mRNA_Ecto-sp8_S_contig11028.1403.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11028.1403.1
Unique NamemRNA_Ecto-sp8_S_contig11028.1403.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: D7FKB2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB2_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.330e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:   34 QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 345
            QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM
Sbjct:   28 QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 131          
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A835YZL3_9STRA (Proteasome maturation factor UMP1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZL3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.340e-35
Identity = 61/105 (58.10%), Postives = 84/105 (80.00%), Query Frame = 1
Query:   31 RQDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 345
            +Q+A   HP+EA+ ++R+  EF+ KMD+A +VYGS F MR++TE A LSQAQ LPGL SS +GLETVLG DET++FED++  P ++P  P+F+VHEAMEI+YGL+
Sbjct:   24 QQEAQDTHPVEAIQRSRVRGEFELKMDMAQRVYGSGFAMRLRTEAAALSQAQRLPGLLSSRVGLETVLGNDETLDFEDFMGTPENQPGEPKFKVHEAMEIKYGLL 128          
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: W7TNF3_9STRA (Proteasome maturation factor ump1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNF3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.230e-24
Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   31 RQDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 342
            R +A A HP++A    R   EF  ++D   ++YG A  MR+KTE   LS+    PGLPSSM+GLETVLG DET+EFED L+ P +RP+ P   VHE ME + GL
Sbjct:   29 RSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132          
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A8K1CUT3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUT3_PYTOL)

HSP 1 Score: 94.4 bits (233), Expect = 7.250e-20
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   34 QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 342
            +D    HP++ +      N+F+ KM    +VYG A  MR++TE A + Q   LPGLPSS +GL+TV G DE + F D+L+ P + PE   FRVHEAME++  +
Sbjct:   25 EDVRPVHPVQQLQTMHRRNQFELKMATVEQVYGKAAAMRLRTEKAVMEQFGRLPGLPSSRIGLDTVTGADEELNFSDFLNDPNEHPEH-NFRVHEAMEVKLSI 126          
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A1V9YHV6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YHV6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.610e-18
Identity = 43/109 (39.45%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   19 GWHTR-QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 342
            GW +  QD+ A H ++ +   +    F+ KM+   ++YG A  MR++TE   L Q   +PGLPSS +GL+T+LG D+ ++F D L+ P++ PE   FRVH+AME++  +
Sbjct:   19 GWQSAAQDSRAVHEVQRLEMHQRLRGFEGKMNTVEQIYGKAAAMRLRTEKILLEQHVRMPGLPSSHVGLDTILGNDDVIDFTDVLNEPSENPEA-TFRVHDAMEVKLAI 126          
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A067CYH8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYH8_SAPPC)

HSP 1 Score: 90.1 bits (222), Expect = 2.610e-18
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   19 GWHTR-QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 342
            GW    QDA   H ++ +   R  + F+ KM+   ++YG A  MR++TE   L Q   LPGLPSS +GL+T++G D+T++F D L+ P + PE   FRVH+AME++  +
Sbjct:   19 GWQRADQDARPVHEVQRLEMHRRVHGFEAKMNSVEQIYGKAAAMRLRTEKIMLEQHVRLPGLPSSRVGLDTLMGNDDTLDFADILNEPQENPEV-HFRVHDAMEVKLAI 126          
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A6U4HD01_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HD01_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.020e-18
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   52 HPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 345
            HP+E   + R  +E   K+D+   +YG+   M +KTEV   S    LPGL  S +GL+TVL  D  V FED L     RPE P+F++H AMEI++GL+
Sbjct:   34 HPVEEFQQIRASSELAGKVDMVRSIYGTGAAMGLKTEVQAFSADTRLPGLAQSRVGLDTVLNNDVKVGFEDVLGQEEHRPEPPKFQLHNAMEIKFGLL 131          
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A7S2S4B2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4B2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.390e-17
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   49 GHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 342
            GHPLE        ++F  K+D+  ++YGSA  MR++TE     Q Q LPGLPSS L L+TVLG D T++FED L+ P + P   +  +H+ +E ++GL
Sbjct:   32 GHPLETRLAV---DDFSQKVDMVRRMYGSAAAMRLQTERLATEQIQRLPGLPSSFLALQTVLGEDCTLQFEDVLNDPFEAPVETKASLHDELEFKFGL 126          
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A7R9YBV5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBV5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.770e-17
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   52 HPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 345
            HP+E      I  + D K+     ++G    M +K E+   SQ   LPGLPSS + L+T+L  DE + FED L    DRP+ P+F++H AMEI++G++
Sbjct:   33 HPVEEFQMNGITRQLDEKIKTVRMLHGIGAAMDLKAEIVACSQPTRLPGLPSSNVALDTLLNNDEKIRFEDVLGREEDRPDAPKFKLHSAMEIKFGML 130          
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Match: A0A7S4MDZ2_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MDZ2_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 6.700e-17
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   40 ASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM*MMP-FALGE 372
            A + HP+E + +  + N  + K  + G++YG    M+++ E   LSQAQ LPGLP+S LGLET+LGRDET+EFEDYL  P  R           ME + GL    P FA GE
Sbjct:   35 APSAHPVEDIQRNWLRNSIETKHFMLGQMYGKHLPMQLRMETQILSQAQRLPGLPNSNLGLETILGRDETIEFEDYLGDP--RMSEHTVDTRAVMEKRLGLEVRSPIFAGGE 144          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11028.1403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKB2_ECTSI1.330e-65100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZL3_9STRA2.340e-3558.10Proteasome maturation factor UMP1 n=1 Tax=Tribonem... [more]
W7TNF3_9STRA2.230e-2450.96Proteasome maturation factor ump1 family protein n... [more]
A0A8K1CUT3_PYTOL7.250e-2043.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YHV6_9STRA2.610e-1839.45Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067CYH8_SAPPC2.610e-1841.28Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6U4HD01_9STRA4.020e-1843.88Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2S4B2_9STRA3.390e-1743.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9YBV5_9STRA3.770e-1739.80Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4MDZ2_9EUKA6.700e-1744.64Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11028contigEcto-sp8_S_contig11028:3890..5411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score192.2
Seed ortholog evalue1.1e-46
Seed eggNOG ortholog2880.D7FKB2
Model size1144
KEGG koko:K11599
KEGG Pathwayko03050,map03050
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001541,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005851,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007548,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009987,GO:0010001,GO:0010467,GO:0014003,GO:0016043,GO:0019538,GO:0021782,GO:0022008,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042063,GO:0042552,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048608,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051716,GO:0061458,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.proteasome assembly
EggNOG OGsKOG3061@1,KOG3061@2759
Ec32 ortholog descriptionProteasome maturation factor UMP1
Ec32 orthologEc-05_005550.1
Cds size282
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.0396833-UTR-Ecto-sp8_S_contig11028:3889..46851681143189.0396833-UTR-Ecto-sp8_S_contig11028:3889..4685Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11028 3890..4685 -
1681143189.0643241-UTR-Ecto-sp8_S_contig11028:5345..54111681143189.0643241-UTR-Ecto-sp8_S_contig11028:5345..5411Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11028 5346..5411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.049757-CDS-Ecto-sp8_S_contig11028:4685..48531681143189.049757-CDS-Ecto-sp8_S_contig11028:4685..4853Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11028 4686..4853 -
1681143189.0567853-CDS-Ecto-sp8_S_contig11028:5231..53451681143189.0567853-CDS-Ecto-sp8_S_contig11028:5231..5345Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11028 5232..5345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11028.1403.1prot_Ecto-sp8_S_contig11028.1403.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11028 4686..5345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11028.1403.1

