mRNA_Ecto-sp8_S_contig11033.1409.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11033.1409.1
Unique NamemRNA_Ecto-sp8_S_contig11033.1409.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Match: D8LGV5_ECTSI (Methyltrans_SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGV5_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 5.260e-45
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIVHV 222
            QTLFKPSLLATKEGGV+VATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIVHV
Sbjct:  184 QTLFKPSLLATKEGGVIVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIVHV 257          
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Match: A0A7S3WTR1_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WTR1_EMIHU)

HSP 1 Score: 101 bits (251), Expect = 1.810e-25
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIVHV 222
            Q+LFKP +LAT+ GG V+A NHV++V+  EWV++L +CA KAGR ++ V VL PE D+PSPDG+HPLK+A+  V
Sbjct:   69 QSLFKPCVLATRPGGTVLAVNHVASVELDEWVDSLERCAKKAGRPLEDVTVLPPEQDYPSPDGKHPLKMALARV 142          
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Match: A0A7S4BNE7_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNE7_CHRCT)

HSP 1 Score: 105 bits (262), Expect = 7.190e-25
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIV 216
            Q+LFKP +LATK GG V+A NHV+TVD   W++ L +CA KAGR + SV VL PE+DFPSPDGRHPLK+AI 
Sbjct:  351 QSLFKPCVLATKRGGTVIAVNHVATVDLDSWLDVLQRCATKAGRPLRSVSVLPPEEDFPSPDGRHPLKIAIA 422          
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Match: A0A7S2MC54_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MC54_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 4.050e-24
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIVHV 222
            ++LFKP +LAT+ GG V+A NHV++VD  EW+E L++CA KA + +  +++L PE DFPSPDG+HPLK+A+  V
Sbjct:   55 ESLFKPCVLATRPGGTVLAVNHVASVDVDEWIEKLNRCAKKADQPLADLKILSPEADFPSPDGKHPLKIALARV 128          
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Match: R1DME3_EMIHU (Methyltrans_SAM domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DME3_EMIHU)

HSP 1 Score: 101 bits (251), Expect = 1.570e-23
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIVHV 222
            Q+LFKP +LAT+ GG V+A NHV++V+  EWV++L +CA KAGR ++ V VL PE D+PSPDG+HPLK+A+  V
Sbjct:  291 QSLFKPCVLATRPGGTVLAVNHVASVELDEWVDSLERCAKKAGRPLEDVTVLPPEQDYPSPDGKHPLKMALARV 364          
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Match: A0A2E3BEH7_9GAMM (SAM-dependent methyltransferase n=1 Tax=Oleispira sp. TaxID=2024846 RepID=A0A2E3BEH7_9GAMM)

HSP 1 Score: 100 bits (249), Expect = 1.880e-23
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIVHV 222
            Q+LFKPSLLATK+GG ++  N+V+ VD  EW+E+L +CA KAGR + S+++LLP+ DFPSPDG  PLK+AI  +
Sbjct:  260 QSLFKPSLLATKDGGQLICCNNVAQVDLDEWLESLKRCAIKAGRPLKSIEILLPDSDFPSPDGNPPLKIAICQL 333          
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Match: A0A2V1GTL4_9GAMM (SAM-dependent methyltransferase n=1 Tax=Pelagibaculum spongiae TaxID=2080658 RepID=A0A2V1GTL4_9GAMM)

HSP 1 Score: 99.8 bits (247), Expect = 3.720e-23
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIVHV 222
            Q+LFKPSLLATKEGG ++  N+V+ VD  EW+E L +CA KAGR + S++VLLP+ DFPSPDG  PLK+AI  +
Sbjct:  261 QSLFKPSLLATKEGGQLICCNNVAQVDRDEWLELLQRCAIKAGRPLKSIEVLLPDSDFPSPDGNPPLKIAICQL 334          
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Match: A0A7S3BKP9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BKP9_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 6.790e-23
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPS-PDGRHPLKVAIVHV 222
            Q+LFKP+ LAT+ GG V+ATNHVSTVD AEW ++L++CAAKAGR +  +Q L PE DFP   DGR PLK+A+  V
Sbjct:   57 QSLFKPACLATRPGGTVLATNHVSTVDEAEWHDSLARCAAKAGRPLVDIQTLSPEHDFPMLVDGRSPLKLALAIV 131          
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Match: R4YLY4_OLEAN (Rhodopsin-like GPCR superfamily protein n=1 Tax=Oleispira antarctica RB-8 TaxID=698738 RepID=R4YLY4_OLEAN)

