mRNA_Ecto-sp8_S_contig1105.1424.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1105.1424.1
Unique NamemRNA_Ecto-sp8_S_contig1105.1424.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig1105.1424.1 vs. uniprot
Match: A0A6H5KPK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPK2_9PHAE)

HSP 1 Score: 644 bits (1662), Expect = 5.660e-226
Identity = 458/562 (81.49%), Postives = 465/562 (82.74%), Query Frame = 2
Query:   89 MSGRTLRPAVASSACSLVIKHNERATDTGLSFETPKKWAPLQAPPKVAAAPVAFATDEFYDFGWPGEDETNLAEEKELDDLLRLGLELGDLECVFGNTDLNCDTADDDAEEGDSENAGDGGSDKGGGWGKEPYLAGDXXXXXXXXXEGGATEELLLDAD----------------------------LQDALFDLPDLDLDHLEDKGGRGQEKHGCGSDSPKSTRVDCGAEEAATEPPPDLEVLQQMSPAPSPPAATAAAVTATGSAALPVAPAXXSPVELPRRETPGALPGENLAVAFDAVGDEHRPITVVDLTDAPAPAHAPTVDAGGVAPSGVESNSGGKPDGANEHPESHPCRVTATGDTTIIDTRAVASVSADPVAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTAPALEDPALLGAAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWESGG 1690
            MSGRTLRPA ASSACSLV KHNE ATDTGL FETPKKWAPLQAPPKV AAPVAFATDEF DFGWPG+DET LAE++ELDDLLRLGLELGDLECVFGNTDLNCDTADDDAEEGD ENAGDGGSD+GGGWGKEPY A            GGATEELLLD D                            LQDALFDLPDLDLD LEDKG RGQEKHGCGSDSPKST+VDCGAEEAAT+PPPDLEVLQQMSPA                        XXSP ELPRRETPGALPGENL VAFDAVGDEHRPITVVDLTDAPAP   PTVDAGGVAPS  E NS GKPDGANEH ES  CR+T T D TIIDTRA ASVSAD VAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RTAPALEDPALL AAPAT XXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYW SGG
Sbjct:    1 MSGRTLRPAAASSACSLVTKHNEGATDTGLPFETPKKWAPLQAPPKVIAAPVAFATDEFADFGWPGDDETKLAEKEELDDLLRLGLELGDLECVFGNTDLNCDTADDDAEEGDFENAGDGGSDRGGGWGKEPYFA------------GGATEELLLDTDDXXXXXXXXXXXXXXXXXXXXXXXXXXDLQDALFDLPDLDLDRLEDKGDRGQEKHGCGSDSPKSTQVDCGAEEAATKPPPDLEVLQQMSPAXXXXXXXXXXXXXXXXXXXXXXXXXXSPAELPRRETPGALPGENLVVAFDAVGDEHRPITVVDLTDAPAPXXXPTVDAGGVAPSDSEDNSDGKPDGANEHRESRACRMTDTVDITIIDTRAGASVSADAVAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RTAPALEDPALLVAAPATGXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWGSGG 549          
BLAST of mRNA_Ecto-sp8_S_contig1105.1424.1 vs. uniprot
Match: D7FLV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV8_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 2.850e-103
Identity = 266/285 (93.33%), Postives = 268/285 (94.04%), Query Frame = 2
