mRNA_Ecto-sp8_S_contig11042.1417.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11042.1417.1
Unique NamemRNA_Ecto-sp8_S_contig11042.1417.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11042.1417.1 vs. uniprot
Match: A0A6H5JYW2_9PHAE (SH2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYW2_9PHAE)

HSP 1 Score: 904 bits (2336), Expect = 0.000e+0
Identity = 462/504 (91.67%), Postives = 480/504 (95.24%), Query Frame = 1 
Query:    1 QGRPVKLHLWDVAGSQLTAQPCHHGLIGQGAEGVLYVVDVTSRESLQAVDDWDQALSKFYPPWTCKLLVGHKADLPAYVVNDEALSLYVASASGFKGWCLTVGSSEYGDYDVAARRGGGSGATAHGARHKGQSLSGEKQLSVSEAVRTLLGHVFRSGGAARGASRPAGVLGLGASAGRATPLPSDHLQDALETMELLGLGGKGTPPVQDENIKDGDTEENSRGWECADWPEKERSEDGSKGRPVEMHSEGLGPLLERGRGPDPSWRQGIPGNGLAVATVGDDDANGGDPGWRHFAGRMGREKAEALLSGRPDGTFFLRRKGPSLLVLTYVASAKRPNSNATTPTSGARNRKSYPSSRSPRMRDMLGSPQGEKLGKGGLSLEGVRDGLAGSTLVQHALLVHEGGFFSDEKGRLGRFSTLEELLNSKISAIARHPLSFRRERDGYVLIDEDDPAALSHEPAPSTASADLSPSTNPFARADKAASAHDRIIRGNPASSLAPTANGNL 1512
            QGRPVKLHLWDVAGSQLTAQPCHHGLIGQGAEGVLYV+DVTSRESLQAVDDWDQALSKFYPPWTCKLLVGHKADLPAYVVNDEALSLYVA ASGFKGWCLTVGSSEYGDYDVAARRGGGSGATAHGARHKGQSLSGEKQLSVSEAVRTLLGHVFRSGGAARGASRPAGVLGLGASAGRATPLPSDHLQDALETMELLGLGGKG PPVQDEN KDGDTEENSRG ECADWP +ER  DGSKGRPVEM SEGLGPLLERGRGPDPSWRQG+P + LAVATVGD DA+G DPGWRHFAGRMGRE+AEALL GRPDGTFFLRRKGPSLLVLTYVASAKRPN NA TPTSGARN KSYP++RSPRMR+M+GSPQGEKLGKG LSLEGVRD LAGSTLVQHALL+HEGGFFSDEKGRLGRFSTLEELL SKISAIARHPLSFRRER+GYVLID+DDP ALSH+PA ST S +LSPSTN FARADKAASAHD+IIRGNPASS+AP+ANGNL
Sbjct:   57 QGRPVKLHLWDVAGSQLTAQPCHHGLIGQGAEGVLYVMDVTSRESLQAVDDWDQALSKFYPPWTCKLLVGHKADLPAYVVNDEALSLYVAGASGFKGWCLTVGSSEYGDYDVAARRGGGSGATAHGARHKGQSLSGEKQLSVSEAVRTLLGHVFRSGGAARGASRPAGVLGLGASAGRATPLPSDHLQDALETMELLGLGGKGAPPVQDENSKDGDTEENSRGRECADWPREERFGDGSKGRPVEMRSEGLGPLLERGRGPDPSWRQGVPRDSLAVATVGDGDASGRDPGWRHFAGRMGREEAEALLRGRPDGTFFLRRKGPSLLVLTYVASAKRPNCNANTPTSGARNLKSYPANRSPRMREMVGSPQGEKLGKG-LSLEGVRDSLAGSTLVQHALLMHEGGFFSDEKGRLGRFSTLEELLKSKISAIARHPLSFRRERNGYVLIDQDDPTALSHQPASSTTSTNLSPSTNSFARADKAASAHDQIIRGNPASSVAPSANGNL 559
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11042.1417.1 vs. uniprot
Match: K3WC21_GLOUD (SH2 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC21_GLOUD)

HSP 1 Score: 92.8 bits (229), Expect = 4.480e-16
