mRNA_Ecto-sp8_S_contig1104.1414.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1104.1414.1
Unique NamemRNA_Ecto-sp8_S_contig1104.1414.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1104.1414.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 6.450e-71
Identity = 233/305 (76.39%), Postives = 237/305 (77.70%), Query Frame = 2 
Query:    2 GGVGRQMESPELTDXXXXXXXXXXDEAFSXXXXXXXXXXXXXXXXXXAKDDSGVSG--DVRLEAIVRRHRRRCAMRTEALAAHHQSLRETKGSSRGXXXXXXXXXXXXXXXXXXXXXXSMVFEEIEAMAAAAGRLADPVVVGRLFDSILPPVARGSSEGQQTGLGGGSRAEA---------------FSTAKAAGGSAGAESRSAXXXXXXXXXXXXXXPVLALCSLYADLVMDGVRAAGSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXVLNALAFGRPKAPIAARLWGYLQRGQDLAVYAKRG 865
            GG GRQMESPELTDXXXXXXXXXX     XXXXXXXXXXXXXXXXXX           DVRLEAIVRRHRRRCAMRTE+LAAH QSLRETKGSSRG       XXXXXXXXXXXXXXX MVFEEIEAMAAAAGRLADPVVVGRLFDSILPPVAR SSEGQQTGLGGGSRAEA                     AG + G ++                 PVLALCSLYADLVMDGVRAAGSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXVLNALAFGRPKAPIAARLWGYLQRGQDLAVYAKRG
Sbjct:  541 GGAGRQMESPELTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDVRLEAIVRRHRRRCAMRTESLAAHQQSLRETKGSSRGGYSSGSKXXXXXXXXXXXXXXXXMVFEEIEAMAAAAGRLADPVVVGRLFDSILPPVARSSSEGQQTGLGGGSRAEASXXXXXXXXXXXXXXXXXXXLAGDAKGDDNDD-------------DDPVLALCSLYADLVMDGVRAAGSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXVLNALAFGRPKAPIAARLWGYLQRGQDLAVYAKRG 832
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1104.1414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKM0_ECTSI6.450e-7176.39HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1104contigEcto-sp8_S_contig1104:1368..2852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score242.3
Seed ortholog evalue2.8e-61
Seed eggNOG ortholog2880.D7FKM0
Model size867
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0942@2759
EC2.3.2.26
Cds size846
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.639751-CDS-Ecto-sp8_S_contig1104:1367..21981681143189.639751-CDS-Ecto-sp8_S_contig1104:1367..2198Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1104 1368..2198 -
1681143189.656785-CDS-Ecto-sp8_S_contig1104:2818..28331681143189.656785-CDS-Ecto-sp8_S_contig1104:2818..2833Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1104 2819..2833 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.6699655-UTR-Ecto-sp8_S_contig1104:2833..28521681143189.6699655-UTR-Ecto-sp8_S_contig1104:2833..2852Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1104 2834..2852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1104.1414.1prot_Ecto-sp8_S_contig1104.1414.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1104 1368..2833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1104.1414.1

>prot_Ecto-sp8_S_contig1104.1414.1 ID=prot_Ecto-sp8_S_contig1104.1414.1|Name=mRNA_Ecto-sp8_S_contig1104.1414.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=282bp
MESPELTDDDEDDDDVAMDEAFSGAASERGGAGAAPGGGAGAKDDSGVSG
DVRLEAIVRRHRRRCAMRTEALAAHHQSLRETKGSSRGGYSSGSKRRVSS
GGGDERESAASMVFEEIEAMAAAAGRLADPVVVGRLFDSILPPVARGSSE
GQQTGLGGGSRAEAFSTAKAAGGSAGAESRSALAGGAKGDDDDDDDPVLA
LCSLYADLVMDGVRAAGSAAAAAGGSSTTAGGSSAAAGKSAVAPGKSVLN