HSP 1 Score: 99.0 bits (245), Expect = 7.260e-23
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIVHV 222
            Q+LFKPSLLATK GG ++  N+V+ VD  EW+E+L +CA KAGR + S+++LLPE DFPSPDG  PLKVAI  +
Sbjct:  261 QSLFKPSLLATKSGGQLICCNNVAQVDRDEWLESLKRCAIKAGRPLKSIEMLLPEADFPSPDGNPPLKVAICQL 334          
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Match: A0A1X1QMF3_9GAMM (SAM-dependent methyltransferase n=1 Tax=Cycloclasticus sp. symbiont of Poecilosclerida sp. N TaxID=1840472 RepID=A0A1X1QMF3_9GAMM)

HSP 1 Score: 96.7 bits (239), Expect = 5.380e-22
Identity = 43/74 (58.11%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQVLLPEDDFPSPDGRHPLKVAIVHV 222
            Q+LFKPSLLATK+GG ++  N+V+ VD   W+E+L +CA KAGR + S++VLLP+ DFPSPDG  PLK+AI  +
Sbjct:  261 QSLFKPSLLATKDGGQLICCNNVAQVDRDGWLESLKRCAIKAGRPLKSIKVLLPDTDFPSPDGNPPLKIAICQL 334          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11033.1409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGV5_ECTSI5.260e-4598.65Methyltrans_SAM domain-containing protein n=2 Tax=... [more]
A0A7S3WTR1_EMIHU1.810e-2558.11Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S4BNE7_CHRCT7.190e-2565.28Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S2MC54_9EUKA4.050e-2454.05Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
R1DME3_EMIHU1.570e-2358.11Methyltrans_SAM domain-containing protein n=1 Tax=... [more]
A0A2E3BEH7_9GAMM1.880e-2358.11SAM-dependent methyltransferase n=1 Tax=Oleispira ... [more]
A0A2V1GTL4_9GAMM3.720e-2360.81SAM-dependent methyltransferase n=1 Tax=Pelagibacu... [more]
A0A7S3BKP9_9EUKA6.790e-2361.33Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
R4YLY4_OLEAN7.260e-2360.81Rhodopsin-like GPCR superfamily protein n=1 Tax=Ol... [more]
A0A1X1QMF3_9GAMM5.380e-2258.11SAM-dependent methyltransferase n=1 Tax=Cycloclast... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11033contigEcto-sp8_S_contig11033:5485..6610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score154.1
Seed ortholog evalue2.6e-35
Seed eggNOG ortholog2880.D8LGV5
Model size277
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.S-adenosylmethionine-dependent methyltransferase
EggNOG OGs2SNJA@2759,COG1092@1
Cds size225
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.3085394-UTR-Ecto-sp8_S_contig11033:5484..55361681143189.3085394-UTR-Ecto-sp8_S_contig11033:5484..5536Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11033 5485..5536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.3179138-CDS-Ecto-sp8_S_contig11033:5536..56511681143189.3179138-CDS-Ecto-sp8_S_contig11033:5536..5651Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11033 5537..5651 -
1681143189.3260527-CDS-Ecto-sp8_S_contig11033:6500..66101681143189.3260527-CDS-Ecto-sp8_S_contig11033:6500..6610Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11033 6501..6610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11033.1409.1prot_Ecto-sp8_S_contig11033.1409.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11033 5537..6610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11033.1409.1

