mRNA_Ecto-sp8_S_contig11048.1422.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11048.1422.1
Unique NamemRNA_Ecto-sp8_S_contig11048.1422.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI)

HSP 1 Score: 812 bits (2098), Expect = 4.330e-274
Identity = 452/493 (91.68%), Postives = 461/493 (93.51%), Query Frame = 2
Query:    2 KEDASSPSEEVESAVKVNQDRKLTSVPKWQATEKWRNANDDAXXXXXXXXXXKTNKDXDSXXXXXXXXXXXXRNDSSNDDSSSDAACSSRCAYTSKDGTKGRXXXXXXXXXXXXXXXGCGAKQGVYGADCRVCYNNVDKALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEELSVDVDREQAIRFFEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVAIAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVYTSSQGSYHDAQLRSRSASVLGLNAPSFTHGTDLMLPVGANEALRESLGLRHGASLQHGGDGASLIALQELVGFDQVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPAQLEPGSPNTAEVLHSNLDFFSKGGKCANGLIDFIP 1480
            KE+ASSPSEEVESAVKVNQ RKLTSVPKW+A EKWR ANDD XXXXXXXXXX     X S XXXXXXXXXXX NDSS+D SSSDAACSSRC YTSKDGTKGR  XXXXXXX      GCGAKQG+YGADCRVCYNNVD+ALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEELSVDVDREQAIRFFEEAAER YSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPG+RVAIAAEAEG+ AYERSMGGLPGVTISSTQNPATAALFADQYCG GTALILYVEPGSVLSRPFTSKDTHSPR DLLVVYT SQGSYHDAQLRSRSASVLG +APSFTHGTDLMLPVG NEALRESLGLRHGASLQH GDGASLIALQELVGFDQVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAP QLEPGSPNTAEVL SNLDFFSKGGKCANGLIDF+P
Sbjct: 1024 KEEASSPSEEVESAVKVNQYRKLTSVPKWKANEKWRTANDDGXXXXXXXXXXXXXXXXGSEXXXXXXXXXXXXNDSSDDSSSSDAACSSRCTYTSKDGTKGRVCXXXXXXXNVYGTKGCGAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEELSVDVDREQAIRFFEEAAERSYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGIRVAIAAEAEGLDAYERSMGGLPGVTISSTQNPATAALFADQYCGPGTALILYVEPGSVLSRPFTSKDTHSPRSDLLVVYTGSQGSYHDAQLRSRSASVLGFDAPSFTHGTDLMLPVGTNEALRESLGLRHGASLQHDGDGASLIALQELVGFDQVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPVQLEPGSPNTAEVLQSNLDFFSKGGKCANGLIDFMP 1516          
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE)

HSP 1 Score: 763 bits (1970), Expect = 5.170e-264
Identity = 415/493 (84.18%), Postives = 439/493 (89.05%), Query Frame = 2
Query:    2 KEDASSPSEEVESAVKVNQDRKLTSVPKWQATEKWRNANDDAXXXXXXXXXXKTNKDXDSXXXXXXXXXXXXRNDSSNDDSSSDAACSSRCAYTSKDGTKGRXXXXXXXXXXXXXXXGCGAKQGVYGADCRVCYNNVDKALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEELSVDVDREQAIRFFEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVAIAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVYTSSQGSYHDAQLRSRSASVLGLNAPSFTHGTDLMLPVGANEALRESLGLRHGASLQHGGDGASLIALQELVGFDQVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPAQLEPGSPNTAEVLHSNLDFFSKGGKCANGLIDFIP 1480
            KEDASSP+EEVE AVKV+QDRKLTSVP+W+A EKWR ANDD  XXXXXXXXX   K X   XXXXXXXXXXX N SS+D SSSD  CSSRC YTSKDGTKGR               GCGAKQG+YGADCRVCYNNVD+ALKQDSPDNRAIMCST+MPVDVYGRRLSASDE DPLRVAKMIEAE+VG+E SVDVDR +AIRFFEEAAERP+ QDLKRHNLCAFVGGR GEEAMWEVTV SILQFMPGMRVAIAAE+EG+ AYERS+GGLPG  ISSTQN ATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVV+T S GSYHD+QLRSRSASVLG +APSFTHGTDLMLP+G N+ALRESLG R GASLQH GDGASLIAL+ELVGFD+VSA+PQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRY CAIAPAQLEPGSPNTA VL SNLDFFSKGGKCANGLID +P
