mRNA_Ecto-sp8_S_contig1104.1415.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1104.1415.1
Unique NamemRNA_Ecto-sp8_S_contig1104.1415.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1104.1415.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 680 bits (1754), Expect = 2.130e-230
Identity = 383/458 (83.62%), Postives = 396/458 (86.46%), Query Frame = 1 
Query:    1 RSKEEDRGEFLRRARAQREGRARERLHVSSATTIQKVWRGRSCVGKWRQDERDAWDRKMHDVGRVKAMLAAAGTALQLPPAVLQTLLSQLVHFHAFPCDAGRFRAAMDLVLAAAPASDSAANSGGAGLFAAQPASSSGSDSDRLLGDNTWSLLVARLGAVCLQYISQVSATVAXXXXXXXXXRKNGAESRDIGGGXXXXCKDAMDDAEGAEGAVVAGAAAAEVGDAAEVAMRGFALLASSAAWRHRWPLSELAVVQRRCGVFLASLALGRVLLGTRSKTGADAGPGEELKKPSPTGRGR----EGVRLLLRTERERVGGEGSRAPTLFGVLRVAWDAAAAEAGGGEGRATQAVRLLCASSFQVLGIGIAEDGEGTARIETRPMSSSAVAGXXXXXXXXXPGGAHETAVPDRRRLLEAFAAAVLPAPRLLEHPLSASLMDPMLGGDGAAWWELVSVAGE 1362
            RSKEEDRGEFLRRARAQREGRARERLHVSSATTIQKVWRGRSCVGKWRQDERDAWDRKMHDVGRVKAMLAAAG ALQLPPAVLQ+LLSQLVHFHAFP DAGRFRAAMDLVLAAAPASD+A   GGAGLFAAQPASSSGSD+DRLLGDNTWSLLV RLGAVCLQY+SQVSAT A         RKNGAESRDIGGGXXX   DAMDDAE           +AEV DAAEVAMRGFALLAS AAWRHRW LSE   V+RRC VFLASLALGRVL+ TRSKTG +AGPGE L+KPSPT        EG+RL LRTERERVGGEGSRAPTLFGVLRVAWDAA AEAGGGEGRATQAVRLLCASSFQ+LGIG+AEDGE TARIETRPMSSSAVAG         PGGAHETAVPDRRRLLEAFAAAVLPAPRLLEHPL A+LMDPMLGGDG AWWELVSVAGE
Sbjct:   17 RSKEEDRGEFLRRARAQREGRARERLHVSSATTIQKVWRGRSCVGKWRQDERDAWDRKMHDVGRVKAMLAAAGKALQLPPAVLQSLLSQLVHFHAFPSDAGRFRAAMDLVLAAAPASDNATTPGGAGLFAAQPASSSGSDNDRLLGDNTWSLLVTRLGAVCLQYMSQVSATAAAAGGRS---RKNGAESRDIGGGXXXCEGDAMDDAEXXXXXXXXXXXSAEVVDAAEVAMRGFALLASPAAWRHRWSLSEPVAVKRRCRVFLASLALGRVLMRTRSKTGEEAGPGEALRKPSPTXXXXXXXXEGLRLSLRTERERVGGEGSRAPTLFGVLRVAWDAAVAEAGGGEGRATQAVRLLCASSFQILGIGVAEDGESTARIETRPMSSSAVAGGGARAAAG-PGGAHETAVPDRRRLLEAFAAAVLPAPRLLEHPLRAALMDPMLGGDGVAWWELVSVAGE 470
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1104.1415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKM0_ECTSI2.130e-23083.62HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1104contigEcto-sp8_S_contig1104:4238..8630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score689.5
Seed ortholog evalue1.1e-195