Query:  836 PVELPRRETPGALPGENLAVAFDAVGDEHRPITVVDLTDAPAPAHAPTVDAGGVAPSGVESNSGGKPDGANEHPESHPCRVTATGDTTIIDTRAVASVSADPVAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTAPALEDPALLGAAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWESGG 1690
            P ELPRRETPGALPGENLAVAFDAV DEHRPITVVDLTDAPA    PTVDAGGV+PSGVE NS GKPDG NEH ES PCR+TATGDTTIID RAVASVSADP AGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RTAPALEDPALL AAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYW SGG
Sbjct:   32 PAELPRRETPGALPGENLAVAFDAVRDEHRPITVVDLTDAPAXXXXPTVDAGGVSPSGVERNSDGKPDGDNEHRESRPCRMTATGDTTIIDARAVASVSADPAAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RTAPALEDPALLVAAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWGSGG 314          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1105.1424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPK2_9PHAE5.660e-22681.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLV8_ECTSI2.850e-10393.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1105contigEcto-sp8_S_contig1105:9667..13563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1693
Hectar predicted targeting categorymitochondrion
Exons3
Cds size1605
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143190.5317621-UTR-Ecto-sp8_S_contig1105:9666..97541681143190.5317621-UTR-Ecto-sp8_S_contig1105:9666..9754Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1105 9667..9754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143190.546031-CDS-Ecto-sp8_S_contig1105:9754..101631681143190.546031-CDS-Ecto-sp8_S_contig1105:9754..10163Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1105 9755..10163 +
1681143190.5598402-CDS-Ecto-sp8_S_contig1105:10211..102861681143190.5598402-CDS-Ecto-sp8_S_contig1105:10211..10286Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1105 10212..10286 +
1681143190.573778-CDS-Ecto-sp8_S_contig1105:12442..135631681143190.573778-CDS-Ecto-sp8_S_contig1105:12442..13563Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1105 12443..13563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1105.1424.1prot_Ecto-sp8_S_contig1105.1424.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1105 9755..13563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1105.1424.1

>prot_Ecto-sp8_S_contig1105.1424.1 ID=prot_Ecto-sp8_S_contig1105.1424.1|Name=mRNA_Ecto-sp8_S_contig1105.1424.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=535bp