Identity = 93/354 (26.27%), Postives = 153/354 (43.22%), Query Frame = 1 
Query:   13 VKLHLWDVAGSQLTAQPCH-HGLIGQGAEGVLYVVDVTSRESLQAVDDWDQALSKFYPPWTCKL-LVGHKADL-PAYVVNDEALSLYVASASGFKGWCLTVGSSEYGDYDVAARRGGGSGATAHGARHKGQSLSGEKQLSVSEAVRTLLGHVFRSGGAA--RGASRPAGVLGLGASAGRATPLPSDHLQDALE--TMELLGLGGKGTPPV-QDENIKDGDTEENSRGWECADWPEKERSEDGSKG-RPVEMHSEGLGPLLERGRGPDPSWRQGIPGNGLAV-------ATVGDDDAN----------GGDPGWRHFAGRMGREKAEALLSGRPDGTFFLRRKGPSLLVLTYVAS 996
            V LH+WDV+ +++ A     H L+ +  +G+ +V +V    S+ AVD W  +L+K+         L+ HKADL    V+  + ++ Y  +A G+KGW  TVG S +G+ D                          K  +V EA+  ++  + ++   A    A++     G+ +SA  + PL      DAL   +  LL +  K    + +D+N+     E+          P+K   E   K  +  + H  G    +        +W   I GN   V       + V +D+              +  W+ FAG + R + EA+LSG+ +GTF LRRK    L+L+YV S
Sbjct:  159 VLLHIWDVSSAEIDASASALHALLCEDLDGIFFVFNVHRVSSIAAVDKWRHSLAKYVSAKEIPFFLLSHKADLLQKRVMTSDDIASYARNA-GYKGWMWTVGKSNFGEND--------------------------KHPAVMEALERMIEFIIKARDLADQARATKDTNPQGIFSSAHTSVPLEVVQTDDALHQFSASLLRIPTKAITTIPRDDNVAASSVEK----------PDKASVEKEVKPPQSQQKHRSGKSAAMTATTDYGGNW---ILGNNKGVYLRATNDSFVANDETEDEERAARDRVNDELAWQFFAGSIDRTRTEAILSGKDEGTFLLRRKDAQTLILSYVGS 472
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11042.1417.1 vs. uniprot
Match: A0A835YQQ8_9STRA (SH2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQQ8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.920e-11
Identity = 50/151 (33.11%), Postives = 67/151 (44.37%), Query Frame = 1 
Query:  862 DPGWRHFAGRMGREKAEALLSGRPDGTFFLRRKGPSLLVLTYVASAKRPNSNATTPTSGARNRKSYPSSRSPRMRDMLGSPQGEKLGKGGLSLEGVRDGLAGSTLVQHALLVHEGGFFSDEKGRLGRFSTLEELLNSKISAIARHPLSFRR 1314
            D GW  FAG + RE A+A+L+  P GT+ LRR+ P  LVL   +                                      G+   KG                 QH L+ +E G ++D++GRLGRF TLEELL SK++ +A  PL FRR
Sbjct:  330 DAGWGCFAGSIDRETADAMLAAEPVGTYLLRRRTPRQLVLCIAS--------------------------------------GDAAAKG----------------AQHVLINYEQGHYTDQQGRLGRFPTLEELLQSKVAQLATRPLRFRR 426
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11042.1417.1 vs. uniprot
Match: A0A6U3NLC3_9STRA (Hypothetical protein n=4 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U3NLC3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.350e-7
