mRNA_Ecto-sp8_S_contig11030.1407.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11030.1407.1
Unique NamemRNA_Ecto-sp8_S_contig11030.1407.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11030.1407.1 vs. uniprot
Match: D7FVP4_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP4_ECTSI)

HSP 1 Score: 519 bits (1336), Expect = 1.670e-183
Identity = 271/301 (90.03%), Postives = 276/301 (91.69%), Query Frame = 1 
Query:    1 MLLTVGGPLVSAHASLHPLLPSAGTLNPLRQHTGTSSITATGDCTRRQQTRPNSASSGPRLLHPRGTGPDGVPSSLFTFQPRTTPNKYPQQKKRAGGVSGSTSSAPVAGEENVLRAGLMDESDLPDVSALLVEVFEPGVVLADGEFTGLESVILGAPIDMTNNYMKAVAYNEILYSLRSRCGNRLTRGDFDRSSDALVLAVRGPPGTSGKSSSTPATQDGDADGXXXXXXXXGELVAVVELTIRKPDGSLPLNWPFPAPWRRE------------KPPEQWQPYMCNLAVAEEYRGNGYGK 867
            MLLTVGGPLVSA+A+LHPLL SAGTLNP  QHTGT+SITATGDCTRRQQTRPNSASSGPRLLHPRG+GPDGVPSSLFTFQPRTTP KYPQ+KKRAGG S STSSAPVAGEENVLRAGLMDESDLPDVSALLVEVFEPGVVLADGEFTGLESVILGAPIDMTNNYMKAVAYNEILYSLRSRCGNRLTRGDFDRSSDALVLAVRGPP TSGKSSSTP TQDGDADG   XXXX  ELVAVVELTIRKPDGSLPLNWPFPAPWRRE            KPPEQWQPYMCNLAVAEEYRGNGYGK
Sbjct:    1 MLLTVGGPLVSAYATLHPLLLSAGTLNPPGQHTGTTSITATGDCTRRQQTRPNSASSGPRLLHPRGSGPDGVPSSLFTFQPRTTPKKYPQEKKRAGGDSASTSSAPVAGEENVLRAGLMDESDLPDVSALLVEVFEPGVVLADGEFTGLESVILGAPIDMTNNYMKAVAYNEILYSLRSRCGNRLTRGDFDRSSDALVLAVRGPPSTSGKSSSTPVTQDGDADGGVGXXXXAAELVAVVELTIRKPDGSLPLNWPFPAPWRREARDLIVPLLYIEKPPEQWQPYMCNLAVAEEYRGNGYGK 301
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BLAST of mRNA_Ecto-sp8_S_contig11030.1407.1 vs. uniprot
Match: A0A6H5KVK2_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK2_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.620e-62
Identity = 146/341 (42.82%), Postives = 185/341 (54.25%), Query Frame = 1 
Query:    1 MLLTVGGPLV-SAHASLHPLLPSAGTLNP-----------LRQHTGTSSITATGDCTRRQQTRPNSASSGPRLLHPRGTGPDGVPSSLFTFQP-RTTPNKYPQQ----KKRAGGVSGST-----------SSAPVAGEENVLRAGLMDESDLPDVSALLVEVFEPGVVLADGEFTGLESVILGAPIDMTNNYMKAVAYN-----------------------EILYSLRSRCGNRLTRGDFDRSSDALVLAVRGP-PGTSGKSSSTPATQDGDADGXXXXXXXXGELVAVVELTIRKPDGSLPLNWPFPAPWRREKPPEQWQPYMCNLAVAEEYRGNGYGK 867
            MLL +GGPL+ S+HA+L+  +PS G L P            +Q  G+S              RP+SASSGPRLLHP G+GP+GVPSSLFTFQP R TP + P +        G  SGS            + A  + +E  L   L++ESDLPDVSALL EVFEP +++   E     SV     ++  N Y+K +AY                        +IL S++SRCG RLTRGDF  +SDALVLAVR   P  S +++S      GD  G        G++VAVVEL +R+PDG  P+N PF        P   W+PYMCNLAVAE+YRGNGYGK
Sbjct:    1 MLLNLGGPLLASSHAALYASVPSYGRLPPGVESAARMNAITQQRLGSSXXXXXXXXXXXXXXRPSSASSGPRLLHPSGSGPEGVPSSLFTFQPPRATPIERPTEVAPGTTEGGHNSGSEDGAGRSAAAVITKAVASADEEALHVKLVEESDLPDVSALLAEVFEPNILIDPAELRSESSV---ERLEKANKYLKEMAYKKVGGTHPREERECPLVVWSDTSCQILRSIKSRCGKRLTRGDFALTSDALVLAVRDSRPNGSARATSAVPELGGDGAGDAGGGDA-GDIVAVVELCLRQPDGWFPINGPF-------VPMTGWEPYMCNLAVAEKYRGNGYGK 330