Seed eggNOG ortholog2880.D7FKM0
Model size1364
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons4
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0942@2759
Ec32 ortholog descriptionHECT
Ec32 orthologEc-09_000720.1
EC2.3.2.26
Cds size1362
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.705766-CDS-Ecto-sp8_S_contig1104:4239..53701681143189.705766-CDS-Ecto-sp8_S_contig1104:4239..5370Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1104 4240..5370 -
1681143189.7170773-CDS-Ecto-sp8_S_contig1104:5816..59251681143189.7170773-CDS-Ecto-sp8_S_contig1104:5816..5925Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1104 5817..5925 -
1681143189.7249408-CDS-Ecto-sp8_S_contig1104:6462..65391681143189.7249408-CDS-Ecto-sp8_S_contig1104:6462..6539Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1104 6463..6539 -
1681143189.733015-CDS-Ecto-sp8_S_contig1104:8585..86301681143189.733015-CDS-Ecto-sp8_S_contig1104:8585..8630Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1104 8586..8630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1104.1415.1prot_Ecto-sp8_S_contig1104.1415.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1104 4240..8630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1104.1415.1

>prot_Ecto-sp8_S_contig1104.1415.1 ID=prot_Ecto-sp8_S_contig1104.1415.1|Name=mRNA_Ecto-sp8_S_contig1104.1415.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=454bp
RSKEEDRGEFLRRARAQREGRARERLHVSSATTIQKVWRGRSCVGKWRQD
ERDAWDRKMHDVGRVKAMLAAAGTALQLPPAVLQTLLSQLVHFHAFPCDA
GRFRAAMDLVLAAAPASDSAANSGGAGLFAAQPASSSGSDSDRLLGDNTW
SLLVARLGAVCLQYISQVSATVAAAAAGGGRSRKNGAESRDIGGGGGGGC
KDAMDDAEGAEGAVVAGAAAAEVGDAAEVAMRGFALLASSAAWRHRWPLS
ELAVVQRRCGVFLASLALGRVLLGTRSKTGADAGPGEELKKPSPTGRGRE
GVRLLLRTERERVGGEGSRAPTLFGVLRVAWDAAAAEAGGGEGRATQAVR
LLCASSFQVLGIGIAEDGEGTARIETRPMSSSAVAGGEGGGAAAGPGGAH
ETAVPDRRRLLEAFAAAVLPAPRLLEHPLSASLMDPMLGGDGAAWWELVS
VAGE
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mRNA from alignment at Ecto-sp8_S_contig1104:4238..8630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1104.1415.1 ID=mRNA_Ecto-sp8_S_contig1104.1415.1|Name=mRNA_Ecto-sp8_S_contig1104.1415.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4393bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1104:4238..8630- (Ectocarpus species8 EcLAC_412)
