSSREVVSCSASTSSSSS
SQGGGQHSRVAFLHKAGLATATTVAAVTGSPLLARAEEEDEVKVGEEVTT
DSGLKYTVTVAGKGSKPSPGNMVKAHYTGWLNAFGDEDGAKFDSSRDRGR
PFSFKVGTG
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mRNA from alignment at Ecto-sp8_S_contig11057:4331..6609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11057.1432.1 ID=mRNA_Ecto-sp8_S_contig11057.1432.1|Name=mRNA_Ecto-sp8_S_contig11057.1432.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2279bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11057:4331..6609+ (Ectocarpus species8 EcLAC_412)
ATGAAGAGGGCCATTGCAACGCTGATGGGAGGCCTCATGGCCTCAGAGGC
TTTCGTCCTTCCAGCTGCAGTGAGCAGAGGTGGGATGTGACGATGTGACA
CACGGAATACAGCAGTAGCCCACACGTGTTTTTCTCTGACAGACACTACA
CACCTACATACACACCCGACACCGCCAACATGCACATGTTCGATGCCGCC
TGCTGTACAAATCTATCGACGTATGCTGATCGGCACCTCCTAGTACCCCG
GCCTTGTTTCCTCCGCACCACACCTCTTCTCGGTGCATAGGCTCGATGCA
ACAATAGCAGCCAGCTGGTGCTCAACACATGAAACCTTTTGGTGCGGTAC
AAATGAATTATCTCTCGACACCCTTTTTACTTGGCTGCTCAGTCTCCGGC
TGTGCTGGCTTTGTTGTGTTTGCCATGTCGGGAAGATACCAAACCGCCTA
GGGTCGATTCTCCAAGCTCAATCTTCCGAACGCCGGAAAGAGTTGGAAAG
GAACTTTGTGTACATATATCTTCGTTATCCCATACGGAGTACAATATGCA
TACTTTGTTTCATTACCGCATGTTGCGGAAGATACCACTCCCCCTGGATC
GATTTTTAGAGCTCGATTACTCTGCAGCAAAAACAGTCACGAGGCTGAAA
ATGGCGGCGTTGGAACGATCTGGTCTTGAGCTTTCCGAAAACGTATCATT
TGATCGCGGTATTCTTTTCGTCCGTGGAAAAATCGAAGTCTGATATTCGG
AGTCGGGGGTGTGGTATCTTACACTTTCACCTCGCAGAATGGTATGCGAA
CAACCTCGGGTACCCTGCGGCCTTTCCTGCCGAGGCGAAGGGCTCCGATC
CGGGGGACACGCATAAAGTTCTCTGCGGTAGATGTCTTCAACGTTTGGGG
CGGGGGGTGTAGTCTTACATCCATCATGTACACTCACTCACGAGCAAATC
GTGATGTCGTGATCCTCCAACCAATCGATATGAGGTTGGCAATCCGACAA
TAATTACATTGAGCTTCACCCTCCCAGAGAAATTGCCGCATCGACTTTCG
ATGTCTTTCGTTTGCCTTCAAATGACACCCGTGCTGCGTCTCAGGAGTGC
TTGATTTGATGGTTCCATGGACCAACTACTGTACAGCTACGGGTGGCAGG
CTCTTTCGATAAATGGCTGCAGCAACCACTGCCCCTTGTTGTGTGTTGGT
CGTGCCGTCGTACGGTGCCCTCTTTGAGGTTGTGCGCTCTCCACGTTTCC
CGTATTCAGCGCGAATCCAATCTACAGGATGCGTTTTCCTATCGCCCGAG
AAAGGGCAAGCTTCCTTCTCAAAATATGCCACAGCACGTCCAAAGACATA
AGCACCAGATGAAAACAGCCGAACCGAGGCGACCTCTCCTGTCTCGCCGA
CCTCTCGTCGTCTTGCACACCACGGCACCCTCATTTTGTTGGTCGACCTT
GTTACGCTCACCCAACCCTTCACCCATCATCCGTTGCCGCAGGTCTCGCC
GCAGCCGGGTCTTCCAGCCGCGAGGTCGTGAGCTGCTCTGCCTCAACTTC
ATCTTCCTCTTCCTCCCAGGGAGGCGGGCAGCACAGCCGCGTTGCTTTCC
TCCACAAGGCTGGGCTCGCGACGGCCACGACTGTTGCGGCGGTGACAGGC
TCTCCGCTGCTAGCTCGTGCCGAGGAGGAGGATGAGGTGAAGGTGGGAGA
GGAGGTTACCACCGACAGCGGCCTCAAGTACACCGTCACGGTTGCTGGAA
AGGGCTCCAAGCCTAGCCCTGGAAACATGGTCAAGGCCCACTACACCGGT
AAGCGTGTCATGTAGTCGTTCAAGTCGTATCGTTAGGAGCTTCCTTTTAG
CGTGCACTACTGTAGTACTGGTTAACACTCCGAATTTGCAGTACTGTGTG
TTCCCGAGTTGGTCAACGGGATCGGTGATACCGCCGAGGTACTGCTGCTG
TCGACCGTCACACCTACCGCGATCCCGCTACAATAACATCACTTTGAGAA
TTTTGTATGCTTGATGAGGGCCGTAAAGCCTGACTTCGTTTCGTTTCGGC
GCGACGTAAGATCAGAAAAAACGGCGAGCAGGATTAAATGACATGATGAC
TAGAAAAGTGTAGGCGTGTGTGCATTGTCATTTGGTTGCCTTTTCGCCCC
CGACACCGAGGACTATGTGTATTGTTTTCCGAACCAGGATGGCTGAATGC
CTTCGGCGATGAGGATGGCGCGAAGTTCGACTCATCCCGCGACAGGGGGA
GACCTTTCTCGTTCAAAGTGGGAACGGGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11057:4331..6609+

>mRNA_Ecto-sp8_S_contig11057.1432.1 ID=mRNA_Ecto-sp8_S_contig11057.1432.1|Name=mRNA_Ecto-sp8_S_contig11057.1432.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11057:4331..6609+ (Ectocarpus species8 EcLAC_412)
ATGAAGAGGGCCATTGCAACGCTGATGGGAGGCCTCATGGCCTCAGAGGC
TTTCGTCCTTCCAGCTGCAGTGAGCAGAGGTCTCGCCGCAGCCGGGTCTT
CCAGCCGCGAGGTCGTGAGCTGCTCTGCCTCAACTTCATCTTCCTCTTCC
TCCCAGGGAGGCGGGCAGCACAGCCGCGTTGCTTTCCTCCACAAGGCTGG
GCTCGCGACGGCCACGACTGTTGCGGCGGTGACAGGCTCTCCGCTGCTAG
CTCGTGCCGAGGAGGAGGATGAGGTGAAGGTGGGAGAGGAGGTTACCACC
GACAGCGGCCTCAAGTACACCGTCACGGTTGCTGGAAAGGGCTCCAAGCC
TAGCCCTGGAAACATGGTCAAGGCCCACTACACCGGATGGCTGAATGCCT
TCGGCGATGAGGATGGCGCGAAGTTCGACTCATCCCGCGACAGGGGGAGA
CCTTTCTCGTTCAAAGTGGGAACGGGA
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