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    7 RPVKLHLWDVAGSQL--TAQPCHHGLIGQGAEGVLYVVDVTSRESLQAVDDWDQALSKFYPPWTCKLLVGHKADLPA-YVVNDE 249
            + VKL +WD AG +   T    ++    +GA+G++ V DVTS++S   V+DW + ++++    TCKLLVG+K+D  A  VV +E
Sbjct:   65 KTVKLQIWDTAGQERFRTITSAYY----RGADGIIMVYDVTSKDSFDHVNDWMKEVNRYASEGTCKLLVGNKSDRTADRVVTEE 144
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11042.1417.1 vs. uniprot
Match: A0A7S2N4U8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4U8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.260e-7
Identity = 32/84 (38.10%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    7 RPVKLHLWDVAGSQL--TAQPCHHGLIGQGAEGVLYVVDVTSRESLQAVDDWDQALSKFYPPWTCKLLVGHKADLPA-YVVNDE 249
            + VKL +WD AG +   T    ++    +GA+G++ V DVTS++S   V+DW + ++++    TCKLLVG+K+D  A  +V +E
Sbjct:   64 KTVKLQIWDTAGQERFRTITSAYY----RGADGIIMVYDVTSKDSFDHVNDWMKEVNRYASEGTCKLLVGNKSDRTADKIVKEE 143
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11042.1417.1 vs. uniprot
Match: A0A6T5NNE9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NNE9_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 8.060e-6
Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:   13 VKLHLWDVAGSQL--TAQPCHHGLIGQGAEGVLYVVDVTSRESLQAVDDWDQALSKFYPPWTCKLLVGHKADLPAY-VVNDEALSLYVASAS 279
            +KL +WD AG +   T    ++    +GA+G++ V DVT+  S   V+DW   ++++   ++CKLLVG+KAD  A   V+ E    +  S S
Sbjct:   58 IKLQIWDTAGQERFRTITSAYY----RGADGIIMVYDVTNEPSFDNVNDWLSEVNRYSSQYSCKLLVGNKADREAERAVSKETAEEFANSLS 145
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11042.1417.1 vs. uniprot
Match: A0A8H3TZN1_9TREE (Uncharacterized protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3TZN1_9TREE)

HSP 1 Score: 57.4 bits (137), Expect = 1.190e-5
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    1 QGRPVKLHLWDVAGSQL--TAQPCHHGLIGQGAEGVLYVVDVTSRESLQAVDDWDQALSKFYPPWTCKLLVGHKAD 222
            +GR  KL +WD AG +   T    ++    +GA+GV+ V DV+SR+S QA+  W + LS +  P   K++VG+K D
Sbjct:   75 EGRKYKLSIWDTAGQERFRTLTSSYY----RGAQGVILVYDVSSRQSFQALTSWFRELSMYTSPEVVKMIVGNKVD 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11042.1417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JYW2_9PHAE0.000e+091.67SH2 domain-containing protein n=2 Tax=Ectocarpus T... [more]