Sbjct:  335 KEDASSPAEEVELAVKVDQDRKLTSVPRWKAKEKWRTANDDGIXXXXXXXXXXXXKXXGGEXXXXXXXXXXXXNGSSDDSSSSDPGCSSRCTYTSKDGTKGRVCDSNCSTPNVYGTKGCGAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTMMPVDVYGRRLSASDEGDPLRVAKMIEAEEVGDEWSVDVDRVKAIRFFEEAAERPFFQDLKRHNLCAFVGGRVGEEAMWEVTVKSILQFMPGMRVAIAAESEGLDAYERSLGGLPGAAISSTQNSATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVHTGSPGSYHDSQLRSRSASVLGFDAPSFTHGTDLMLPMGTNQALRESLGFRLGASLQHDGDGASLIALEELVGFDRVSALPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYMCAIAPAQLEPGSPNTANVLQSNLDFFSKGGKCANGLIDIMP 827          
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI)

HSP 1 Score: 661 bits (1706), Expect = 2.370e-216
Identity = 377/500 (75.40%), Postives = 410/500 (82.00%), Query Frame = 2
Query:    5 EDASSPSEEVESAVKVNQDRKLT-SVPKWQATEKWRNANDDAXXXXXXXXXXKTNKDXDSXXXXXXXXXXXXRNDSSNDDSSSDAACSSRCAYTSKDGTKGRXXXXXXXXXXXXXXXGCGAKQGVYGADCRVCYNNVDKALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMI-------EAEDVGEELS-VDVDREQAIRFFEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVAIAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVYTSSQGSYHDAQLRSRSASVLGLNAPSFTHGTDLMLPVGANEALRESLGLRHGASLQHGGDGASLIALQELVGFDQVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPAQLEPGSPNTAEVLHSNLDFFSKGGKCANGLIDFI 1477
            EDASSPS E E        R+L+ S PKW++ EKWR + DD+XXXXXXXXXX     X  XXXXXXXXXXXX             ACSS C YTS+DGT+GR               GC AKQG YG +CR C+N+VDKA KQD+P+NR+IMCSTVMPVDVYGRRL+  D S PLRVAK+        EA+DV EEL+ VDVDRE  I FFEEAAERPYSQDLKR NLCAFVGGRAGEEAMW+VTV SILQF+PGMRVAIAAEAEG+ AYERSMGGLPGVT+S TQNPATAALFADQYCG GTALILYVEPGSVLSRPFTSKDTHSPRGDLLVV+T SQGSYHDAQLR RSASVLG +APSFTHGTDLMLPVGANE LRESLGLRHGASLQH GD AS++ALQELV FDQ SAVPQVLAALAYSR+TPGVWF+DPQAWVGQ+LF+EASIW++PLVKPRYTCAIAPAQLEPGSP TAEVL SNLDFFS GGKCANGLIDF+
Sbjct:  976 EDASSPSGEEEH-------RQLSGSTPKWKSQEKWRTSKDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------GACSSTCEYTSRDGTRGRVCDANCSTPDVYGTRGCNAKQGTYGEECRACFNDVDKARKQDTPENRSIMCSTVMPVDVYGRRLTPDDGSRPLRVAKIFSVEDSEEEADDVEEELANVDVDREDVISFFEEAAERPYSQDLKRRNLCAFVGGRAGEEAMWDVTVKSILQFVPGMRVAIAAEAEGLDAYERSMGGLPGVTVSGTQNPATAALFADQYCGPGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVHTGSQGSYHDAQLRRRSASVLGFDAPSFTHGTDLMLPVGANEDLRESLGLRHGASLQHDGDWASMVALQELVEFDQFSAVPQVLAALAYSRDTPGVWFLDPQAWVGQHLFQEASIWNIPLVKPRYTCAIAPAQLEPGSPKTAEVLQSNLDFFSMGGKCANGLIDFV 1459          
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Match: A0A6H5L131_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L131_9PHAE)

HSP 1 Score: 507 bits (1305), Expect = 1.920e-165
Identity = 270/417 (64.75%), Postives = 311/417 (74.58%), Query Frame = 2
Query:  260 CSSRCAYTSKDGTKGRXXXXXXXXXXXXXXXGCGAKQGVYGADCRVCYNNVDKALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEELS-------VDVDREQAIRFFEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVAIAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVYTSSQGSYHDAQLRSRSASVLGLNAPSFTHGTDLMLPVGANEALRESLGLRHGA-SLQHGGDGASLIALQELVGFDQVSAVPQ----VLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPAQLEPGSPNTAEVLHSNLDFFSKGGKCANGLIDF 1474
            C+  C YTS DGT+GR               GCG K G YG +CR CYN+ D+A KQD+P NRAIMCSTVMPVDV    LS  +E   L++ + +E ED  EE+        VD  RE  I FFEEAAERP+ QDLKR NLCAFVGGR  EEAMWEVTV SILQFMPGMRVAIAA A+G+ AYERSMGG PGVTISSTQNPATA+LFAD++CGAGTALILYVEPGSVLSRPFT KDTHSPRGDLLVV+   QGSY + +   RS  VLGL APSFT GTDLMLPVGAN+ LRESLG+   A S++  GDGA++ AL E V F++VS+VPQ    +LAALAY+R TPGVWF DPQ W GQ LF+EASIWD+PL KPR+TCAIA   LEP S + A  L +NLDFFS+GGKC +GLI++