>prot_Ecto-sp8_S_contig11033.1409.1 ID=prot_Ecto-sp8_S_contig11033.1409.1|Name=mRNA_Ecto-sp8_S_contig11033.1409.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=75bp
QTLFKPSLLATKEGGVVVATNHVSTVDCAEWVENLSKCAAKAGRTVDSVQ
VLLPEDDFPSPDGRHPLKVAIVHV*
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mRNA from alignment at Ecto-sp8_S_contig11033:5485..6610-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11033.1409.1 ID=mRNA_Ecto-sp8_S_contig11033.1409.1|Name=mRNA_Ecto-sp8_S_contig11033.1409.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1126bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11033:5485..6610- (Ectocarpus species8 EcLAC_412)
CAGACGCTGTTCAAGCCGTCGCTGCTAGCCACCAAGGAAGGGGGAGTCGT CGTTGCGACCAACCACGTGTCGACGGTGGACTGCGCGGAGTGGGTGGAGA ATCTTTCGAAGTGAGTGTGTTTCTGTCTTTGTGTGTGTGTGTGTGTGTGA GACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGA CAGACAGAGACAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGA GATAGAGATGGATACAGAGACTGAGAAAGAAAGCGCGAGGGGGAGAGAGA GAGAGATAGCGAGAGGGAGAGGGGGGGCGAGAGGGAGACAAAGAGAAGAG GGCGATTTTCACTATGTCCTCGCGAACAACACGTTGGAAGCGTGCAGGAA GTACGAGATGAATTCGAAGCGACCTTTTTTTCTTGGCGTTTTTATCCTGG ACCTTTCTCTTCTCGTGTTCCAAGTGTACTCGTGGGAGAAAAGGTATACC AAGTACTGGGTATGTGGTTTTCCCGTACTTTTGTGCCGGCATTTTTTGTG CTCGTTCTCGTTGTTTCTCTTCTTGTGGTTTCAGCCGTAACAATGCGAGA CTGCCGCTGAGATGACGAGCACGAGAGTCGCGTTCGCGCAACGATGAAGC GTTTGGTCCCAAGCGGCTCGCTGCACCCCGATTGGAGATAAAAAACCAAC CTTCAGATGCCAACATCTCCGCGGAAACATCACAGATCCCCTCCCCCCCC CCCCCGCAGAACAAATAGAGAAAGGCTTCGTACAGTAAGACAAGAAAATA TCGTCCGAGGTGTGGGCATCCAGAGTTGCGAGAGAAGCGGTGCTGCTCCG TCTCGAGCGAAAAAGGGATGAGCAATCAATGGTCGAAACAACGTGTTCAT TTGGTGAGCAACGTCACGGCAGCAGCCTCCGTCCGCCTCGTGTTCATTTT CCAACACAGGTGCGCCGCGAAAGCGGGTCGAACGGTGGATTCCGTCCAAG TCCTGCTCCCCGAGGATGACTTCCCCAGCCCGGATGGTAGACATCCGCTC AAGGTCGCCATCGTTCACGTTTGACGTGAATGAGAGGTGGGGGGGGCGTC ATAGCGATGTAGAACATCCACTCAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11033:5485..6610-

>mRNA_Ecto-sp8_S_contig11033.1409.1 ID=mRNA_Ecto-sp8_S_contig11033.1409.1|Name=mRNA_Ecto-sp8_S_contig11033.1409.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11033:5485..6610- (Ectocarpus species8 EcLAC_412)
CAGACGCTGTTCAAGCCGTCGCTGCTAGCCACCAAGGAAGGGGGAGTCGT
CGTTGCGACCAACCACGTGTCGACGGTGGACTGCGCGGAGTGGGTGGAGA
ATCTTTCGAAGTGCGCCGCGAAAGCGGGTCGAACGGTGGATTCCGTCCAA
GTCCTGCTCCCCGAGGATGACTTCCCCAGCCCGGATGGTAGACATCCGCT
CAAGGTCGCCATCGTTCACGTTTGA
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