K3WC21_GLOUD4.480e-1626.27SH2 domain-containing protein n=1 Tax=Globisporang... [more]
A0A835YQQ8_9STRA3.920e-1133.11SH2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6U3NLC3_9STRA3.350e-739.29Hypothetical protein n=4 Tax=Lithodesmiaceae TaxID... [more]
A0A7S2N4U8_9STRA4.260e-738.10Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6T5NNE9_HETAK8.060e-634.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8H3TZN1_9TREE1.190e-539.47Uncharacterized protein n=1 Tax=Naganishia liquefa... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11042contigEcto-sp8_S_contig11042:1039..6613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score954.5
Seed ortholog evalue2e-275
Seed eggNOG ortholog2880.D7FGU6
Model size1512
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0084@1,KOG0084@2759
Cds size1512
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11042.1417.1prot_Ecto-sp8_S_contig11042.1417.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11042 1039..6613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.8140082-CDS-Ecto-sp8_S_contig11042:1038..12121681143189.8140082-CDS-Ecto-sp8_S_contig11042:1038..1212Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11042 1039..1212 +
1681143189.825275-CDS-Ecto-sp8_S_contig11042:1966..21361681143189.825275-CDS-Ecto-sp8_S_contig11042:1966..2136Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11042 1967..2136 +
1681143189.8344414-CDS-Ecto-sp8_S_contig11042:2740..29141681143189.8344414-CDS-Ecto-sp8_S_contig11042:2740..2914Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11042 2741..2914 +
1681143189.8436158-CDS-Ecto-sp8_S_contig11042:3519..39241681143189.8436158-CDS-Ecto-sp8_S_contig11042:3519..3924Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11042 3520..3924 +
1681143189.8524032-CDS-Ecto-sp8_S_contig11042:4927..51861681143189.8524032-CDS-Ecto-sp8_S_contig11042:4927..5186Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11042 4928..5186 +
1681143189.8610454-CDS-Ecto-sp8_S_contig11042:5777..59201681143189.8610454-CDS-Ecto-sp8_S_contig11042:5777..5920Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11042 5778..5920 +