Sbjct:  307 CTDGCKYTSNDGTRGRVCDANCSRRDVHGTLGCGTKDGAYGTECRACYNDGDEAHKQDTPGNRAIMCSTVMPVDVRSLWLSIDNEDYSLQIGQAMEGEDGEEEVEGSFERVGVDGVREGVISFFEEAAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGAKGLDAYERSMGGRPGVTISSTQNPATASLFADRFCGAGTALILYVEPGSVLSRPFTFKDTHSPRGDLLVVHGGGQGSYRNDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMQADSVRRDGDGAAVTALAEPVDFEEVSSVPQARNRMLAALAYARNTPGVWFGDPQVWSGQRLFQEASIWDIPLAKPRFTCAIA-LTLEPDSLHAATTLQNNLDFFSRGGKCEDGLIEY 722          
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE)

HSP 1 Score: 519 bits (1336), Expect = 2.450e-165
Identity = 275/417 (65.95%), Postives = 316/417 (75.78%), Query Frame = 2
Query:  260 CSSRCAYTSKDGTKGRXXXXXXXXXXXXXXXGCGAKQGVYGADCRVCYNNVDKALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEELS---------VDVDREQAIRFFEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVAIAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVYTSSQGSYHDAQLRSRSASVLGLNAPSFTHGTDLMLPVGANEALRESLGLRHGAS-LQHGGDGASLIALQELVGFDQVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPAQLEPGSPNTAEVLHSNLDFFSKGGKCANGLIDFIP 1480
            C   C YTSKDGT+GR               GCGAK G YGADCR CYN+V+KA  QD+P NRAIMCST  PVDVYGRRLSA  E    ++A+ +EAED  +E S         V+V RE+AIRFFE AAERPY  ++ R +LCAFV G  GEEAMWEVTV SILQFMPGM+VAIAAE+EG+ AYERSMG LPGVT+S TQNPATAALFAD+YC   + LILYV PGSVLSR FT KDTHSPRGDLLVV+  SQGSYHD +L  RS+SVLG   PSFT GTDLMLP  AN  +RE+LGL+ G+  LQ   DG ++IALQE V FDQVSAVPQVLAA+AYSR+TPGVWFVDP+ WVGQNLFKEASIWD+PLVKPR+TC IA  +L+  SP TA+VL +++ FF+ GGKCANGLI   P
Sbjct:  702 CLDGCDYTSKDGTRGRVCDSNCSRSDAYGTLGCGAKSGKYGADCRACYNDVEKARTQDTPANRAIMCSTREPVDVYGRRLSAHPEDRFPQLAQQMEAEDSEDENSEGSYEPRVEVEVGREKAIRFFEAAAERPYLGEINRGDLCAFVSGGVGEEAMWEVTVKSILQFMPGMKVAIAAESEGLDAYERSMGRLPGVTVSGTQNPATAALFADKYCSF-SELILYVRPGSVLSRSFTPKDTHSPRGDLLVVHAGSQGSYHDTELSHRSSSVLGFETPSFTQGTDLMLPGDANYYVREALGLKIGSEGLQEDRDGDAVIALQEFVYFDQVSAVPQVLAAVAYSRKTPGVWFVDPRGWVGQNLFKEASIWDIPLVKPRFTCTIASDKLDSSSPKTAQVLQNSVVFFANGGKCANGLIADAP 1117          
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Match: D7FI38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI38_ECTSI)

HSP 1 Score: 502 bits (1292), Expect = 2.590e-164
Identity = 270/418 (64.59%), Postives = 309/418 (73.92%), Query Frame = 2
Query:  260 CSSRCAYTSKDGTKGRXXXXXXXXXXXXXXXGCGAKQGVYGADCRVCYNNVDKALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEELS-----VDVD--REQAIRFFEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVAIAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVYTSSQGSYHDAQLRSRSASVLGLNAPSFTHGTDLMLPVGANEALRESLGLR-HGASLQHGGDGASLIALQELVGFDQVSAVPQ----VLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPAQLEPGSPNTAEVLHSNLDFFSKGGKCANGLIDFI 1477
            C   C YTSKDGT+GR               GCG K G YG +CR CYN+  KA KQD+P+NR IMCST MPVDV    LS   E   L++A  +EAED  EE       VDVD  RE  I FFEE AERP+ QDLKR NLCAFV GR  EEAMWEVTV SILQFMPGMRVAIAA A+G+ AYERSMGGLPGVTISST NPATA+LFAD++CGAGTALILYVE GSVLSRPFTSKDTHSPRGDLLVV+   QGSY D +   RS  VLGL APSFT GTDL+LPVGAN+ LR SLG+  H  S++  G GA+++AL E   F++VSAVPQ    +LAALAY+R TPGVWF DP+ WVGQ+LF+EASIWD+PLVKPR+TCAIA A LEP     A  L +NLDFFS+GGKC +GLI+++