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BLAST of mRNA_Ecto-sp8_S_contig11030.1407.1 vs. uniprot
Match: D7FVP3_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP3_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 2.670e-29
Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:  502 VAYNEILYSLRSRCGNRLTRGDFDRSSDALVLAVRG--PPGTSGKSSSTPATQ-DGDADGXXXXXXXXGELVAVVELTIRKPDGSLPLNWPFPAPWRREKPPEQWQPYMCNLAVAEEYRGNGYGK 867
            +AY +IL S++SRCG RLTRGDF  +SDALVLAVR   P G++  +S+ P    DG  DG        G++VAVVEL +R+PDG LP+N PF        P   W+PYMCNLAV E+YRGNGYGK
Sbjct:    1 MAYKKILRSIKSRCGKRLTRGDFALTSDALVLAVRDSRPNGSARATSAVPELGGDGAGDGGGGDA---GDIVAVVELCLRQPDGWLPINGPF-------VPMTGWEPYMCNLAVTEKYRGNGYGK 115
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BLAST of mRNA_Ecto-sp8_S_contig11030.1407.1 vs. uniprot
Match: A0A836CNC1_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNC1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.010e-21
Identity = 59/182 (32.42%), Postives = 88/182 (48.35%), Query Frame = 1 
Query:  325 GEENVLRAGLMDESDLPDVSALLVEVFEPGVVLA-DGEFTGLESVILGAPIDMTNNYMKAVAYNEILYSLRSRCGNRLTRGDFDRSSDALVLAVRGPPGTSGKSSSTPATQDGDADGXXXXXXXXGELVAVVELTIRKPDGSLPLNWPFPAPWRREKPPEQWQPYMCNLAVAEEYRGNGYGK 867
            G E  L  GL+++ D+   + LLV  F   V L+ +  F   E  +L  P+ + N Y++  +Y EIL  ++ R G +L     D S  A++L V  P                             +++AVVEL +R PDG+LP NWP P   + +      +PY+CNLAV+E +RG G GK
Sbjct:   22 GSERNLVLGLIEDRDVAQAAELLVNCFPFEVSLSTEAGFKEWEVQVLRIPVGLMNAYLRGFSYYEILLGIKLRMGEQLLNPQIDASGSAMILGVADP--------------------------STNQIIAVVELELRIPDGTLPGNWPLPRFIKGQSAESHSEPYLCNLAVSERWRGQGIGK 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11030.1407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FVP4_ECTSI1.670e-18390.03N-acetyltransferase domain-containing protein n=2 ... [more]
A0A6H5KVK2_9PHAE1.620e-6242.82N-acetyltransferase domain-containing protein n=1 ... [more]
D7FVP3_ECTSI2.670e-2954.40N-acetyltransferase domain-containing protein n=1 ... [more]
A0A836CNC1_9STRA3.010e-2132.42N-acetyltransferase domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11030contigEcto-sp8_S_contig11030:3..2881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score524.6
Seed ortholog evalue2.9e-146
Seed eggNOG ortholog2880.D7FVP4
Model size867
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Acetyltransferase (GNAT) family
EggNOG OGs2CZCN@1,2S9Q8@2759
Cds size867
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.1826994-CDS-Ecto-sp8_S_contig11030:2..801681143189.1826994-CDS-Ecto-sp8_S_contig11030:2..80Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11030 3..80 -
1681143189.190962-CDS-Ecto-sp8_S_contig11030:874..11471681143189.190962-CDS-Ecto-sp8_S_contig11030:874..1147Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11030 875..1147 -