1681143189.8717852-CDS-Ecto-sp8_S_contig11042:6426..66131681143189.8717852-CDS-Ecto-sp8_S_contig11042:6426..6613Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11042 6427..6613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11042.1417.1

>prot_Ecto-sp8_S_contig11042.1417.1 ID=prot_Ecto-sp8_S_contig11042.1417.1|Name=mRNA_Ecto-sp8_S_contig11042.1417.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=504bp
QGRPVKLHLWDVAGSQLTAQPCHHGLIGQGAEGVLYVVDVTSRESLQAVD
DWDQALSKFYPPWTCKLLVGHKADLPAYVVNDEALSLYVASASGFKGWCL
TVGSSEYGDYDVAARRGGGSGATAHGARHKGQSLSGEKQLSVSEAVRTLL
GHVFRSGGAARGASRPAGVLGLGASAGRATPLPSDHLQDALETMELLGLG
GKGTPPVQDENIKDGDTEENSRGWECADWPEKERSEDGSKGRPVEMHSEG
LGPLLERGRGPDPSWRQGIPGNGLAVATVGDDDANGGDPGWRHFAGRMGR
EKAEALLSGRPDGTFFLRRKGPSLLVLTYVASAKRPNSNATTPTSGARNR
KSYPSSRSPRMRDMLGSPQGEKLGKGGLSLEGVRDGLAGSTLVQHALLVH
EGGFFSDEKGRLGRFSTLEELLNSKISAIARHPLSFRRERDGYVLIDEDD
PAALSHEPAPSTASADLSPSTNPFARADKAASAHDRIIRGNPASSLAPTA
NGNL
back to top

mRNA from alignment at Ecto-sp8_S_contig11042:1039..6613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11042.1417.1 ID=mRNA_Ecto-sp8_S_contig11042.1417.1|Name=mRNA_Ecto-sp8_S_contig11042.1417.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5575bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11042:1039..6613+ (Ectocarpus species8 EcLAC_412)
CAGGGACGGCCGGTGAAGCTCCACCTCTGGGACGTAGCCGGGTCGCAGCT
TACGGCGCAGCCCTGTCACCACGGACTTATTGGGCAGGGTGCAGAGGGGG
TGCTGTACGTGGTGGACGTGACAAGCAGGGAGAGCCTACAGGCGGTCGAT
GACTGGGACCAAGCGCTTTCTAAAGTGAGGCAGAACGTAATCACGGACTC
TCCTAGCTTGCTCGTCACTCTGCAGCAGTAGGCTAGTAGGTTTACCTGTT
TTTTGTGTTTCAAGCTGTTCGCTGCTGTAGTAGACAACACACATTTATTT
CGCTTTTGCGCGCACGCACTTCACGCACGGCATTTCCTAGCTTGTGCTTC
ACCCTGCAGTGGCCAGCATATGCGCTTCATACGTTTTGCGCCTTTTTGTG
CTATTTGTTTTGCTTGGCTCAAGTCCGACCATGATCTATTTTTCGTATGC
CAAGGGGAAGGGTGGCGAGACGGAGGCGACTTGAGCGTTGGCCTATTTCA
CAATATTTGAACCATAGAAAGTGTGAACATTTTGGCAAGTGATGCCTGGT
CGAGGAGGTTTCTGGTTTTGTGCGTCGATGAGGCTATCGTTGTTGGGGCT
GTTCAGCTACGCCCTTCGCCCCCCCGATGCGCTCTCGCTGCGCATGTGTT
GATTGGCCGTATCTACAAGTTGCGTGCGTCAATCATCAAGGTTTTTGGCA
CATGTCTATGAAACCTCCATCCCAGTGCTCGGCCGTATGTGTCCAATATT
GTATTGCATGTCGTGTACAAACGCCACCGCACGGAAGTGTGTATACTCCC
TCACTAAATCCAGCATGATTTTGTGGAATTGTGGAGTGACGGAGCGTTTT
TTTCAGCACAGCCAGACAACCAACCCGCATCCTTACCCAGTGCGTCGAAC