Sbjct:  249 CLDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGTKDGAYGTECRACYNDGGKAHKQDTPENRVIMCSTAMPVDVRDLWLSTDSEDHSLQIAHAMEAEDREEEAEGSFERVDVDGIREGVISFFEEEAERPFFQDLKRGNLCAFVSGRVDEEAMWEVTVKSILQFMPGMRVAIAAGAKGLDAYERSMGGLPGVTISSTHNPATASLFADRFCGAGTALILYVELGSVLSRPFTSKDTHSPRGDLLVVHRGGQGSYRDDERSRRSGLVLGLEAPSFTRGTDLVLPVGANKDLRGSLGMEMHADSVRRDGVGAAVMALTEPADFEEVSAVPQARNRMLAALAYARNTPGVWFGDPKVWVGQHLFQEASIWDIPLVKPRFTCAIALA-LEPDILRAATTLQNNLDFFSRGGKCEDGLIEYL 665          
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI)

HSP 1 Score: 530 bits (1365), Expect = 8.810e-164
Identity = 302/496 (60.89%), Postives = 354/496 (71.37%), Query Frame = 2
Query:   29 EVESAVKVNQDRKLTS-VPKWQATEKWRNANDDAXXXXXXXXXXKTNKDXDSXXXXXXXXXXXXRNDSSNDDSSSDAACSSRCAYTSKDGTKGRXXXXXXXXXXXXXXXGCGAKQGVYGADCRVCYNNVDKALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEELS-------VDVD---REQAIRFFEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVAIAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVYTSSQGSYHDAQLRSRSASVLGLNAPSFTHGTDLMLPVGANEALRESLGLRHGAS-LQHGGDGASLIALQELVGFDQVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPAQLEPGSPNTAEVLHSNLDFFSKGGKCANGLIDFIP 1480
            ++E+  K  + R+L+  VPKW+A EKW+N     XXXXXXXX                            +DSS +  C   C YTSKDGT+GR               GCGAK G YGADCR CYN+ +KA KQD+P NRAIMCST  PVDVYGRRLS   +   L +A++ EAE+  +E S       VDV+   RE+A+RFFE AAER Y  +++R NLCAFV G AGEEAMWEVTV SILQFMPGM+VA+AAEAEG+ AYERSMG LPGVT+S TQNPATA L+AD+YC   + LILYV+PGSVLSR FTSKDTHSPRGDLLVV+  SQGSYHD +L  RSASVLG  APSFT GTDLMLP  AN  LRE+LGL+ G+  LQ  GDG ++IALQ+ V FDQVSAVPQVLAA+AYSRETPGVWF+DP+ WVGQNLFKEASIWD+PLVKPR+TC IA  +L+  SP TAE L S++DFF+ GGKCANGLI   P
Sbjct: 1339 DLEALQKDEEHRQLSEDVPKWRAQEKWKNNTXXXXXXXXXXXKQY-------------------------EDSSDEEGCMDGCEYTSKDGTRGRVCDSNCSSPNVYGTLGCGAKNGKYGADCRACYNDDEKARKQDTPGNRAIMCSTREPVDVYGRRLSGHQDFS-LELARLTEAENSEDEDSEDGFEPRVDVEVGGREKAVRFFEAAAERTYLGEVERGNLCAFVSGWAGEEAMWEVTVKSILQFMPGMKVAVAAEAEGLDAYERSMGRLPGVTVSGTQNPATATLYADKYCSF-SELILYVKPGSVLSRSFTSKDTHSPRGDLLVVHAGSQGSYHDTELSRRSASVLGFEAPSFTQGTDLMLPGDANYYLREALGLKIGSDGLQGDGDGDAVIALQKFVDFDQVSAVPQVLAAVAYSRETPGVWFIDPRGWVGQNLFKEASIWDIPLVKPRFTCTIAADKLDSASPKTAETLQSSVDFFANGGKCANGLIAAAP 1807          
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Match: A0A6H5JHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL7_9PHAE)

HSP 1 Score: 430 bits (1105), Expect = 8.610e-135
Identity = 223/292 (76.37%), Postives = 241/292 (82.53%), Query Frame = 2
Query:  353 GCGAKQGVYGADCRVCYNNVDKALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEEL--------SVDVDREQAIRFFEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVAIAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVYTSSQGSYHDAQLRSRSASVLGLNAPSFTHGTDLMLPVGANEALRESLGLRHGASLQHGGDGASLIALQELVGFD 1204
            GC AKQG YG + R C+N+VDKA KQD+P+NRAIMCSTVMPVDVYGRRL+  D S PLR AK+   ED  EE         +VDVDRE  I FFEEAA+RPYSQDLKR NLCAFV GR GEE MWEVTV  ILQFMPGMRVAIAAEAEG+  YERSMGG PGVT+S TQN ATA+LFADQYCGAG ALILYV+PGS LSR FTSKDTHSPRGDLLVV+T  QGSYHDAQLR RS SVLG +APSFT GTDLMLPVGANE LRESLGLRHGASLQH GDGAS++ALQE+V FD
Sbjct:  510 GCNAKQGTYGEERRACFNDVDKARKQDTPENRAIMCSTVMPVDVYGRRLTPDDGSRPLREAKIFSVEDSEEEADGVEGELANVDVDREDVISFFEEAAKRPYSQDLKRRNLCAFVSGRVGEETMWEVTVKIILQFMPGMRVAIAAEAEGLDTYERSMGGRPGVTVSGTQNLATASLFADQYCGAGAALILYVKPGSDLSRFFTSKDTHSPRGDLLVVHTGFQGSYHDAQLRRRSVSVLGFDAPSFTDGTDLMLPVGANEDLRESLGLRHGASLQHDGDGASMVALQEMVEFD 801          