AGGAGCAAAGAAGAAGACCGGGGCGAGTTTCTGCGAAGGGCGAGGGTGAG
GCAATGTTTGTTGTGTACATCCGTTGTAGACTGCTGAGGTCTACAGCAGA
CAGTACCACGAGCAGGCACGGAAAAGATGCTGTAAATTGAAGCTCGTTGC
CAGTTGGGGAGTAGTGGTGGCGGAATTTGGTTTGTGCGCCTGACTGTGCG
TCAACGAGATCTCGCATGCTTCGCAACTGCTACACCTCGATTGTACTGCT
GTACATGGTCGGTGGATCACCACGCGGCTTCGCGAGAATGGGCTTCTAGA
TGCCCGTTCGATGGAAAAACTCCCGGGAGTGGGGACGACGAAGTCCGATC
TACTCTCATCGATGTATGATAGTATCCAGAACAGGAGGGGTACTGGGCGG
GCTCACTTGCTGTGCTGCTGTGGTACTGCAAGCACCCCGCCTTACCTATA
GTTCAACCTGAACCTGTGGAAGGTTGGGTGCTTTTGGTTGGGTTGGTCGT
GTTCCCGCCCCGTTGTTTTCGCCCCGCCAGCGCAAGGCTTAAGCTTCAGA
CCTCGGCGCTCAACCCCAGCTTAACGCGTGGAATGAGGGGTAAAGGCGGC
TACGCATCACCGTGGTCGGGCGGTTCTATGCTACTTGGAAAAAAAATGAA
TTGTGGGCGGTCATTTGTTCGGGGTTGCTGTGGTCGCTTCCAAGGAATTG
TCCGCATCTCTCCGCTGCTGTCCGAAACGAAGATACGTGTTGCGTGTGCA
CCTGTACTTACCATTACGGCGCCTTTGCATTTCGCTCTCCTTTCCGCAAC
CAAAATGAAGTCCGCGTGTCTTTGTCATTACCTGCGTGTGAACTACAGCA
CCGTAAACGACACAAGATAACACACCCACGTAAGATAAAACATCCACACA
ATACAACGCCAGGTTTTCTAGTATTTGCTTTGTTCTACACCGTCCGTGGA
GCCGAAATACCACCCGGGTTACACAAGATATCACACCCCGTGAGGTTCGG
ACGCATGTGAACACGGAGCCCATGCTTCTATCACCCCGGCGATGACTCAG
AAGAGCCGGCGATGACTCAGAAGAGTTTCCTGGTGGCATGCAAGATGGCC
CACCAGGGAACATGGGCAACACGCCCTTTGAGTGCGCACCCCACCCCGTA
CGCGGTCCTTGAATCAAACCACTCACACCTCCCCGCCTTTATTTGCATGG
TACGACTTTCTTTGGGCCAGGCGGTACAATAGTGACGGATGAAACCTCTT
TTCATTGCTTCATGGCAGCTCTCTCTTTCGCTGTTCCGAGAGAGGGCTGT
TGGCGTTCTTGCCGGGGATATATATGTGTGTAACGCCTACCCCCACCCCT
TGCTTCCCGACGACTGGAAAAAAAGACGCTCGGCAGGAACTTCACTGCTG
TGTTGTCGGTGCTATCACCCCCGCTCAGTTCCATACACCCTGCCAGTGCG
GCGGCAGTGCGGTGTTATTTTCAGGCAGGGGTATCATCCCCACGCCCCCC
GCACGTGTGGCCGAAAGCACGGTGGATAATTCTTCGTGGGCGGTGCTAAC
ACGCGCCCTAGTTTCCGCACAAGAGGAGTCCCGGAAAGTGCGCGATTATG
GTATATCGCACCCCCTGGTTACCACACCCCCTTCATGGCTCCTATGATAC
GACCTGCAGGTTATCACCCGGGCTACACAAGATAGCACACACCCCACAGA
ATACAACACCCGGTGATACTTTACTTGAAAGCCAAAATGTTGTCCCCGGG
ATGTGTTGTCTTGTGTCATATACGACAACGGTAGTTTTCACATCGCCACC
GCGCCAAACTGCTGTGTTTGATCTGACAACATGTGGTCAGCAGTGTGCGT
CCACACTCACCAACTTGGCGGTACTTCATGCCCAATCAACATAATATCAA
AGCATTATAACTTGAGCACCATTTGTGAGGCGCACTACATGTGTAACGAT