GCCTTTTGCATTTGTTTTCCCGAGCAAGTTCTATCCCCCGTGGACATGCA
AGCTCTTGGTTGGACACAAAGCCGACCTCCCAGCCTACGTGGTGAACGAT
GAGGCGCTATCGCTCTACGTGGCCAGCGCGAGCGGCTTCAAGGGGTGGTG
CCTCACGGTGGGGAGCTCGGAGTACGGGGACTATGACGTAGCCGCCAGGT
GCAGTACCTGTGTGTTCTGTACATGTGGCTGGTGTTGGTTTTGCTAGCCG
TCTGACGAAGGTGTTTTGTTTCCGGGATGGCGATGTTGGACCGTGGAAAC
AGGAGTTACCGTCGCGGACCGTGAGCATCATGGAAGAGGTTTCCGTAAGA
GAGAGCCGTGCAAGTGAGCATCCATGTGTCCAAGCACATTGTGATTCGGG
AGCGACGCATGGCATCATGCGGACGGTGCCTGTTTCTTGTCCGTTTCTCC
TCCGATCAACAACAAAATGCTTTCATGAGGTTGCCACAGTGAAGTGGACA
ACAGCGACGGCATGGGGACGGACGGCCCGAGCCGTGGTAGGGAGACTACG
ACCCCAAAGGATCAAAAGACGATGCGTGTGCAGCGGGACCAACATTGTAG
ACATTGCCTGCAAGCCAAGAATTTGAAATATATCTAGTCACGAACCATTA
ACGTGTAGTGCCATTAGTGAACAGTAGGAGGAGTCTCTCATATGAGGTGT
CACTCATCTCGACTCGAGCGTGACAATATTTCATCGGTGTCTTCTCTGAG
AACGTTTTTTTTTTTTTCAACCCCCCGCCCCCCTTCTATATCAACGCTGC
AGGCGGGGGGGAGGAAGCGGTGCCACAGCACACGGGGCTCGACACAAGGG
CCAGAGCCTTAGCGGCGAGAAGCAGCTCTCTGTGTCGGAAGCCGTGCGAA
CTCTGCTTGGGCACGTCTTCCGATCGGGGGGAGCGGCACGGGGTGCCAGT
CGACCGGCGGGGGTGCTTGGCCTAGGGTAAGGAGAGTCGTGTGTCAGTGT
GATTCCGTGGTGCTAAGGATGTTGGTGATTGTCGTTTTTCTGGTTTGTCT
TTTTTGACGTCTGTCTGCGTGGCTTGCTAGACTGGGACTGTGCGACTGAT
GGATCTACTCTCGCCAAGTCGGTAGAGCAGCCTGATAACGAGGATTGCTT
CCATTTTTCTGCCAGGGAAATACCTCTGGTGGTTGTTGGGCGCTGTCCTG
CCGAAGGTCCCTAGCGGAGTGAATTTTTTCGTTCGATTCTCCGTACCCGT
ATCCGGTACGGGTCCACGTGCGAAACATGATGAGGACGGGCTACCGTTGC
CTACCCACCCTCCCGGGCGCGCATGCCATGGCCCGCCTCCCCAGGTTGGA
GGTTCGCTCTGCAAATGCCCTTGTGTTTTTAGTGACAAAAATCTCGCGTA
ACGAAGCCCAGATTTTGACCCCATTCTGACTTCTGGTTGGCTAGTGGTGC
GCTTCGTTTACCGCGCGCAAGCATATCACCAGGCTCCTATCCGCGAAGGC
CTCCGTCCGCTGTATCAGGGGTGATCCCACCTGTGCCCCTTCGGCTCGTC
CCTCGGTTATGTGTCGCTTCCTGCCGCATAGAGCCAGTGCGGGGAGAGCG
ACACCGCTCCCCTCCGACCACCTCCAAGACGCCCTTGAGACCATGGAACT
CCTCGGGCTAGGGGGTAAGGGGACACCCCCCGTCCAAGATGAGAACATCA
AGGATGGCGATACGGAAGAAAATTCTCGTGGTTGGGAGTGCGCAGATTGG
CCTGAAAAAGAACGATCCGAAGATGGGTCCAAGGGGCGGCCAGTAGAGAT
GCATTCTGAAGGTTTGGGGCCGTTGTTGGAGCGGGGCAGGGGGCCGGACC
CAAGCTGGAGGCAAGGGATTCCGGGGAATGGTTTGGCCGTGGCGACTGTT
GGTGATGACGACGCAAACGGCGGGGACCCTGGTTGGCGACACTTTGCGGG
GCGGATGGGACGAGAAAAAGCCGAAGCCCTGCTCAGGTAATGTTTTGTCG
TCGAGTTATTTGATGGATGTTGTGCGTATGGGGAGTGCTCATGAGTAGCA
GTTGGGTAGGGGTTGCCAACCGCATGGGAGTTCGTGCCCTCCGTAGGTAA
CGTTCTGCGCTCATAGGTATTCTGGACTGGTAGGTGTGACAATTGATGCA
TCGGTTCTTCGTCGTCTCACAGCCCCGACATCTTGGCGGCCACGAGGGTC
