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Homology
BLAST of mRNA_Ecto-sp8_S_contig1105.1424.1 vs. uniprot
Match: A0A6H5KPK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPK2_9PHAE) HSP 1 Score: 644 bits (1662), Expect = 5.660e-226 Identity = 458/562 (81.49%), Postives = 465/562 (82.74%), Query Frame = 2
Query: 89 MSGRTLRPAVASSACSLVIKHNERATDTGLSFETPKKWAPLQAPPKVAAAPVAFATDEFYDFGWPGEDETNLAEEKELDDLLRLGLELGDLECVFGNTDLNCDTADDDAEEGDSENAGDGGSDKGGGWGKEPYLAGDXXXXXXXXXEGGATEELLLDAD----------------------------LQDALFDLPDLDLDHLEDKGGRGQEKHGCGSDSPKSTRVDCGAEEAATEPPPDLEVLQQMSPAPSPPAATAAAVTATGSAALPVAPAXXSPVELPRRETPGALPGENLAVAFDAVGDEHRPITVVDLTDAPAPAHAPTVDAGGVAPSGVESNSGGKPDGANEHPESHPCRVTATGDTTIIDTRAVASVSADPVAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTAPALEDPALLGAAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWESGG 1690
MSGRTLRPA ASSACSLV KHNE ATDTGL FETPKKWAPLQAPPKV AAPVAFATDEF DFGWPG+DET LAE++ELDDLLRLGLELGDLECVFGNTDLNCDTADDDAEEGD ENAGDGGSD+GGGWGKEPY A GGATEELLLD D LQDALFDLPDLDLD LEDKG RGQEKHGCGSDSPKST+VDCGAEEAAT+PPPDLEVLQQMSPA XXSP ELPRRETPGALPGENL VAFDAVGDEHRPITVVDLTDAPAP PTVDAGGVAPS E NS GKPDGANEH ES CR+T T D TIIDTRA ASVSAD VAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RTAPALEDPALL AAPAT XXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYW SGG
Sbjct: 1 MSGRTLRPAAASSACSLVTKHNEGATDTGLPFETPKKWAPLQAPPKVIAAPVAFATDEFADFGWPGDDETKLAEKEELDDLLRLGLELGDLECVFGNTDLNCDTADDDAEEGDFENAGDGGSDRGGGWGKEPYFA------------GGATEELLLDTDDXXXXXXXXXXXXXXXXXXXXXXXXXXDLQDALFDLPDLDLDRLEDKGDRGQEKHGCGSDSPKSTQVDCGAEEAATKPPPDLEVLQQMSPAXXXXXXXXXXXXXXXXXXXXXXXXXXSPAELPRRETPGALPGENLVVAFDAVGDEHRPITVVDLTDAPAPXXXPTVDAGGVAPSDSEDNSDGKPDGANEHRESRACRMTDTVDITIIDTRAGASVSADAVAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RTAPALEDPALLVAAPATGXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWGSGG 549
BLAST of mRNA_Ecto-sp8_S_contig1105.1424.1 vs. uniprot
Match: D7FLV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV8_ECTSI) HSP 1 Score: 323 bits (827), Expect = 2.850e-103 Identity = 266/285 (93.33%), Postives = 268/285 (94.04%), Query Frame = 2
Query: 836 PVELPRRETPGALPGENLAVAFDAVGDEHRPITVVDLTDAPAPAHAPTVDAGGVAPSGVESNSGGKPDGANEHPESHPCRVTATGDTTIIDTRAVASVSADPVAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTAPALEDPALLGAAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWESGG 1690