ALAFGRPKAPIAARLWGYLQRGQDLAVYAKRG
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mRNA from alignment at Ecto-sp8_S_contig1104:1368..2852-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1104.1414.1 ID=mRNA_Ecto-sp8_S_contig1104.1414.1|Name=mRNA_Ecto-sp8_S_contig1104.1414.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1485bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1104:1368..2852- (Ectocarpus species8 EcLAC_412)
GGGGGGCGTTGGAAGGCAGATGGAATCGCCGGAGGTGAGGTGCAAAGTAC
AATCCTCCTTTGAGCCGAAAACGGGGCGCCGGTAGTTTGATGTTTTGGGG
CCGAGGAACGCAGGGTTGGCCCGATTTGGACGTGGCGGCCAGTTTTCGAT
GTCTTTGGTGTCGTGTTTTGTCTCCGCGTGCCGGTCGGTCGCGGTCTCCG
CTGCCCGGGAGGTAAAAGGCTACCGGCTGTGTTCGAGTGTAAACCCGCCG
TTCAATCGGGGGGCAGACGTGCCGGTCTTTGCCCTGTGTGGATTGGGGGT
GACCTCCCGAGGGGGATGGGATAAAATTTAGGTACCCGGGAAGGTACTGG
GGTATGGTCGTCCACTCTTGGCACATCCTGTTGTTGCGTGTCTCGAACAG
CGGGGGCCCTATTTCGCTTGTTGTGACGCGTTTGCGGGCCTCCTCCCGGT
GAGGTCTCCTTCCGTCCGGCGGCGGCGGCGGCGGCGCCGGTGCTTCGGGG
GGGGATCAGGGGACAACCGGCGAGGAGAAGCCTGATCAACTTCGCCCTTG
GACCCGCTTAATTTTTGTGACAGGTTGGTTCAAGGTCTCACCTTACCCGA
AACCCCGCCTGTCCTACCGGTGTTTGTGTCTGTGATTTTTTTGTTCCGAA
AAAGCTTACGGACGACGACGAAGACGACGACGACGTCGCCATGGACGAGG
CGTTCTCTGGCGCGGCGTCGGAGCGAGGCGGAGCAGGGGCGGCACCCGGC
GGCGGCGCAGGAGCGAAAGACGACTCCGGCGTCAGCGGGGACGTGCGCCT
CGAGGCCATCGTGCGGCGCCATCGTCGCCGCTGCGCCATGCGGACCGAGG
CGCTGGCGGCCCACCATCAATCGCTACGCGAAACGAAGGGCTCCTCCCGG
GGGGGCTACTCGAGCGGTTCGAAGCGGCGTGTAAGCAGCGGCGGCGGCGA
CGAGAGGGAAAGTGCGGCGTCGATGGTGTTCGAGGAGATCGAAGCGATGG
CGGCGGCGGCGGGGAGGCTTGCAGACCCCGTCGTAGTCGGCAGGCTTTTC
GATAGTATCCTTCCCCCCGTTGCACGGGGCTCGTCCGAGGGGCAGCAGAC
CGGCCTCGGCGGCGGCTCTCGCGCGGAGGCGTTTTCGACAGCTAAAGCCG
CGGGGGGCAGCGCCGGGGCGGAGAGCAGGAGCGCGCTCGCCGGCGGCGCA
AAGGGCGATGACGATGACGACGACGACCCGGTCCTCGCCCTGTGCTCGTT
GTACGCGGATCTGGTCATGGACGGGGTGAGAGCGGCCGGGTCCGCCGCGG
CCGCCGCTGGCGGCAGTAGCACCACTGCGGGAGGTTCCTCCGCGGCCGCC
GGGAAATCGGCGGTGGCGCCCGGGAAGTCGGTGCTGAACGCGCTGGCGTT
CGGGAGGCCTAAGGCTCCGATCGCCGCTCGCCTGTGGGGTTACCTCCAGC
GGGGGCAAGACCTCGCGGTGTACGCGAAGAGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1104:1368..2852-

>mRNA_Ecto-sp8_S_contig1104.1414.1 ID=mRNA_Ecto-sp8_S_contig1104.1414.1|Name=mRNA_Ecto-sp8_S_contig1104.1414.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1104:1368..2852- (Ectocarpus species8 EcLAC_412)
ATGGAATCGCCGGAGCTTACGGACGACGACGAAGACGACGACGACGTCGC
CATGGACGAGGCGTTCTCTGGCGCGGCGTCGGAGCGAGGCGGAGCAGGGG
CGGCACCCGGCGGCGGCGCAGGAGCGAAAGACGACTCCGGCGTCAGCGGG
GACGTGCGCCTCGAGGCCATCGTGCGGCGCCATCGTCGCCGCTGCGCCAT
GCGGACCGAGGCGCTGGCGGCCCACCATCAATCGCTACGCGAAACGAAGG
GCTCCTCCCGGGGGGGCTACTCGAGCGGTTCGAAGCGGCGTGTAAGCAGC
GGCGGCGGCGACGAGAGGGAAAGTGCGGCGTCGATGGTGTTCGAGGAGAT
CGAAGCGATGGCGGCGGCGGCGGGGAGGCTTGCAGACCCCGTCGTAGTCG
GCAGGCTTTTCGATAGTATCCTTCCCCCCGTTGCACGGGGCTCGTCCGAG
GGGCAGCAGACCGGCCTCGGCGGCGGCTCTCGCGCGGAGGCGTTTTCGAC
AGCTAAAGCCGCGGGGGGCAGCGCCGGGGCGGAGAGCAGGAGCGCGCTCG
CCGGCGGCGCAAAGGGCGATGACGATGACGACGACGACCCGGTCCTCGCC
CTGTGCTCGTTGTACGCGGATCTGGTCATGGACGGGGTGAGAGCGGCCGG
GTCCGCCGCGGCCGCCGCTGGCGGCAGTAGCACCACTGCGGGAGGTTCCT
CCGCGGCCGCCGGGAAATCGGCGGTGGCGCCCGGGAAGTCGGTGCTGAAC
GCGCTGGCGTTCGGGAGGCCTAAGGCTCCGATCGCCGCTCGCCTGTGGGG
TTACCTCCAGCGGGGGCAAGACCTCGCGGTGTACGCGAAGAGGGGG
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