TTGTAGCCTATCCCTAGGAACTAAGAACCCAAGCCTAGGCAAAACTATTA
TAGGGGTTCTGAAGTGCGGGCGCTACCGGCAGCTGTTCCTGTTGCCTGGT
TTCTCATGTGCCTGCCTGCATGCATGCTTCCTTTTCTTCAGGCCCAACGG
GAGGGGCGGGCGCGTGAGCGGCTCCACGTCTCCAGCGCGACAACCATCCA
GAAGGTTTGGAGGGGAAGGTGCGTGAGTCATTTTTCACGTTCACAGCGAA
CTGCCCATACACCTGTTCCCCATCCACCCACACCTCGCGTCAGCCTGCCC
GCGGCACCAAATCTGGAGGCGCTGTCTAGTGGTACACGCGTTGAACGCGG
TACTGATTTGCGGAACGGCACCAATGGTTTCGTCTGAGGGGAACAGGCCA
CCTATCTCCGCCAGACAGAGATTTCGCAGCGCCAGAGGAAGGGTCTTTTG
GTGTCGTGCTGTCTTGACGCGGGTTCATACCGACACCAGAGGGCAGCCGC
AAGCCGCAAAGGCGTGCGGTGCCTCTAGGAGCAACTGTCTTCCAGAAGTC
GCAGTTTTCCGCTGGTGGTCGGGGTCGGTTCACAGGAGACAGCAGGCACC
GCAAGCGAACGCTACAACACTAGCGCGCGCCCTCGAGACACCGGTAAACA
TGTGAGGGGCGAATCGCTACTGCTGTCGTCATGCCGGTCAGCTACGTCTG
TTGTCGTCGCCAACCTTGTGCTTCGCCCCCCCCCCGCTTGGCCTTTCTCG
GATAGGTCATGCGTGGGAAAGTGGCGGCAAGACGAGCGCGATGCGTGGGA
CAGGAAGATGCACGATGTCGGTCGAGTTAAGGCCATGCTCGCCGCGGCAG
GAACGGCGTTGCAGGTGAAGGAAGGTGCCTGGAGATTTTTTAGCGGTGTA
CGCGTGCACGGGGTTGATGTGCGTGGCTAGGTCATCCACGTGGAAATAAG
AAATAAGTGTATTGTGGCGTGTTGGTGTGTGTGGGGGGGGTGATATGTCA
ATGGTGCCTCTATTCCGGCACTAGTGTTCCAGCACGGGCTTGGCGTTCAC
AATATGGCGTGCACCCGATGAAGTAGTACAATACCAAAACTTGGTGCGGC
TTGCAGCGTTGTATCGACCCATGGTGTGATTGCCTCGCATCACCCCTGTG
GTATTTGTACCCGAGATTTGCCACCAGTATGGAGTGCAGCGTCGTCTCTC
CGGGTATATAGGTGCCCTCTAGGTCTGTGCTGCATCTCACGGAACCTCCC
ACCCGCCCTCCCACCCCCGCCCCCCGCCCTATTCTCTTCTCGCTCCCGCA
CCCAACGCAGCTCCCGCCAGCCGTTCTCCAGACCTTACTCTCTCAGCTGG
TACACTTCCACGCCTTTCCGTGCGATGCTGGCCGATTTCGCGCCGCCATG
GACCTGGTGCTTGCCGCCGCCCCAGCGAGCGATAGCGCCGCCAACTCGGG
GGGCGCAGGTCTCTTCGCAGCTCAGCCGGCGTCTTCCAGCGGCAGCGACA
GCGACCGGCTCTTGGGGGACAACACGTGGTCGCTGCTGGTTGCCCGGCTA
GGGGCGGTGTGCCTGCAGTACATAAGTCAGGTATCGGCAACGGTGGCGGC
GGCGGCGGCGGGAGGGGGGCGGTCGCGGAAAAACGGCGCGGAAAGCCGGG
ATATCGGCGGCGGCGGCGGCGGCGGCTGCAAAGACGCAATGGACGATGCT
GAGGGCGCGGAGGGTGCTGTCGTGGCCGGGGCGGCGGCGGCCGAGGTGGG
TGATGCCGCGGAGGTGGCTATGCGGGGATTCGCGCTGCTAGCTTCCTCGG
CGGCGTGGCGGCATCGATGGCCGCTGTCCGAGCTGGCCGTTGTCCAACGG
CGTTGCGGCGTGTTTCTCGCCTCGCTCGCGCTCGGCAGGGTCTTGTTGGG
GACGCGGAGCAAGACGGGGGCGGACGCGGGGCCTGGAGAAGAGTTAAAGA
AACCCTCACCAACAGGAAGAGGAAGAGAAGGTGTTCGGTTGTTGCTACGG
ACGGAGAGGGAAAGGGTCGGCGGCGAGGGGAGTCGAGCGCCGACGCTCTT
CGGAGTCCTCCGCGTCGCGTGGGACGCGGCAGCAGCAGAGGCCGGCGGGG