P ELPRRETPGALPGENLAVAFDAV DEHRPITVVDLTDAPA PTVDAGGV+PSGVE NS GKPDG NEH ES PCR+TATGDTTIID RAVASVSADP AGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RTAPALEDPALL AAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYW SGG
Sbjct: 32 PAELPRRETPGALPGENLAVAFDAVRDEHRPITVVDLTDAPAXXXXPTVDAGGVSPSGVERNSDGKPDGDNEHRESRPCRMTATGDTTIIDARAVASVSADPAAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RTAPALEDPALLVAAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWGSGG 314
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1693 |
| Hectar predicted targeting category | mitochondrion |
| Exons | 3 |
| Cds size | 1605 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143190.5317621-UTR-Ecto-sp8_S_contig1105:9666..9754 | 1681143190.5317621-UTR-Ecto-sp8_S_contig1105:9666..9754 | Ectocarpus species8 EcLAC_412 | UTR | Ecto-sp8_S_contig1105 9667..9754 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143190.546031-CDS-Ecto-sp8_S_contig1105:9754..10163 | 1681143190.546031-CDS-Ecto-sp8_S_contig1105:9754..10163 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig1105 9755..10163 + |
| 1681143190.5598402-CDS-Ecto-sp8_S_contig1105:10211..10286 | 1681143190.5598402-CDS-Ecto-sp8_S_contig1105:10211..10286 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig1105 10212..10286 + |
| 1681143190.573778-CDS-Ecto-sp8_S_contig1105:12442..13563 | 1681143190.573778-CDS-Ecto-sp8_S_contig1105:12442..13563 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig1105 12443..13563 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1105.1424.1 >prot_Ecto-sp8_S_contig1105.1424.1 ID=prot_Ecto-sp8_S_contig1105.1424.1|Name=mRNA_Ecto-sp8_S_contig1105.1424.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=535bp
MSGRTLRPAVASSACSLVIKHNERATDTGLSFETPKKWAPLQAPPKVAAA PVAFATDEFYDFGWPGEDETNLAEEKELDDLLRLGLELGDLECVFGNTDL NCDTADDDAEEGDSENAGDGGSDKGGGWGKEPYLAGDGGWGTEPNLEGGA TEELLLDADLQDALFDLPDLDLDHLEDKGGRGQEKHGCGSDSPKSTRVDC GAEEAATEPPPDLEVLQQMSPAPSPPAATAAAVTATGSAALPVAPAPPSP VELPRRETPGALPGENLAVAFDAVGDEHRPITVVDLTDAPAPAHAPTVDA GGVAPSGVESNSGGKPDGANEHPESHPCRVTATGDTTIIDTRAVASVSAD