mRNA_Ecto-sp8_S_contig1103.1406.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1103.1406.1
Unique NamemRNA_Ecto-sp8_S_contig1103.1406.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1103.1406.1 vs. uniprot
Match: D8LDM3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM3_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 9.150e-41
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:  235 TVVEFKMRGCIHPGCTKRPSFGARDAKNNKPEYCTVHKKEGMVNVYTSTKXXXXXXXXXXXXXXAIGSGVKVVCPEHAADDMVPIGTVT 501
            TVVEFKMRGCIHPGCTKRPSFGARDAKNNKPEYCTVHKKEGMVNVYTSTKXXXXXXXXXXXXXX  GSGVKVVC EHAAD+MVPIGTVT
Sbjct:    3 TVVEFKMRGCIHPGCTKRPSFGARDAKNNKPEYCTVHKKEGMVNVYTSTKXXXXXXXXXXXXXXXAGSGVKVVCAEHAADNMVPIGTVT 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1103.1406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDM3_ECTSI9.150e-4195.51EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1103contigEcto-sp8_S_contig1103:1584..2141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size558
Hectar predicted targeting categoryother localisation
Exons1
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.1514056-CDS-Ecto-sp8_S_contig1103:1583..21411681143189.1514056-CDS-Ecto-sp8_S_contig1103:1583..2141Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1103 1584..2141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1103.1406.1prot_Ecto-sp8_S_contig1103.1406.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1103 1584..2141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1103.1406.1

>prot_Ecto-sp8_S_contig1103.1406.1 ID=prot_Ecto-sp8_S_contig1103.1406.1|Name=mRNA_Ecto-sp8_S_contig1103.1406.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=186bp
MVDVCSKRCVHPGCTTRPSFNFEGGRAGIFCKSHAREGMVCIRSRTCSQQ
GCKRKPTQGLVGSSKAEFCREHETGGMVTVVEFKMRGCIHPGCTKRPSFG
ARDAKNNKPEYCTVHKKEGMVNVYTSTKGCAHPGCSKRPSYGAIGSGVKV
VCPEHAADDMVPIGTVTCGHSGCTTSPSYGAEGTKK
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mRNA from alignment at Ecto-sp8_S_contig1103:1584..2141+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1103.1406.1 ID=mRNA_Ecto-sp8_S_contig1103.1406.1|Name=mRNA_Ecto-sp8_S_contig1103.1406.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1103:1584..2141+ (Ectocarpus species8 EcLAC_412)
ATGGTGGACGTTTGCAGCAAGAGGTGCGTCCACCCAGGGTGCACCACAAG
GCCGAGCTTCAACTTTGAAGGGGGGCGCGCAGGTATTTTTTGCAAGTCCC
ATGCGAGGGAGGGGATGGTCTGCATCCGCAGCCGAACATGTTCACAACAA
GGGTGCAAAAGAAAGCCGACCCAAGGGCTTGTCGGTTCAAGCAAGGCGGA
GTTCTGCCGAGAGCACGAAACGGGTGGGATGGTGACCGTGGTGGAGTTCA
AGATGAGGGGGTGCATCCACCCCGGTTGCACCAAGAGGCCATCATTCGGC
GCTAGAGATGCCAAGAACAACAAGCCCGAGTACTGCACTGTTCACAAGAA
GGAGGGAATGGTCAACGTCTACACCTCGACCAAGGGGTGCGCTCATCCAG
GCTGCAGCAAACGGCCCTCATACGGTGCCATAGGAAGCGGCGTGAAGGTG
GTCTGTCCGGAACACGCTGCAGACGACATGGTCCCCATCGGTACGGTGAC
GTGCGGCCATTCAGGCTGCACGACGTCGCCGTCGTACGGGGCTGAGGGCA
CCAAGAAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1103:1584..2141+

>mRNA_Ecto-sp8_S_contig1103.1406.1 ID=mRNA_Ecto-sp8_S_contig1103.1406.1|Name=mRNA_Ecto-sp8_S_contig1103.1406.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1103:1584..2141+ (Ectocarpus species8 EcLAC_412)
ATGGTGGACGTTTGCAGCAAGAGGTGCGTCCACCCAGGGTGCACCACAAG
GCCGAGCTTCAACTTTGAAGGGGGGCGCGCAGGTATTTTTTGCAAGTCCC
ATGCGAGGGAGGGGATGGTCTGCATCCGCAGCCGAACATGTTCACAACAA
GGGTGCAAAAGAAAGCCGACCCAAGGGCTTGTCGGTTCAAGCAAGGCGGA
GTTCTGCCGAGAGCACGAAACGGGTGGGATGGTGACCGTGGTGGAGTTCA
AGATGAGGGGGTGCATCCACCCCGGTTGCACCAAGAGGCCATCATTCGGC
GCTAGAGATGCCAAGAACAACAAGCCCGAGTACTGCACTGTTCACAAGAA
GGAGGGAATGGTCAACGTCTACACCTCGACCAAGGGGTGCGCTCATCCAG
GCTGCAGCAAACGGCCCTCATACGGTGCCATAGGAAGCGGCGTGAAGGTG
GTCTGTCCGGAACACGCTGCAGACGACATGGTCCCCATCGGTACGGTGAC
GTGCGGCCATTCAGGCTGCACGACGTCGCCGTCGTACGGGGCTGAGGGCA
CCAAGAAA
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