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Match: A0A6H5JGJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ2_9PHAE)

HSP 1 Score: 342 bits (876), Expect = 2.800e-101
Identity = 228/505 (45.15%), Postives = 280/505 (55.45%), Query Frame = 2
Query:  218 RNDSSNDDSSSDAACSSRCAYTSKDGTKGRXXXXXXXXXXXXXXXGCGAKQGVYGADCRVCYNNVDKALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMI---------------------------------------------EAEDVGEELSVDVDREQAIRF------------FEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVAIAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGA--GTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVYTSSQ-GSYHDAQLRSRSASVLGLNA------------PSFTHGTDLMLPVGANEALRESLGLRHGASLQHGGDGASLI-ALQELVGFDQVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPAQLEP-----------GSPNTAEVLHSNLDFFSKGGKCANGLIDFIP 1480
            R  SS  D+ SD  C+  C YTS DGT G XXXXXXXXXXX    GC    G YG +CR C+N+VD AL+ D+ DNR+IMC T++PVDV  RRL                                                            EA  +    S       A  F            F +AA+ P+++D+   +LCAF+ GRAGE   W VTV+SI +F PGMRVA+AAE E V  YER++G LPGVT++ST +  TA+L+AD+YCG    T+LI+YV  GS  SRP TSKDTHSPRGDLLV ++SS   S+H A L  ++ASVL L+             PSFT GTDLMLP GAN  LR+    +        GD A+   A+Q L   D ++AVPQ LAAL YSR+  GVWF+DPQAWV + LFKE SIWD+PLVKPR+TCA+ PA L              S   A+VL   LDFFSKGG C+NG IDF P
Sbjct:  307 RTTSSAGDAPSD--CNDSCEYTSNDGTTGXXXXXXXXXXXXYGFFGCDTNDGQYGGNCRYCFNDVDSALEFDAQDNRSIMCDTLLPVDVNSRRLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEAMAITPRASAGALPSSARHFAPTGATDKQALAFAQAAKSPFTEDVAYGSLCAFIAGRAGEVDEWAVTVSSIQKFAPGMRVAVAAEEEAVHLYERAVGPLPGVTVASTPSALTASLYADRYCGGTNSTSLIMYVTRGSTFSRPLTSKDTHSPRGDLLVAHSSSATASHHVAHLAKQTASVLALSEGGAAPPPPLPLPPSFTFGTDLMLPAGANADLRDLFASK--------GDKATFQQAVQTLADLDDLAAVPQALAALQYSRQPEGVWFLDPQAWVSEYLFKEVSIWDIPLVKPRFTCAVDPALLRNHASAGAARGGRSSFEVAQVLQDGLDFFSKGGTCSNGQIDFRP 801          
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Match: D7FR80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR80_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 1.440e-100
Identity = 219/504 (43.45%), Postives = 273/504 (54.17%), Query Frame = 2
Query:  260 CSSRCAYTSKDGTKGRXXXXXXXXXXXXXXXGCGAKQGVYGADCRVCYNNVDKALKQDSPDNRAIMCSTVMPVDVYGRRL------------------------------------------------------------------------SASDESDPLRVAKMIEAEDVGEELSVDVDREQAIRFFEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVAIAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGA--GTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVYTSS-QGSYHDAQLRSRSASVLGLNA-----------PSFTHGTDLMLPVGANEALRESLGLRHGASLQHGGDGASLIALQELVGFDQVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPAQLEP-----------GSPNTAEVLHSNLDFFSKGGKCANGLIDFIP 1480
            C   C YTS DGT GRXXXXXXX        GC  + G YG +CR C+N+VD ALK D+ DNRAIMC T++PVDV  RRL                                                                        S    +   R +                  +QA+ F + AA+ P+++D+   +LCAF+ GRAGE   W VTV+SI +F PGMRVA+AAE + V  YE ++G LPGVT++ST +  TA+L+AD+YCG    T+LI+YV  GS  SRP TSKDTHSPRGDLLV ++SS + S+H AQL  ++ASVL L+            PSFT GTDLMLPVGAN  LR+    +       G   A   A+Q L G D ++AVPQ LAAL YSR+  GVWF+DPQAW+ + LFKE SIWD+PLVKPR+TCA+ PA L              S   A+VL   LDFFSKGG C+NG IDF P