AGCATACATTTTTTCTTGAGCTCGGCCGGTGTGATTTCTCGCCGCTTCCT
AATCGGCAGTGCTAGCTTCTCGGGATGTTGTGGTGCGTTCTCGGTCGAGG
TGGCCTTGGCTCGGAACGAAACCGGTCACTTTTCTGATACCCGTCCTTTT
TTTCACTCAGACCGTCACTCGATACTTCACACGCATCGGCGATCTCCCGA
TACTTTCGCATTCGCGCTTGATACGATGTGTCATCGTTCGAGAGGTATTG
GTGCAGAATGTCAAATGGTTACAGTGGGGGGGCGTCAATAACGCGGGTTG
ATTGGCGCCGGTGGCCCTGTATAGCGCCGGTGAAATTGCTTGGCACGGAA
TGACCAAGTCATTCTGTACATTGAATCGCGCTCGTCACTCTGAATAGCGC
CGGTCGATGCACCGGGCACATGCCGACGTTATTGAGGGCCCTCCACCCTA
GTGAAAACGCCGAAAAAGAAATCGTTCACACTCGACGGAGATTTTCGGGA
ATAAGAGATACGAGACGAGCGATCCACCAGCCAATCGCCGCCGTCGGCCA
CAACATGAACAGGCTCAACAGTCGAACAAAGGCCCCGCACACCGAGCGCG
CACCATTCATCGACAGCATATTTAGTAAACCAACAAATCAACAGCAGCCT
GATGCCGTCCATGTCTTCCCGACATCTCAACCATGCCATCATTGTTTCGG
CCTACTCCGCCTGTCGAATGTTACTTCTGCGTCTCCCTCAACGAAAGAAT
TGTCTTTTTCCGCACCGCACCTCTGATCTGCATCCTCAGCGGACGACCGG
ACGGCACGTTTTTCTTGCGCCGCAAGGGTCCGTCGCTCCTAGTCCTGACA
TACGTCGCCTCTGCCAAGCGGCCGAATAGCAACGCGACCACACCAACCAG
TGGTGCCAGAAACCGGAAGAGTTACCCCTCGAGCCGATCGCCGCGGATGC
GAGACATGCTCGGGAGTCCTCAGGGAGAGAAGCTCGGAAAAGGTGGTCTT
TCTCTGGAGGGGGTCAGAGACGGCCTCGCCGGCAGCACGTTGGTTCAGGT
ACAAGGGCGACGGGGAACTTGGTTCTGTGCAATGTTTTTCACCGGTGTGT
TGCGGGTTCTGTGTGACCCGGTTAATTGGCGCGAGTGTCGTTCGCGAAGC
ATTGATGTATGCCGTGGCCCTTGCGGAGGTACGGTATTTGATATAACCAA
TGCGTTGATTTGCTTTGTTTGTTTTGGATGTTGAGTCATAGACCCAAACC
TGACACATGGACGGCGGACAAGATAATAGTTTCGACCAGCTCTACAGTGA
TAGACTATGGCGTTCCGCGACGGGAACCACGTGGTACGGAGTAAGACAAA
ATGCCGTTCGCATCGGCGAAGGGGTCGGGGTGTATGCCGGTGGTGGCAAT
GGCGGTATTTCAACCCCGGCACCCCCTCGTATACTCGTTTTTCGAAACTG
GTACATGTAGAGAATTGTCGAGCACGCATGCTGCGCTGTTCCATTACCCC
GACCACTCCGTACATTCACGCCAGCATCTGTCCCCCGATTCATCCTCACA
CGGAAGTTGTAGCTTTTCCGAAATCGATTGTCAAGCACCAGAGTCGGCAA
CGCCAGCCCCCCCCCCTGTTGACACGCGATGATACACAGCATGCTCTTTT
GGTGCACGAGGGAGGATTTTTCAGCGACGAAAAGGGCCGGCTGGGCCGCT
TCTCCACCCTCGAGGAACTCCTCAACTCCAAGATCAGCGCCATTGCGCGC
CACCCGTTGAGTTTCCGCCGGGAGCGGGATGGGTGAGCTTCAATGTTCGT
CTTGTGCCGGTCGCTCTGCTGTCACAAAACTCGCCAAACGTTCTTAGGGT
TTAAGTTGGACGTAGACGAAGCCAGAATAGGAGGAGAACTCCAGGCGTGT
ATGTACCCTTGAGTCTTGTTGCTACCTAGCTAATCACGCTGCGCGTAATT
CGATTCACGTTCTTCTTCCCCATGAACTGCTGCAACGGGTTCGCACTAAG
AAGAAGCACATGCGACGCAGAAGTCCGGAGAGGGCGGAGTTGGTTGGTGG
TTCGTCGTTGTTTCGGTCACCGAACCCTGCCTTGTTCATAGTGGCTCGAT
CGCCTCGATATTTAACGGGCGTGCGTTGTTGTGTCGACCTTCGATACGTC
