mRNA_Ecto-sp8_S_contig11028.1403.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: D7FKB2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB2_ECTSI) HSP 1 Score: 213 bits (543), Expect = 1.330e-65 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query: 34 QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 345
QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM
Sbjct: 28 QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 131
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A835YZL3_9STRA (Proteasome maturation factor UMP1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZL3_9STRA) HSP 1 Score: 135 bits (340), Expect = 2.340e-35 Identity = 61/105 (58.10%), Postives = 84/105 (80.00%), Query Frame = 1
Query: 31 RQDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 345
+Q+A HP+EA+ ++R+ EF+ KMD+A +VYGS F MR++TE A LSQAQ LPGL SS +GLETVLG DET++FED++ P ++P P+F+VHEAMEI+YGL+
Sbjct: 24 QQEAQDTHPVEAIQRSRVRGEFELKMDMAQRVYGSGFAMRLRTEAAALSQAQRLPGLLSSRVGLETVLGNDETLDFEDFMGTPENQPGEPKFKVHEAMEIKYGLL 128
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: W7TNF3_9STRA (Proteasome maturation factor ump1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNF3_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.230e-24 Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 31 RQDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 342
R +A A HP++A R EF ++D ++YG A MR+KTE LS+ PGLPSSM+GLETVLG DET+EFED L+ P +RP+ P VHE ME + GL
Sbjct: 29 RSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A8K1CUT3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUT3_PYTOL) HSP 1 Score: 94.4 bits (233), Expect = 7.250e-20 Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 34 QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 342
+D HP++ + N+F+ KM +VYG A MR++TE A + Q LPGLPSS +GL+TV G DE + F D+L+ P + PE FRVHEAME++ +
Sbjct: 25 EDVRPVHPVQQLQTMHRRNQFELKMATVEQVYGKAAAMRLRTEKAVMEQFGRLPGLPSSRIGLDTVTGADEELNFSDFLNDPNEHPEH-NFRVHEAMEVKLSI 126
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A1V9YHV6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YHV6_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.610e-18 Identity = 43/109 (39.45%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 19 GWHTR-QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 342
GW + QD+ A H ++ + + F+ KM+ ++YG A MR++TE L Q +PGLPSS +GL+T+LG D+ ++F D L+ P++ PE FRVH+AME++ +
Sbjct: 19 GWQSAAQDSRAVHEVQRLEMHQRLRGFEGKMNTVEQIYGKAAAMRLRTEKILLEQHVRMPGLPSSHVGLDTILGNDDVIDFTDVLNEPSENPEA-TFRVHDAMEVKLAI 126
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A067CYH8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYH8_SAPPC) HSP 1 Score: 90.1 bits (222), Expect = 2.610e-18 Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 1
Query: 19 GWHTR-QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 342
GW QDA H ++ + R + F+ KM+ ++YG A MR++TE L Q LPGLPSS +GL+T++G D+T++F D L+ P + PE FRVH+AME++ +
Sbjct: 19 GWQRADQDARPVHEVQRLEMHRRVHGFEAKMNSVEQIYGKAAAMRLRTEKIMLEQHVRLPGLPSSRVGLDTLMGNDDTLDFADILNEPQENPEV-HFRVHDAMEVKLAI 126
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A6U4HD01_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HD01_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 4.020e-18 Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1
Query: 52 HPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 345
HP+E + R +E K+D+ +YG+ M +KTEV S LPGL S +GL+TVL D V FED L RPE P+F++H AMEI++GL+
Sbjct: 34 HPVEEFQQIRASSELAGKVDMVRSIYGTGAAMGLKTEVQAFSADTRLPGLAQSRVGLDTVLNNDVKVGFEDVLGQEEHRPEPPKFQLHNAMEIKFGLL 131
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A7S2S4B2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4B2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.390e-17 Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 1
Query: 49 GHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 342
GHPLE ++F K+D+ ++YGSA MR++TE Q Q LPGLPSS L L+TVLG D T++FED L+ P + P + +H+ +E ++GL
Sbjct: 32 GHPLETRLAV---DDFSQKVDMVRRMYGSAAAMRLQTERLATEQIQRLPGLPSSFLALQTVLGEDCTLQFEDVLNDPFEAPVETKASLHDELEFKFGL 126
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A7R9YBV5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBV5_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.770e-17 Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 1
Query: 52 HPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 345
HP+E I + D K+ ++G M +K E+ SQ LPGLPSS + L+T+L DE + FED L DRP+ P+F++H AMEI++G++
Sbjct: 33 HPVEEFQMNGITRQLDEKIKTVRMLHGIGAAMDLKAEIVACSQPTRLPGLPSSNVALDTLLNNDEKIRFEDVLGREEDRPDAPKFKLHSAMEIKFGML 130
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A7S4MDZ2_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MDZ2_9EUKA) HSP 1 Score: 87.4 bits (215), Expect = 6.700e-17 Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 1
Query: 40 ASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM*MMP-FALGE 372
A + HP+E + + + N + K + G++YG M+++ E LSQAQ LPGLP+S LGLET+LGRDET+EFEDYL P R ME + GL P FA GE
Sbjct: 35 APSAHPVEDIQRNWLRNSIETKHFMLGQMYGKHLPMQLRMETQILSQAQRLPGLPNSNLGLETILGRDETIEFEDYLGDP--RMSEHTVDTRAVMEKRLGLEVRSPIFAGGE 144 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig11028.1403.1 >prot_Ecto-sp8_S_contig11028.1403.1 ID=prot_Ecto-sp8_S_contig11028.1403.1|Name=mRNA_Ecto-sp8_S_contig11028.1403.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=94bp MNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLback to top mRNA from alignment at Ecto-sp8_S_contig11028:3890..5411- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig11028.1403.1 ID=mRNA_Ecto-sp8_S_contig11028.1403.1|Name=mRNA_Ecto-sp8_S_contig11028.1403.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1522bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11028:3890..5411- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11028:3890..5411- >mRNA_Ecto-sp8_S_contig11028.1403.1 ID=mRNA_Ecto-sp8_S_contig11028.1403.1|Name=mRNA_Ecto-sp8_S_contig11028.1403.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11028:3890..5411- (Ectocarpus species8 EcLAC_412)back to top |