Sbjct:  517 CDDSCEYTSNDGTTGRXXXXXXXDGNPYGFLGCDTEDGQYGGNCRYCFNDVDSALKFDAQDNRAIMCDTLLPVDVNSRRLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEAMASAPRASTGALPSSARHSAPSGATDKQALAFAQ-AAKSPFTEDVAYGSLCAFIAGRAGEVDEWAVTVSSIQKFAPGMRVAVAAEEDAVHLYEWAVGSLPGVTVASTPSALTASLYADRYCGGTKATSLIMYVTRGSTFSRPLTSKDTHSPRGDLLVAHSSSARASHHVAQLAKQTASVLALSEGSAAPPTVPLPPSFTFGTDLMLPVGANADLRDLFASK-------GDKAAFQQAVQTLAGLDDLAAVPQALAALQYSRQPEGVWFLDPQAWISEYLFKEVSIWDIPLVKPRFTCAVDPALLRNHDSAGPTRGGRSSFEVAQVLQDGLDFFSKGGTCSNGQIDFRP 1012          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11048.1422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI39_ECTSI4.330e-27491.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4M7_9PHAE5.170e-26484.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI63_ECTSI2.370e-21675.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L131_9PHAE1.920e-16564.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LJP6_9PHAE2.450e-16565.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI38_ECTSI2.590e-16464.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI37_ECTSI8.810e-16460.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHL7_9PHAE8.610e-13576.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGJ2_9PHAE2.800e-10145.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR80_ECTSI1.440e-10043.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11048contigEcto-sp8_S_contig11048:2733..6612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score654.1
Seed ortholog evalue3.7e-185
Seed eggNOG ortholog2880.D7FI39
Model size2540
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2D0G2@1,2SE3H@2759
Cds size1029
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11048.1422.1prot_Ecto-sp8_S_contig11048.1422.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11048 3790..5612 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143190.1880584-UTR-Ecto-sp8_S_contig11048:2732..37891681143190.1880584-UTR-Ecto-sp8_S_contig11048:2732..3789Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11048 2733..3789 -
1681143190.2503874-UTR-Ecto-sp8_S_contig11048:5612..58081681143190.2503874-UTR-Ecto-sp8_S_contig11048:5612..5808Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11048 5613..5808 -
1681143190.270228-UTR-Ecto-sp8_S_contig11048:6130..62531681143190.270228-UTR-Ecto-sp8_S_contig11048:6130..6253Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11048 6131..6253 -
1681143190.281899-UTR-Ecto-sp8_S_contig11048:6477..66121681143190.281899-UTR-Ecto-sp8_S_contig11048:6477..6612Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11048 6478..6612 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143190.1975288-CDS-Ecto-sp8_S_contig11048:3789..40471681143190.1975288-CDS-Ecto-sp8_S_contig11048:3789..4047Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11048 3790..4047 -
1681143190.2065797-CDS-Ecto-sp8_S_contig11048:4304..47371681143190.2065797-CDS-Ecto-sp8_S_contig11048:4304..4737Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11048 4305..4737 -
1681143190.2197165-CDS-Ecto-sp8_S_contig11048:4943..52791681143190.2197165-CDS-Ecto-sp8_S_contig11048:4943..5279Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11048 4944..5279 -