PVAGVPTRLLDAVDLWESAANAKKKKAAAAAAAAAAARERANRSAAMNKL SNTASSSSSSSSSSSKKNEFGKRRRSSGGGGRTAPALEDPALLGAAPATA TSTTTGGGGGSVSKVKGKGKGRATKGKKVDPLVTLRDARGMARKPLIVQW LKSDGCESDEEAEAALGKAVGSLSAISRYWESGG* back to topmRNA from alignment at Ecto-sp8_S_contig1105:9667..13563+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig1105.1424.1 ID=mRNA_Ecto-sp8_S_contig1105.1424.1|Name=mRNA_Ecto-sp8_S_contig1105.1424.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3897bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1105:9667..13563+ (Ectocarpus species8 EcLAC_412) ACACGCAGCACCGACAGCCAACACTAACAAACACCCAAGAGGACGAGAGA
CACGAGGACAGGCCCTTCCCATCTGATCTCAGCTTGATATGTCGGGGAGG
ACGCTGCGTCCTGCAGTAGCTTCTTCGGCGTGCAGTCTCGTCATCAAGCA
CAACGAGAGAGCCACCGACACCGGCCTGTCTTTCGAGACCCCGAAAAAAT
GGGCACCTCTGCAAGCACCTCCGAAAGTTGCTGCTGCTCCCGTTGCCTTT
GCCACGGATGAGTTCTATGACTTTGGTTGGCCGGGGGAAGATGAGACTAA
CTTGGCCGAAGAGAAAGAGCTCGATGACCTCCTGCGCCTAGGACTGGAGC
TCGGAGATCTGGAATGCGTGTTCGGCAACACAGATCTGAACTGCGATACA
GCAGATGATGACGCCGAAGAAGGCGATTCCGAAAATGCGGGTGATGGTGG
GAGCGACAAAGGAGGGGGGTGGGGCAAGGAGCCGTACCTCGCGGGAGGTG
CTACCGAGGAGCTGCTGCTAGATGCTGATGGCGGGAGCGGCGAAGACGGG
GGGTGGGGTACGGAGCCGAACCTCGAGGGAGGTGCTACGGAGGAGCTGCT
GCTAGACGCTGATTTGCAAGGTGCGCGTTTTGCAAAATACATCATTAGAC
TAAAACTGCTGTAACTCCCCTTCTCGCCTCTCGTGTGCGGGTCCTTTTCA
TACTTCGCGCGGTGTTTTTAGTATATATTGCTGTAGGCTCGCACGGACCC
GTGCATACGGTATATAATTAAATGTCCGTTGTCTGTACTGCTGCAGTGAA
TTCCAAAAGGAGTGCATCGGTGTTTTGAGTATAAATAAATCCCGAATAGA
GCTGGTCTCCGTAAACACTCGATCTTTTTTTTCCTGTTCGGTGTCATTTT
TATGCGCACACAGCGATCTGGTCTTCTCGAGCTACGGCACACGTCTGAGC
TTGAAAGAAAAAAAATAAGTGATGCATTAGCTGAATTAGGGTTAGGGTTA
TTTTCCTGGCAGCGAGATGGGAGCAGAGGGGGCGGAGTGTAGAACAAACA
TGAAGGAGTGAGGCGTTTTTTCGTTTTTCAACTCTGCCGGTGGCGGACCA
TCGGCCTGATAATCAGTACCAGTAGTATTTATTTTTTTTCTCAAAATATA
GCGCAACGAATCCATCTCTATCCATAGAAACGTCCAGGATTTATCGGCAA
TGAGTTAATAGCGTTAGCGGGGTGCTATAACCTGTGTCTCTACGATTTCC
CATAGCAGCATATAGCGATGTCTCCCCTGTGGGTGGCAGATTTCGTTATT
TTTGTCTTGTATGCATAGGAAGGCCGTTTGCTACAGTTCATGCCACCAAT
TCCAAAGAAAAAAGGCTTGCGGGGATCAGGGCTTTCTGCTGGGCTCCTCT
TTTATGTTCTGCTGGACTTCTCTTGTAGAAGTATGTGCCGATCCGCCGAT
CCGGGCAACCGTGTTCGGTATCCCAATCGAACAGCAAACACGATCTCCAT
GGACGGACATTTTTTTTCTTTTGCTCACACAAACGAAGCGACCCCAGCAT
CTAGCTTTCCGAACCCGTCACTGCGGAAGAACGAAGCCCCCTTGCCAAGT