MSGRTLRPAVASSACSLVIKHNERATDTGLSFETPKKWAPLQAPPKVAAA
PVAFATDEFYDFGWPGEDETNLAEEKELDDLLRLGLELGDLECVFGNTDL
NCDTADDDAEEGDSENAGDGGSDKGGGWGKEPYLAGDGGWGTEPNLEGGA
TEELLLDADLQDALFDLPDLDLDHLEDKGGRGQEKHGCGSDSPKSTRVDC
GAEEAATEPPPDLEVLQQMSPAPSPPAATAAAVTATGSAALPVAPAPPSP
VELPRRETPGALPGENLAVAFDAVGDEHRPITVVDLTDAPAPAHAPTVDA
GGVAPSGVESNSGGKPDGANEHPESHPCRVTATGDTTIIDTRAVASVSAD
PVAGVPTRLLDAVDLWESAANAKKKKAAAAAAAAAAARERANRSAAMNKL
SNTASSSSSSSSSSSKKNEFGKRRRSSGGGGRTAPALEDPALLGAAPATA
TSTTTGGGGGSVSKVKGKGKGRATKGKKVDPLVTLRDARGMARKPLIVQW
LKSDGCESDEEAEAALGKAVGSLSAISRYWESGG*
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mRNA from alignment at Ecto-sp8_S_contig1105:9667..13563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1105.1424.1 ID=mRNA_Ecto-sp8_S_contig1105.1424.1|Name=mRNA_Ecto-sp8_S_contig1105.1424.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3897bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1105:9667..13563+ (Ectocarpus species8 EcLAC_412)
ACACGCAGCACCGACAGCCAACACTAACAAACACCCAAGAGGACGAGAGA CACGAGGACAGGCCCTTCCCATCTGATCTCAGCTTGATATGTCGGGGAGG ACGCTGCGTCCTGCAGTAGCTTCTTCGGCGTGCAGTCTCGTCATCAAGCA CAACGAGAGAGCCACCGACACCGGCCTGTCTTTCGAGACCCCGAAAAAAT GGGCACCTCTGCAAGCACCTCCGAAAGTTGCTGCTGCTCCCGTTGCCTTT GCCACGGATGAGTTCTATGACTTTGGTTGGCCGGGGGAAGATGAGACTAA CTTGGCCGAAGAGAAAGAGCTCGATGACCTCCTGCGCCTAGGACTGGAGC TCGGAGATCTGGAATGCGTGTTCGGCAACACAGATCTGAACTGCGATACA GCAGATGATGACGCCGAAGAAGGCGATTCCGAAAATGCGGGTGATGGTGG GAGCGACAAAGGAGGGGGGTGGGGCAAGGAGCCGTACCTCGCGGGAGGTG CTACCGAGGAGCTGCTGCTAGATGCTGATGGCGGGAGCGGCGAAGACGGG GGGTGGGGTACGGAGCCGAACCTCGAGGGAGGTGCTACGGAGGAGCTGCT GCTAGACGCTGATTTGCAAGGTGCGCGTTTTGCAAAATACATCATTAGAC TAAAACTGCTGTAACTCCCCTTCTCGCCTCTCGTGTGCGGGTCCTTTTCA TACTTCGCGCGGTGTTTTTAGTATATATTGCTGTAGGCTCGCACGGACCC GTGCATACGGTATATAATTAAATGTCCGTTGTCTGTACTGCTGCAGTGAA TTCCAAAAGGAGTGCATCGGTGTTTTGAGTATAAATAAATCCCGAATAGA GCTGGTCTCCGTAAACACTCGATCTTTTTTTTCCTGTTCGGTGTCATTTT TATGCGCACACAGCGATCTGGTCTTCTCGAGCTACGGCACACGTCTGAGC TTGAAAGAAAAAAAATAAGTGATGCATTAGCTGAATTAGGGTTAGGGTTA TTTTCCTGGCAGCGAGATGGGAGCAGAGGGGGCGGAGTGTAGAACAAACA TGAAGGAGTGAGGCGTTTTTTCGTTTTTCAACTCTGCCGGTGGCGGACCA TCGGCCTGATAATCAGTACCAGTAGTATTTATTTTTTTTCTCAAAATATA GCGCAACGAATCCATCTCTATCCATAGAAACGTCCAGGATTTATCGGCAA TGAGTTAATAGCGTTAGCGGGGTGCTATAACCTGTGTCTCTACGATTTCC CATAGCAGCATATAGCGATGTCTCCCCTGTGGGTGGCAGATTTCGTTATT TTTGTCTTGTATGCATAGGAAGGCCGTTTGCTACAGTTCATGCCACCAAT