1681143190.238701-CDS-Ecto-sp8_S_contig11048:5610..56121681143190.238701-CDS-Ecto-sp8_S_contig11048:5610..5612Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11048 5611..5612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11048.1422.1

>prot_Ecto-sp8_S_contig11048.1422.1 ID=prot_Ecto-sp8_S_contig11048.1422.1|Name=mRNA_Ecto-sp8_S_contig11048.1422.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=343bp
MCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEELSVDVDREQAIR
FFEEAAERPYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGMRVA
IAAEAEGVAAYERSMGGLPGVTISSTQNPATAALFADQYCGAGTALILYV
EPGSVLSRPFTSKDTHSPRGDLLVVYTSSQGSYHDAQLRSRSASVLGLNA
PSFTHGTDLMLPVGANEALRESLGLRHGASLQHGGDGASLIALQELVGFD
QVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRY
TCAIAPAQLEPGSPNTAEVLHSNLDFFSKGGKCANGLIDFIP*
back to top

mRNA from alignment at Ecto-sp8_S_contig11048:2733..6612-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11048.1422.1 ID=mRNA_Ecto-sp8_S_contig11048.1422.1|Name=mRNA_Ecto-sp8_S_contig11048.1422.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3880bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11048:2733..6612- (Ectocarpus species8 EcLAC_412)
GAAGGAGGACGCATCGTCGCCGTCGGAGGAGGTGGAGTCGGCGGTGAAGG TCAACCAGGACCGGAAGCTGACGAGTGTGCCGAAGTGGCAGGCGACGGAA AAGTGGAGGAACGCGAACGATGACGCCATCCCCAAGTAAGTATTTTGCGG TGGCATTTGGTTGTGTTTCTGAAGTCGTAGAAATGGTTTTGCCATGACAG TTGCTTCAGTTGGGTTCCTCGAGCGTGGGTTTGGAGCATCCGGCACCTGT TCGGCGTAGGCGTATCTCTGCCCGACGGTATCCTGGGGTGACGTAGCTGA CCGTTCCCTTTTGGTTTGCGCCGTCGCAACCCACGCAATACCTTCGCATC ACACGCTAGGTGGCAGCGCAACCAGAAGTGGAAGACGAACAAGGACGACG ACAGCGAGCCCAAGTGGCGGACCAACCAGAAGTGGAAGAACAGGAACGAC TCTTCCAACGACGACTCGTCTTCGGACGCAGCGTGAGTTTGAAGTACACT TGAAAAAATGGTTCAAATATTGCACCAAACACGACTGGTTTGAAAATTGG TAACGCTGTTCGTGCCCAACTGCAAGGGCCTGGAAGCAGCTTGGGCAATG TCGAAATCGTTGGTAGTGTACGTCTGGAACAATCTCTTTTGGGAAAGTTG ACCAATCCGAGCTTCAACGGGCCTTGTCCGTTTGTTCATATTCTCAAGTG CACCCATCTAAGAGAACTTGATGTCTTGAGGGCCTTTCACAGTCGAATGT TGTAGTACTCACCAGCTCTCGGTGTCTCCGTTGTTCGATTATATCTGGAT GCAGGTGCTCGTCCCGCTGCGCGTACACGAGCAAGGATGGCACCAAGGGG CGCGTGTGCGACTCGAACTGCTCCAGCCCGAACGTGTACGGCACCAAGGG ATGCGGCGCCAAGCAGGGGGTCTACGGCGCCGACTGCCGTGTCTGCTACA ACAACGTAGACAAGGCCCTCAAGCAAGACTCTCCGGACAACCGTGCTATC ATGTAAGAGATCAAGCGGCGCGTGGTCACCATCATGCTTTTATTTCTGTC TTATGTCTTTTTTGTCATTACGCCAATCGATGGGATGATGGAATTTTTTT GCCGGCTGTCAAAGGGACACAGCAACAAAAAACGGTCTATACTGTACCTA CACCGTAGGTAGCCTTGCCCGAGGGACATGCCGGTGCTGTTTTTTTCCCG TACAATTTATGTTGTGTGCTTGCCCGTTTCGTCTTGATTGACAAGTGCTC TACTTTGTCTCCAGTCCTCTTGAACCCTTGTCGTCACATCCCATTTCACG CACCTACTTGACTCGCCCGATTGACCTCGACAGGTGCTCGACCGTGATGC CAGTGGACGTCTACGGCCGCCGCTTGTCTGCCAGCGACGAGAGCGACCCT CTTCGCGTCGCCAAGATGATCGAAGCGGAGGATGTCGGAGAGGAGTTGAG CGTCGACGTCGACAGGGAGCAGGCGATCCGCTTCTTCGAGGAGGCGGCTG AACGACCGTACTCCCAGGACCTGAAGCGCCACAACCTGTGCGCCTTCGTC GGTGGTCGGGCGGGCGAGGAGGCCATGTGGGAGGTGACGGTGAACAGCAT CCTGCAGTTCATGCCGGGCATGAGGGTGGCCATCGCGGCTGAGGCAGAGG GTGTTGCCGCGTACGAGAGGTGCGTGGGTGTGCGTTGGTAAACGGCCCTT AGGACGTGTTTTCTTTTGCTCTTTTGTATTCTCCGTGCCTGCATGTGGCC ATGTACGTTGACGCTTCGCGAGACTGGATCGTCAAACAGCGCCCGAGAAA CTTGCCGCCTCCCCTGCTCTTAAAACAAGTCTCTGACGTTGTCCCTGCTG TTCCTTCCGATGCCGACAATTCTAGGTCCATGGGCGGTCTCCCCGGTGTC ACCATTTCCAGCACCCAGAACCCCGCCACGGCGGCCCTGTTCGCAGACCA GTACTGCGGGGCTGGCACCGCTCTCATCTTGTACGTCGAGCCGGGGTCCG TTCTCTCCCGGCCCTTCACCTCCAAGGACACCCACTCCCCGCGGGGCGAC