GTGTGTGATCGGACGCGACTGACGCGATCGTCGCTAGATCGGTTCTGCGA
GCTCGACATCGAAGTCTGTTGCCTTGCTATTCGTTTTCTGTCCCCCTTCA
CTCGCTGGGTGTGTTCATGCGTCCCTCCACGCGGACAGGTACGTGCTGAT
CGACGAAGACGACCCTGCGGCTCTCTCCCACGAGCCGGCCCCTTCTACGG
CATCTGCGGACTTGTCGCCGTCCACGAATCCTTTCGCGAGGGCCGACAAG
GCCGCCTCCGCACACGACCGAATCATTCGCGGCAACCCGGCGTCCTCCCT
TGCTCCTACCGCCAACGGCAACCTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11042:1039..6613+

>mRNA_Ecto-sp8_S_contig11042.1417.1 ID=mRNA_Ecto-sp8_S_contig11042.1417.1|Name=mRNA_Ecto-sp8_S_contig11042.1417.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1512bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11042:1039..6613+ (Ectocarpus species8 EcLAC_412)
CAGGGACGGCCGGTGAAGCTCCACCTCTGGGACGTAGCCGGGTCGCAGCT
TACGGCGCAGCCCTGTCACCACGGACTTATTGGGCAGGGTGCAGAGGGGG
TGCTGTACGTGGTGGACGTGACAAGCAGGGAGAGCCTACAGGCGGTCGAT
GACTGGGACCAAGCGCTTTCTAAATTCTATCCCCCGTGGACATGCAAGCT
CTTGGTTGGACACAAAGCCGACCTCCCAGCCTACGTGGTGAACGATGAGG
CGCTATCGCTCTACGTGGCCAGCGCGAGCGGCTTCAAGGGGTGGTGCCTC
ACGGTGGGGAGCTCGGAGTACGGGGACTATGACGTAGCCGCCAGGCGGGG
GGGAGGAAGCGGTGCCACAGCACACGGGGCTCGACACAAGGGCCAGAGCC
TTAGCGGCGAGAAGCAGCTCTCTGTGTCGGAAGCCGTGCGAACTCTGCTT
GGGCACGTCTTCCGATCGGGGGGAGCGGCACGGGGTGCCAGTCGACCGGC
GGGGGTGCTTGGCCTAGGAGCCAGTGCGGGGAGAGCGACACCGCTCCCCT
CCGACCACCTCCAAGACGCCCTTGAGACCATGGAACTCCTCGGGCTAGGG
GGTAAGGGGACACCCCCCGTCCAAGATGAGAACATCAAGGATGGCGATAC
GGAAGAAAATTCTCGTGGTTGGGAGTGCGCAGATTGGCCTGAAAAAGAAC
GATCCGAAGATGGGTCCAAGGGGCGGCCAGTAGAGATGCATTCTGAAGGT
TTGGGGCCGTTGTTGGAGCGGGGCAGGGGGCCGGACCCAAGCTGGAGGCA
AGGGATTCCGGGGAATGGTTTGGCCGTGGCGACTGTTGGTGATGACGACG
CAAACGGCGGGGACCCTGGTTGGCGACACTTTGCGGGGCGGATGGGACGA
GAAAAAGCCGAAGCCCTGCTCAGCGGACGACCGGACGGCACGTTTTTCTT
GCGCCGCAAGGGTCCGTCGCTCCTAGTCCTGACATACGTCGCCTCTGCCA
AGCGGCCGAATAGCAACGCGACCACACCAACCAGTGGTGCCAGAAACCGG
AAGAGTTACCCCTCGAGCCGATCGCCGCGGATGCGAGACATGCTCGGGAG
TCCTCAGGGAGAGAAGCTCGGAAAAGGTGGTCTTTCTCTGGAGGGGGTCA
GAGACGGCCTCGCCGGCAGCACGTTGGTTCAGCATGCTCTTTTGGTGCAC
GAGGGAGGATTTTTCAGCGACGAAAAGGGCCGGCTGGGCCGCTTCTCCAC
CCTCGAGGAACTCCTCAACTCCAAGATCAGCGCCATTGCGCGCCACCCGT
TGAGTTTCCGCCGGGAGCGGGATGGGTACGTGCTGATCGACGAAGACGAC
CCTGCGGCTCTCTCCCACGAGCCGGCCCCTTCTACGGCATCTGCGGACTT
GTCGCCGTCCACGAATCCTTTCGCGAGGGCCGACAAGGCCGCCTCCGCAC
ACGACCGAATCATTCGCGGCAACCCGGCGTCCTCCCTTGCTCCTACCGCC
AACGGCAACCTC
back to top