TCCAAAGAAAAAAGGCTTGCGGGGATCAGGGCTTTCTGCTGGGCTCCTCT TTTATGTTCTGCTGGACTTCTCTTGTAGAAGTATGTGCCGATCCGCCGAT CCGGGCAACCGTGTTCGGTATCCCAATCGAACAGCAAACACGATCTCCAT GGACGGACATTTTTTTTCTTTTGCTCACACAAACGAAGCGACCCCAGCAT CTAGCTTTCCGAACCCGTCACTGCGGAAGAACGAAGCCCCCTTGCCAAGT TAGGGACTGTGTACGTCAAACCGGGGATATTGGACGGCGGCCACGTCCAC AACTCTACGGGACCACGCAGCCGTAGTTCGAGCCGTACGCCCTCCAGCGT GCTCAACAATTCTATGAGATGGTGCATAGGTTGGAAGGGGCTTGGCGCCG AATTCGCCGCGTATTGTGCGGAACGTTCCACGGTCTTGTCACAGTAGGGA GGCAGAAAGAACGGCGTGTCTCTCGCAGCTAACAAGGATGTGTGTTCAAT ACCATGTTGTCCTTTGGCGAGACCGGGCATTGTTCGTGCTGGTGTCCCCT CTGTGTGGCGAGCAGTATTGGTGCGACTGGACGTTTGCCATGGAAGCTGT TGAGTGGCAGCCCGCCGGTAAAAAGGAAACGATTAAGCACGCTGTTTGTC GTCGTGGACACATTGAACTTTTGTTGCTAGCCTTGAGGACCAGTACAAGG TGGTTGTTGGGGTAACAGTTCCAGGAGAAACAACACCCAATTTCCAAGAA CGCCTCCATATCTGCCGGCAGGATCACAGGTTGACACATATATACTGCCC GAGGACTTTCGATACCGTGGGCACCAAGATGCAAAGAATCTTGGACCTCG TGCTGCTGCCGTGACACGATATTCGTGTTTCTTCTCGCTTCCCCGGCGGA AAACATTTAGATGATGCTACGCTCAATGTTTCGGATGTCAAGATACGGCA TTTCCGCGACATGTTCTTCCATATCTTCTCTCGTTTGCGGCACGCCGTTT CCCAGCTAGTCTTGTTATGTTTCGTGCTTGCAAGTTCGGACATAAATAGT TTTTCTTGGGCTAGAGCGTGGAACGCCGAATTGATAAAGCGTACGGAAAT GGATAGTGATTATTGCTTGACATCCCATTCTGTTGCCACCTTGTTCTCGA TTCAAGGTCCAGTGAGCATGGCCTGGGTTTGTCCCCAGACAGCTTCAGGT GGAAGCATTGCTGACTTCTGCTCTCTGCGTGCAGCAGCTGGATAAAAAAA AACACTCTGAAGCAGTATCCATCTATATATGAGAAAACACGTTCACCCTT TCGAAATCTTCTTGAGCAGTTTTTGGACTCGCGTCTTCACCTTGCCCCCC AACCCCCTCCGCCCTCCCTTTGCCTCTCTCTCTCCGGCCGCGCCGACCGA CAAACCGTACGGCATGCCTCCTGCAGATGCACTGTTCGATTTGCCAGACC TCGATTTGGACCACCTCGAAGACAAGGGGGGCCGCGGACAGGAAAAGCAC GGGTGCGGCAGCGACAGCCCGAAGAGCACGCGAGTCGACTGCGGTGCCGA AGAGGCCGCCACCGAGCCCCCCCCGGACCTCGAGGTCCTCCAGCAAATGT CCCCCGCGCCCTCCCCGCCCGCAGCAACCGCCGCCGCCGTGACAGCCACG GGCTCGGCAGCGTTACCGGTCGCCCCGGCCCCGCCGTCCCCGGTGGAACT CCCCCGGCGGGAGACGCCCGGCGCGCTTCCCGGAGAAAACCTTGCCGTTG CTTTCGACGCCGTCGGGGACGAACACCGCCCGATCACCGTGGTGGACCTC ACCGATGCGCCCGCGCCTGCTCACGCTCCGACGGTGGATGCGGGAGGAGT CGCACCGTCTGGCGTGGAGAGCAATAGCGGCGGAAAACCTGACGGCGCCA ACGAACACCCCGAAAGCCACCCTTGTAGGGTGACGGCCACCGGCGACACC ACCATTATCGATACTCGAGCTGTTGCCTCTGTTTCGGCGGACCCCGTTGC CGGGGTGCCTACGCGCCTTCTCGACGCGGTCGATCTGTGGGAGAGCGCTG CAAACGCCAAGAAGAAGAAGGCCGCCGCCGCCGCGGCGGCGGCGGCGGCG GCTCGTGAGCGCGCGAACCGGTCAGCGGCGATGAACAAGCTCAGCAACAC CGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAAGAACGAGT TCGGCAAGCGGCGCCGAAGCAGCGGCGGTGGCGGGCGCACTGCGCCGGCT