GGGAGGGCAGAGCGACGCAAGCGGTGCGGCTGCTGTGCGCCTCCTCCTTC
CAAGTTCTCGGGATCGGCATCGCGGAGGACGGGGAGGGCACGGCGCGCAT
CGAGACCCGTCCGATGTCGTCATCAGCGGTGGCTGGAGGAGAAGGAGGAG
GAGCGGCTGCCGGGCCAGGCGGCGCGCACGAAACGGCGGTGCCGGACAGG
CGACGACTGCTGGAGGCGTTTGCGGCAGCCGTTCTGCCGGCACCGAGGCT
GCTGGAGCACCCCCTGAGTGCGTCCCTGATGGACCCGATGCTAGGGGGCG
ATGGGGCGGCGTGGTGGGAGTTGGTGTCCGTGGCAGGGGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1104:4238..8630-

>mRNA_Ecto-sp8_S_contig1104.1415.1 ID=mRNA_Ecto-sp8_S_contig1104.1415.1|Name=mRNA_Ecto-sp8_S_contig1104.1415.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1362bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1104:4238..8630- (Ectocarpus species8 EcLAC_412)
AGGAGCAAAGAAGAAGACCGGGGCGAGTTTCTGCGAAGGGCGAGGGCCCA
ACGGGAGGGGCGGGCGCGTGAGCGGCTCCACGTCTCCAGCGCGACAACCA
TCCAGAAGGTTTGGAGGGGAAGGTCATGCGTGGGAAAGTGGCGGCAAGAC
GAGCGCGATGCGTGGGACAGGAAGATGCACGATGTCGGTCGAGTTAAGGC
CATGCTCGCCGCGGCAGGAACGGCGTTGCAGCTCCCGCCAGCCGTTCTCC
AGACCTTACTCTCTCAGCTGGTACACTTCCACGCCTTTCCGTGCGATGCT
GGCCGATTTCGCGCCGCCATGGACCTGGTGCTTGCCGCCGCCCCAGCGAG
CGATAGCGCCGCCAACTCGGGGGGCGCAGGTCTCTTCGCAGCTCAGCCGG
CGTCTTCCAGCGGCAGCGACAGCGACCGGCTCTTGGGGGACAACACGTGG
TCGCTGCTGGTTGCCCGGCTAGGGGCGGTGTGCCTGCAGTACATAAGTCA
GGTATCGGCAACGGTGGCGGCGGCGGCGGCGGGAGGGGGGCGGTCGCGGA
AAAACGGCGCGGAAAGCCGGGATATCGGCGGCGGCGGCGGCGGCGGCTGC
AAAGACGCAATGGACGATGCTGAGGGCGCGGAGGGTGCTGTCGTGGCCGG
GGCGGCGGCGGCCGAGGTGGGTGATGCCGCGGAGGTGGCTATGCGGGGAT
TCGCGCTGCTAGCTTCCTCGGCGGCGTGGCGGCATCGATGGCCGCTGTCC
GAGCTGGCCGTTGTCCAACGGCGTTGCGGCGTGTTTCTCGCCTCGCTCGC
GCTCGGCAGGGTCTTGTTGGGGACGCGGAGCAAGACGGGGGCGGACGCGG
GGCCTGGAGAAGAGTTAAAGAAACCCTCACCAACAGGAAGAGGAAGAGAA
GGTGTTCGGTTGTTGCTACGGACGGAGAGGGAAAGGGTCGGCGGCGAGGG
GAGTCGAGCGCCGACGCTCTTCGGAGTCCTCCGCGTCGCGTGGGACGCGG
CAGCAGCAGAGGCCGGCGGGGGGGAGGGCAGAGCGACGCAAGCGGTGCGG
CTGCTGTGCGCCTCCTCCTTCCAAGTTCTCGGGATCGGCATCGCGGAGGA
CGGGGAGGGCACGGCGCGCATCGAGACCCGTCCGATGTCGTCATCAGCGG
TGGCTGGAGGAGAAGGAGGAGGAGCGGCTGCCGGGCCAGGCGGCGCGCAC
GAAACGGCGGTGCCGGACAGGCGACGACTGCTGGAGGCGTTTGCGGCAGC
CGTTCTGCCGGCACCGAGGCTGCTGGAGCACCCCCTGAGTGCGTCCCTGA
TGGACCCGATGCTAGGGGGCGATGGGGCGGCGTGGTGGGAGTTGGTGTCC
GTGGCAGGGGAG
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