1681143189.1982422-CDS-Ecto-sp8_S_contig11030:1886..20031681143189.1982422-CDS-Ecto-sp8_S_contig11030:1886..2003Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11030 1887..2003 -
1681143189.2057526-CDS-Ecto-sp8_S_contig11030:2482..28811681143189.2057526-CDS-Ecto-sp8_S_contig11030:2482..2881Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11030 2483..2881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11030.1407.1prot_Ecto-sp8_S_contig11030.1407.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11030 3..2881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11030.1407.1

>prot_Ecto-sp8_S_contig11030.1407.1 ID=prot_Ecto-sp8_S_contig11030.1407.1|Name=mRNA_Ecto-sp8_S_contig11030.1407.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=289bp
MLLTVGGPLVSAHASLHPLLPSAGTLNPLRQHTGTSSITATGDCTRRQQT
RPNSASSGPRLLHPRGTGPDGVPSSLFTFQPRTTPNKYPQQKKRAGGVSG
STSSAPVAGEENVLRAGLMDESDLPDVSALLVEVFEPGVVLADGEFTGLE
SVILGAPIDMTNNYMKAVAYNEILYSLRSRCGNRLTRGDFDRSSDALVLA
VRGPPGTSGKSSSTPATQDGDADGGVGGGGGAGELVAVVELTIRKPDGSL
PLNWPFPAPWRREKPPEQWQPYMCNLAVAEEYRGNGYGK
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mRNA from alignment at Ecto-sp8_S_contig11030:3..2881-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11030.1407.1 ID=mRNA_Ecto-sp8_S_contig11030.1407.1|Name=mRNA_Ecto-sp8_S_contig11030.1407.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2879bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11030:3..2881- (Ectocarpus species8 EcLAC_412)
ATGTTGCTGACCGTGGGAGGGCCTCTGGTCTCCGCACACGCTTCACTGCA
CCCGTTGCTGCCTAGCGCAGGCACCCTAAACCCCCTTCGGCAGCACACCG
GTACCAGCAGCATCACCGCTACTGGCGATTGCACCAGACGGCAACAAACG
CGCCCGAACTCAGCATCCTCGGGGCCTCGACTGCTGCATCCCAGGGGTAC
CGGTCCCGATGGTGTACCATCTTCTCTCTTCACGTTCCAGCCGAGAACGA
CGCCCAATAAATACCCACAGCAGAAGAAGAGAGCTGGCGGAGTCTCTGGT
TCGACCTCCTCTGCTCCTGTTGCTGGAGAGGAAAATGTGCTGCGTGCTGG
CTTGATGGACGAATCGGACCTTCCGGACGTGTCAGCTCTCCTTGTAGAGG
TACGGCTAAATAGCAGAGGTTCGCTCTTTCGACCTCGGGTTTTGCGTTCC
TCGTTGTACGTGGCAGCCGCTTACATAGATCAGCTTCTGCGGACACACTC
TACGGCTGTGAGTACAGTCTACTGCTCTGTCAGGACGCCCATGGCACCAG
CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCGAGATGAAGAACAGCA
ACAGTAGCAACAGCGTTCCCTGCCATTTGGTGTGAAGCAGAACCACAAAG
TATACGGTATTGCGTGCTGTTTAGAAACCTTTGCTTCCGGCGGCAACAGC
AGGCGTTCCGTTAAAGTTGCACATGCGCGCAAGTACGCACAAATCCATCC
CCACACCCCTGGAACTACGGCAGTGCGCGTCAGGCGGCGCCACGTGATGG
TGATCGCACCGCCTCTCTGGGAGCACCATCCATCATCGCGCCTTTGCTCA
CATTGCGGCGCGTTCCACGCCGAATCAGGTGTTCGAGCCAGGAGTCGTCC
TCGCGGACGGCGAGTTCACCGGACTAGAGAGCGTCATTCTTGGGGCACCG
ATTGACATGACGAACAACTACATGAAAGCAGTGGCTTACAACGAGGTGTG
TTAACTTGCTGGGAAGGGCTCGGGGAACAAAAACAGTAGGGCCTGGTAGC
GGAGAACCTGCCCACTGAAACATTTTTGTGCCTCGACAGGGAACGCATCG
AGGGTGCACAAGGGCGAGGTGCTATGCCGCTCCCGGTACCAACGAAACGG
TGGCCTATTTTCTAGGCGCTGAGCGCAAAAGCTGAGCACTACTACTATAG
ATGTGTCTGGATTCGTCAGCTCTCTACCGAGCGCATGGGTGTTCATGTGA
CCTGCTTACCACCCACTCTGTGCACCAACTATAATGCACAGCCTTTGCGA
AAGGTGAAACGATAGCAACTACAGCAGCGCGGCGCGGTTCAGGTGTTGTT