TAGGGACTGTGTACGTCAAACCGGGGATATTGGACGGCGGCCACGTCCAC
AACTCTACGGGACCACGCAGCCGTAGTTCGAGCCGTACGCCCTCCAGCGT
GCTCAACAATTCTATGAGATGGTGCATAGGTTGGAAGGGGCTTGGCGCCG
AATTCGCCGCGTATTGTGCGGAACGTTCCACGGTCTTGTCACAGTAGGGA
GGCAGAAAGAACGGCGTGTCTCTCGCAGCTAACAAGGATGTGTGTTCAAT
ACCATGTTGTCCTTTGGCGAGACCGGGCATTGTTCGTGCTGGTGTCCCCT
CTGTGTGGCGAGCAGTATTGGTGCGACTGGACGTTTGCCATGGAAGCTGT
TGAGTGGCAGCCCGCCGGTAAAAAGGAAACGATTAAGCACGCTGTTTGTC
GTCGTGGACACATTGAACTTTTGTTGCTAGCCTTGAGGACCAGTACAAGG
TGGTTGTTGGGGTAACAGTTCCAGGAGAAACAACACCCAATTTCCAAGAA
CGCCTCCATATCTGCCGGCAGGATCACAGGTTGACACATATATACTGCCC
GAGGACTTTCGATACCGTGGGCACCAAGATGCAAAGAATCTTGGACCTCG
TGCTGCTGCCGTGACACGATATTCGTGTTTCTTCTCGCTTCCCCGGCGGA
AAACATTTAGATGATGCTACGCTCAATGTTTCGGATGTCAAGATACGGCA
TTTCCGCGACATGTTCTTCCATATCTTCTCTCGTTTGCGGCACGCCGTTT
CCCAGCTAGTCTTGTTATGTTTCGTGCTTGCAAGTTCGGACATAAATAGT
TTTTCTTGGGCTAGAGCGTGGAACGCCGAATTGATAAAGCGTACGGAAAT
GGATAGTGATTATTGCTTGACATCCCATTCTGTTGCCACCTTGTTCTCGA
TTCAAGGTCCAGTGAGCATGGCCTGGGTTTGTCCCCAGACAGCTTCAGGT
GGAAGCATTGCTGACTTCTGCTCTCTGCGTGCAGCAGCTGGATAAAAAAA
AACACTCTGAAGCAGTATCCATCTATATATGAGAAAACACGTTCACCCTT
TCGAAATCTTCTTGAGCAGTTTTTGGACTCGCGTCTTCACCTTGCCCCCC
AACCCCCTCCGCCCTCCCTTTGCCTCTCTCTCTCCGGCCGCGCCGACCGA
CAAACCGTACGGCATGCCTCCTGCAGATGCACTGTTCGATTTGCCAGACC
TCGATTTGGACCACCTCGAAGACAAGGGGGGCCGCGGACAGGAAAAGCAC
GGGTGCGGCAGCGACAGCCCGAAGAGCACGCGAGTCGACTGCGGTGCCGA
AGAGGCCGCCACCGAGCCCCCCCCGGACCTCGAGGTCCTCCAGCAAATGT
CCCCCGCGCCCTCCCCGCCCGCAGCAACCGCCGCCGCCGTGACAGCCACG
GGCTCGGCAGCGTTACCGGTCGCCCCGGCCCCGCCGTCCCCGGTGGAACT
CCCCCGGCGGGAGACGCCCGGCGCGCTTCCCGGAGAAAACCTTGCCGTTG
CTTTCGACGCCGTCGGGGACGAACACCGCCCGATCACCGTGGTGGACCTC
ACCGATGCGCCCGCGCCTGCTCACGCTCCGACGGTGGATGCGGGAGGAGT
CGCACCGTCTGGCGTGGAGAGCAATAGCGGCGGAAAACCTGACGGCGCCA
ACGAACACCCCGAAAGCCACCCTTGTAGGGTGACGGCCACCGGCGACACC
ACCATTATCGATACTCGAGCTGTTGCCTCTGTTTCGGCGGACCCCGTTGC
CGGGGTGCCTACGCGCCTTCTCGACGCGGTCGATCTGTGGGAGAGCGCTG
CAAACGCCAAGAAGAAGAAGGCCGCCGCCGCCGCGGCGGCGGCGGCGGCG
GCTCGTGAGCGCGCGAACCGGTCAGCGGCGATGAACAAGCTCAGCAACAC
CGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAAGAACGAGT
TCGGCAAGCGGCGCCGAAGCAGCGGCGGTGGCGGGCGCACTGCGCCGGCT
CTGGAGGACCCCGCGCTGCTAGGCGCCGCCCCCGCTACGGCCACCAGCAC
CACCACCGGCGGCGGCGGCGGTTCAGTCAGCAAGGTCAAAGGGAAGGGGA
AGGGGAGGGCGACCAAGGGCAAGAAGGTGGACCCCCTGGTGACCCTTCGA