CTCCTGGTCGTTTACACGAGCTCTCAGGGGAGCTACCACGACGCCCAGCT GAGGAGCCGCTCGGCCTCGGTGCTCGGCTTGAATGCACCGTCCTTCACGC ATGGCACCGACCTAATGCTCCCGGTGGGCGCTAACGAAGCCCTCCGGGAG TCGCTCGGGCTAAGGCATGGTGCCAGCCTGCAGCACGGCGGCGACGGGGC CTCGTTGATCGCCCTTCAGGAGTTGGTGGGCTTCGACCAAGTCTCCGCTG TCCCCCAGGTGTTATGTCTTTCGTGTGTGTGCAAACGCAAGGATGTTGAG TGTAGCGTTGGTGTTTTGGAGGCTATTTATAGCTCTTGGCGTGTGGCGTT TACGATAACAAAATTGAGTTCGGTTGTCTGGTTGTGTACATTCGCGTTCG GGTCCTGGTGTCGGTTTATAGTATATTGTCCACATACACGAGGAACAGGG TGCACGCTCTTTGCAATCGCTGACCGTGCAGCCCTCTGTCGTCTACACTT GTACCCACGATGCAGGTGCTTGCCGCGCTCGCCTACTCCCGCGAAACGCC TGGAGTGTGGTTTGTCGACCCCCAGGCTTGGGTCGGTCAAAACCTGTTCA AGGAGGCGTCCATCTGGGACGTCCCTCTGGTCAAGCCCCGCTACACATGC GCCATCGCTCCCGCCCAGCTGGAGCCTGGCAGCCCCAACACTGCCGAGGT TTTGCATAGCAACCTCGACTTCTTCTCAAAGGGAGGCAAATGCGCCAACG GCCTAATTGATTTTATTCCTTAGCTTTCATCAACATTTTCGCCTCTTAGT TCAGTTCTCTTCGTGTGATACGTTTGTTGTTGTTTTACCGCGGGCTGGCG CACCGTGGCTTGCCCGAGTTTGTTGTTGTTGTTGGAGCCAAAAGCTGCTA ACGTCACTATAGTGTAGCGTTGTACTAATTCCGATTTTGAATGACAGATG CTAAGTTGACCCATGTGTGTCGGTGGCAGGAACGGTCTTGCTGTATTATA TGGAGCAACATTTTAGCTTTCGGGGCGCGTGGACGTTGGAGGTATCTGTT GCTCGAGTAGGAACCCTCCGTCGTTTCCGCCAGCACGAACGCTACTTCGT GTTGGCCGTTCATTTTTTCACCGGTGTGCGGCAGGATGGTATCTGCCCTT CCGGCACCTAACACTGGCGTTGGAAGCCATGGCCGAAGAGACGAACGATC CGTCACGGAAGGTCGCCACAGAAAGCAGGTTGTACATAAATACCGCTGTT TTCGAAGCTCTTGTTGCTGTCATTTGTGCAACACGGTTGTGCCGATCCGT CTTTGGGTGGGTCTGCTCGAGGGTGGCTGTTCCCGTTTTTGTGTTTCTGT GCTGATGATATCGTAAGGTTGTACGGTGCTACCCAACTTGGTGTTAGTGT TTGGACCATGGTGACGTGTATGCACCGTATGTCGCGCATGCTGTTTGCCT TAGGCAGGAGAGGCCTTTAAAGGTTGAACCGAAAAAGTTCACTGGGCTAA AGTCTTCGTATTGTGGCGCGTTTCGTTTGTTGCCGTCTCTCCCGACGAGG TCTCTGTTGTTATCTTAATCATGTTGAATCTGGTGTTATACCGGGCATCC TTCTTGTGCCACTAATCGTGTACCAACAGTTGTCTTTAATGTAACGTTGG GGGTAACGACCGCCTGTTCGCGAAGTGCTGCTGAGTTGATTACAGTGTTT TTACCGTCCTGCCGCGTCATTTTGAGCCGGTGACACGTAATACGCTGGGG ACAGCCGCCGCCGGCGTGCGATTAGAGGACAGGTCTGGTACGACCTTGTT GAAAGGACACAATGCGGTCGATCACATTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11048:2733..6612-

>mRNA_Ecto-sp8_S_contig11048.1422.1 ID=mRNA_Ecto-sp8_S_contig11048.1422.1|Name=mRNA_Ecto-sp8_S_contig11048.1422.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1029bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11048:2733..6612- (Ectocarpus species8 EcLAC_412)
ATGTGCTCGACCGTGATGCCAGTGGACGTCTACGGCCGCCGCTTGTCTGC
CAGCGACGAGAGCGACCCTCTTCGCGTCGCCAAGATGATCGAAGCGGAGG
ATGTCGGAGAGGAGTTGAGCGTCGACGTCGACAGGGAGCAGGCGATCCGC
TTCTTCGAGGAGGCGGCTGAACGACCGTACTCCCAGGACCTGAAGCGCCA
CAACCTGTGCGCCTTCGTCGGTGGTCGGGCGGGCGAGGAGGCCATGTGGG
AGGTGACGGTGAACAGCATCCTGCAGTTCATGCCGGGCATGAGGGTGGCC
ATCGCGGCTGAGGCAGAGGGTGTTGCCGCGTACGAGAGGTCCATGGGCGG
TCTCCCCGGTGTCACCATTTCCAGCACCCAGAACCCCGCCACGGCGGCCC
TGTTCGCAGACCAGTACTGCGGGGCTGGCACCGCTCTCATCTTGTACGTC
GAGCCGGGGTCCGTTCTCTCCCGGCCCTTCACCTCCAAGGACACCCACTC
CCCGCGGGGCGACCTCCTGGTCGTTTACACGAGCTCTCAGGGGAGCTACC
ACGACGCCCAGCTGAGGAGCCGCTCGGCCTCGGTGCTCGGCTTGAATGCA
CCGTCCTTCACGCATGGCACCGACCTAATGCTCCCGGTGGGCGCTAACGA
AGCCCTCCGGGAGTCGCTCGGGCTAAGGCATGGTGCCAGCCTGCAGCACG
GCGGCGACGGGGCCTCGTTGATCGCCCTTCAGGAGTTGGTGGGCTTCGAC
CAAGTCTCCGCTGTCCCCCAGGTGCTTGCCGCGCTCGCCTACTCCCGCGA
AACGCCTGGAGTGTGGTTTGTCGACCCCCAGGCTTGGGTCGGTCAAAACC
TGTTCAAGGAGGCGTCCATCTGGGACGTCCCTCTGGTCAAGCCCCGCTAC
ACATGCGCCATCGCTCCCGCCCAGCTGGAGCCTGGCAGCCCCAACACTGC
CGAGGTTTTGCATAGCAACCTCGACTTCTTCTCAAAGGGAGGCAAATGCG
CCAACGGCCTAATTGATTTTATTCCTTAG
back to top