CTGGAGGACCCCGCGCTGCTAGGCGCCGCCCCCGCTACGGCCACCAGCAC CACCACCGGCGGCGGCGGCGGTTCAGTCAGCAAGGTCAAAGGGAAGGGGA AGGGGAGGGCGACCAAGGGCAAGAAGGTGGACCCCCTGGTGACCCTTCGA GACGCGAGGGGCATGGCGAGGAAGCCGCTGATCGTGCAATGGCTCAAGTC GGACGGCTGCGAGAGCGACGAGGAGGCAGAGGCCGCGTTGGGCAAGGCCG TCGGGAGCCTCTCGGCGATCTCCCGGTACTGGGAAAGCGGGGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1105:9667..13563+

>mRNA_Ecto-sp8_S_contig1105.1424.1 ID=mRNA_Ecto-sp8_S_contig1105.1424.1|Name=mRNA_Ecto-sp8_S_contig1105.1424.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1605bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1105:9667..13563+ (Ectocarpus species8 EcLAC_412)
ATGTCGGGGAGGACGCTGCGTCCTGCAGTAGCTTCTTCGGCGTGCAGTCT
CGTCATCAAGCACAACGAGAGAGCCACCGACACCGGCCTGTCTTTCGAGA
CCCCGAAAAAATGGGCACCTCTGCAAGCACCTCCGAAAGTTGCTGCTGCT
CCCGTTGCCTTTGCCACGGATGAGTTCTATGACTTTGGTTGGCCGGGGGA
AGATGAGACTAACTTGGCCGAAGAGAAAGAGCTCGATGACCTCCTGCGCC
TAGGACTGGAGCTCGGAGATCTGGAATGCGTGTTCGGCAACACAGATCTG
AACTGCGATACAGCAGATGATGACGCCGAAGAAGGCGATTCCGAAAATGC
GGGTGATGGTGGGAGCGACAAAGGAGGGGGGTGGGGCAAGGAGCCGTACC
TCGCGGGAGACGGGGGGTGGGGTACGGAGCCGAACCTCGAGGGAGGTGCT
ACGGAGGAGCTGCTGCTAGACGCTGATTTGCAAGATGCACTGTTCGATTT
GCCAGACCTCGATTTGGACCACCTCGAAGACAAGGGGGGCCGCGGACAGG
AAAAGCACGGGTGCGGCAGCGACAGCCCGAAGAGCACGCGAGTCGACTGC
GGTGCCGAAGAGGCCGCCACCGAGCCCCCCCCGGACCTCGAGGTCCTCCA
GCAAATGTCCCCCGCGCCCTCCCCGCCCGCAGCAACCGCCGCCGCCGTGA
CAGCCACGGGCTCGGCAGCGTTACCGGTCGCCCCGGCCCCGCCGTCCCCG
GTGGAACTCCCCCGGCGGGAGACGCCCGGCGCGCTTCCCGGAGAAAACCT
TGCCGTTGCTTTCGACGCCGTCGGGGACGAACACCGCCCGATCACCGTGG
TGGACCTCACCGATGCGCCCGCGCCTGCTCACGCTCCGACGGTGGATGCG
GGAGGAGTCGCACCGTCTGGCGTGGAGAGCAATAGCGGCGGAAAACCTGA
CGGCGCCAACGAACACCCCGAAAGCCACCCTTGTAGGGTGACGGCCACCG
GCGACACCACCATTATCGATACTCGAGCTGTTGCCTCTGTTTCGGCGGAC
CCCGTTGCCGGGGTGCCTACGCGCCTTCTCGACGCGGTCGATCTGTGGGA
GAGCGCTGCAAACGCCAAGAAGAAGAAGGCCGCCGCCGCCGCGGCGGCGG
CGGCGGCGGCTCGTGAGCGCGCGAACCGGTCAGCGGCGATGAACAAGCTC
AGCAACACCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAA
GAACGAGTTCGGCAAGCGGCGCCGAAGCAGCGGCGGTGGCGGGCGCACTG
CGCCGGCTCTGGAGGACCCCGCGCTGCTAGGCGCCGCCCCCGCTACGGCC
ACCAGCACCACCACCGGCGGCGGCGGCGGTTCAGTCAGCAAGGTCAAAGG
GAAGGGGAAGGGGAGGGCGACCAAGGGCAAGAAGGTGGACCCCCTGGTGA
CCCTTCGAGACGCGAGGGGCATGGCGAGGAAGCCGCTGATCGTGCAATGG
CTCAAGTCGGACGGCTGCGAGAGCGACGAGGAGGCAGAGGCCGCGTTGGG
CAAGGCCGTCGGGAGCCTCTCGGCGATCTCCCGGTACTGGGAAAGCGGGG
GCTGA
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