GCACGTAAGTCCAGCATCAAGACCCGTACACCTAGCTAGCCGTCCTCTAT
CCTATGTACTTACGCCGGCGAGCACCGAGGGCGACTCTTGCCTGTCAAAT
CAAGTAGATCCCCCCCACTCTGGATTGATTTCACAGGGTCCGCGCCATGC
TCTGTTGTTAACGGCTCTGCTGTCAAATCACGTAGACCCCCCCCCACTCT
GGATTGCTTTCTCAGGGCCCGCGCGATGCTCTGTTGTTAACATCATTGGA
AAAAGCTCCATGTAAATGTGTTGAATCGCCTGCGACCAAGTATTTCGAAA
GGGTCACTCGCACACTCTCACCAGCGCGCCTCTTGCTCGTGTTCTCCTTT
TTTTATTTCCATGCCGCTCGACACACAACCCCAGATACTGTACTCATTGA
GGTCGCGATGTGGGAACCGCCTGACGCGCGGGGACTTCGACCGCAGCAGC
GATGCCCTCGTCCTAGCCGTGCGGGGCCCACCCGGTACCAGCGGGAAGTC
ATCATCGACGCCCGCCACGCAGGACGGCGACGCCGATGGTGGAGTTGGTG
GTGGCGGTGGCGCCGGAGAACTGGTGGCGGTGGTAGAACTGACGATACGG
AAGCCGGACGGTTCGCTACCGTTGAACTGGCCCTTCCCTGCACCTTGGCG
AAGAGAGGTACGTTATATTATGAGTGGGAACGGTCTTCTCGGCGGGACGT
ATGGTGCTGATACGTTTTTTTTTCTGGTGTTTGAATGGTAACGGCACGAC
AAGTGAACGAGGAGTGGCGGGGGGTAATTCTGGCTGCAATCCGCGATTTC
TGTCGAAGAGAAATTGACGCCCAGGCACCAGCACCGCTGTCGAGCGAGAG
GTAATCGATCCTTCTCTGAGCGTAAACATGGTACATGTAGCATGTTGCAG
CGCTTCTACGTAGTAACGTACGCTGCATGTGCTGTAAGTGATAATCGCAT
CGTGAAATGGAACGCTCTTGACGTAGTGTACGAGATCTCAAGGCACGGAA
TCTCATCGTGTCATTGCTCTATTCAGAGCTAAGCAAACTACTAGCTATTC
CCAGACCTTCCTCCCGTTCCAGTGTGATTTTGCCGGATCGCCTTCAGGCC
GTTTGCATGTAGCGGGGGTTCAGTGTTCAAACTGTCTTACGCATGGCTAC
TTCGCGTTGGCTCAGTCTGGTGGCCATCGCCATGTAGAGCATAAATTTGT
GTTCTTTGTAACGATTGGTTGTATTCTGCGTATTTGATCCCTTACTAGAT
TTGTTAGCCTGCGAAGACGGAGATTGATGTCAGACCGGGAGTGATTCGTG
CCAAAGACTTAGAGATTGAGGTAGGGGTGTTTTTTGTCGCAAAGACATCA
ATGCCATCAACAAAAAGCTTGTGACTTCAGGAATCGGTGCAGCACGGGCC
TGAATGACGTGAGCTTGCCCTTCGCACCCGTTTCTTTTTTGTTTTTTTCA
GAAGCCACCCGAGCAATGGCAGCCGTACATGTGCAACCTAGCTGTTGCGG
AGGAGTACCGAGGGAACGGGTACGGAAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11030:3..2881-

>mRNA_Ecto-sp8_S_contig11030.1407.1 ID=mRNA_Ecto-sp8_S_contig11030.1407.1|Name=mRNA_Ecto-sp8_S_contig11030.1407.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=867bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11030:3..2881- (Ectocarpus species8 EcLAC_412)
ATGTTGCTGACCGTGGGAGGGCCTCTGGTCTCCGCACACGCTTCACTGCA
CCCGTTGCTGCCTAGCGCAGGCACCCTAAACCCCCTTCGGCAGCACACCG
GTACCAGCAGCATCACCGCTACTGGCGATTGCACCAGACGGCAACAAACG
CGCCCGAACTCAGCATCCTCGGGGCCTCGACTGCTGCATCCCAGGGGTAC
CGGTCCCGATGGTGTACCATCTTCTCTCTTCACGTTCCAGCCGAGAACGA
CGCCCAATAAATACCCACAGCAGAAGAAGAGAGCTGGCGGAGTCTCTGGT
TCGACCTCCTCTGCTCCTGTTGCTGGAGAGGAAAATGTGCTGCGTGCTGG
CTTGATGGACGAATCGGACCTTCCGGACGTGTCAGCTCTCCTTGTAGAGG
TGTTCGAGCCAGGAGTCGTCCTCGCGGACGGCGAGTTCACCGGACTAGAG
AGCGTCATTCTTGGGGCACCGATTGACATGACGAACAACTACATGAAAGC
AGTGGCTTACAACGAGATACTGTACTCATTGAGGTCGCGATGTGGGAACC
GCCTGACGCGCGGGGACTTCGACCGCAGCAGCGATGCCCTCGTCCTAGCC
GTGCGGGGCCCACCCGGTACCAGCGGGAAGTCATCATCGACGCCCGCCAC
GCAGGACGGCGACGCCGATGGTGGAGTTGGTGGTGGCGGTGGCGCCGGAG
AACTGGTGGCGGTGGTAGAACTGACGATACGGAAGCCGGACGGTTCGCTA
CCGTTGAACTGGCCCTTCCCTGCACCTTGGCGAAGAGAGAAGCCACCCGA
GCAATGGCAGCCGTACATGTGCAACCTAGCTGTTGCGGAGGAGTACCGAG
GGAACGGGTACGGAAAG
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