GACGCGAGGGGCATGGCGAGGAAGCCGCTGATCGTGCAATGGCTCAAGTC
GGACGGCTGCGAGAGCGACGAGGAGGCAGAGGCCGCGTTGGGCAAGGCCG
TCGGGAGCCTCTCGGCGATCTCCCGGTACTGGGAAAGCGGGGGCTGA back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig1105:9667..13563+ >mRNA_Ecto-sp8_S_contig1105.1424.1 ID=mRNA_Ecto-sp8_S_contig1105.1424.1|Name=mRNA_Ecto-sp8_S_contig1105.1424.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1605bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1105:9667..13563+ (Ectocarpus species8 EcLAC_412) ATGTCGGGGAGGACGCTGCGTCCTGCAGTAGCTTCTTCGGCGTGCAGTCT CGTCATCAAGCACAACGAGAGAGCCACCGACACCGGCCTGTCTTTCGAGA CCCCGAAAAAATGGGCACCTCTGCAAGCACCTCCGAAAGTTGCTGCTGCT CCCGTTGCCTTTGCCACGGATGAGTTCTATGACTTTGGTTGGCCGGGGGA AGATGAGACTAACTTGGCCGAAGAGAAAGAGCTCGATGACCTCCTGCGCC TAGGACTGGAGCTCGGAGATCTGGAATGCGTGTTCGGCAACACAGATCTG AACTGCGATACAGCAGATGATGACGCCGAAGAAGGCGATTCCGAAAATGC GGGTGATGGTGGGAGCGACAAAGGAGGGGGGTGGGGCAAGGAGCCGTACC TCGCGGGAGACGGGGGGTGGGGTACGGAGCCGAACCTCGAGGGAGGTGCT ACGGAGGAGCTGCTGCTAGACGCTGATTTGCAAGATGCACTGTTCGATTT GCCAGACCTCGATTTGGACCACCTCGAAGACAAGGGGGGCCGCGGACAGG AAAAGCACGGGTGCGGCAGCGACAGCCCGAAGAGCACGCGAGTCGACTGC GGTGCCGAAGAGGCCGCCACCGAGCCCCCCCCGGACCTCGAGGTCCTCCA GCAAATGTCCCCCGCGCCCTCCCCGCCCGCAGCAACCGCCGCCGCCGTGA CAGCCACGGGCTCGGCAGCGTTACCGGTCGCCCCGGCCCCGCCGTCCCCG GTGGAACTCCCCCGGCGGGAGACGCCCGGCGCGCTTCCCGGAGAAAACCT TGCCGTTGCTTTCGACGCCGTCGGGGACGAACACCGCCCGATCACCGTGG TGGACCTCACCGATGCGCCCGCGCCTGCTCACGCTCCGACGGTGGATGCG GGAGGAGTCGCACCGTCTGGCGTGGAGAGCAATAGCGGCGGAAAACCTGA CGGCGCCAACGAACACCCCGAAAGCCACCCTTGTAGGGTGACGGCCACCG GCGACACCACCATTATCGATACTCGAGCTGTTGCCTCTGTTTCGGCGGAC CCCGTTGCCGGGGTGCCTACGCGCCTTCTCGACGCGGTCGATCTGTGGGA GAGCGCTGCAAACGCCAAGAAGAAGAAGGCCGCCGCCGCCGCGGCGGCGG CGGCGGCGGCTCGTGAGCGCGCGAACCGGTCAGCGGCGATGAACAAGCTC AGCAACACCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAA GAACGAGTTCGGCAAGCGGCGCCGAAGCAGCGGCGGTGGCGGGCGCACTG CGCCGGCTCTGGAGGACCCCGCGCTGCTAGGCGCCGCCCCCGCTACGGCC ACCAGCACCACCACCGGCGGCGGCGGCGGTTCAGTCAGCAAGGTCAAAGG GAAGGGGAAGGGGAGGGCGACCAAGGGCAAGAAGGTGGACCCCCTGGTGA CCCTTCGAGACGCGAGGGGCATGGCGAGGAAGCCGCTGATCGTGCAATGG CTCAAGTCGGACGGCTGCGAGAGCGACGAGGAGGCAGAGGCCGCGTTGGG CAAGGCCGTCGGGAGCCTCTCGGCGATCTCCCGGTACTGGGAAAGCGGGG GCTGA back to top
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