>prot_Ecto-sp8_S_contig11028.1403.1 ID=prot_Ecto-sp8_S_contig11028.1403.1|Name=mRNA_Ecto-sp8_S_contig11028.1403.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=94bp
MNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSML
GLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM*
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mRNA from alignment at Ecto-sp8_S_contig11028:3890..5411-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11028.1403.1 ID=mRNA_Ecto-sp8_S_contig11028.1403.1|Name=mRNA_Ecto-sp8_S_contig11028.1403.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1522bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11028:3890..5411- (Ectocarpus species8 EcLAC_412)
GATTCTGAACCATTTCCGGGTTGGCACACACGACAGGACGCATCTGCGGG ACACCCGTTGGAGGCGATGAACAAGGCAAGGATCCCTAACGAGTTTGACT TCAAGATGGACCTCGCTGGCAAGGTTTACGGTAGCGCTTTCGTAATGCGG ATGAAGACCGAGGTGGCTACGCTCTCCCAGGTGACTTGGACTTGCAGCTG CTTTCTATGGCACGGCGGCGGTGGAGTAATTTGGACATTTCGGTAGCAAA GGAAGTGAAACAGATCGCATGCCCCCCACCCCCCGTTCATTTTGAACGCC TTTTGGATAATTCCATGTCTGCGATGAACGTCGCTTTCCTGACATGGTTT CGTAAGGAGTTTCCATGACGAGGGCAAGTCAAGAGAAAGAGAAACAAATT GTAAGTCAGGTAGTTCCTGTGGGAAACGTCGTGCTCGTTCCTTCCAAATC CTGCTCAGACAAATAATTTCCCACGCTAGAGAAAAATTCTACAATACCCC GACAGTGCCCCTAATGCTCACGCGCCCTCTCGTTTTTTGCTCTTCCCGTC CGTACCAGGCACAACACCTCCCCGGCCTGCCGTCCTCCATGCTGGGGCTG GAGACCGTGCTCGGCCGGGACGAGACGGTGGAGTTCGAGGACTACCTCGA CCCGCCCGCGGACCGGCCCGAGGGCCCGCGGTTCCGCGTCCACGAGGCCA TGGAGATCCAGTACGGCCTCATGTAGATGATGCCTTTTGCTCTTGGAGAA GGGCAGGAAAAAGTCACAGGGGCGGCGAGAACGGGAGGGACACGCGCGAG CACGCTTCTCACGTTCGAGACGCCGTTTTGCCACCAGGCAGGCGAACAAT CTTGATCGGATCCATCCGCGAACGTGGCTGCGGCGGCGGCCTCAAGCCGG CGCTCTTCTTGCTCTGGGGCTCTTGACTGCTGTACATTACGTTTCCTCGT AATAGCGTGTAGAGGTATATATAGTGATTTTGTTTTGGGGGAGTTTTTGA CGGCTCTCTTGCGTCGTCTCTTCCTTGGCTGTTAGTGCGGGGCAGGGAAG AACCTCGTGGCTCAAGAAGAAGCCGACGCTGGCATTTATCAATAATCAAA AGCACGGCTGAAAAAGCACGGCTGAGTTACGAAATGCCAAAATTTTGCCA TGTCAACGAGAGAACACGGTTGCTTACCGTCGTTACGCCCTTTGAACTCT GTTGAGCCTTTCTTGCGCTACATGCTGTTCGACACGTTCTCTCTTCGTAT GGTGGATATTCCTTCGCGCAAATTCGGCCGGACTTTGGCCATCACGACAT GAGGAGACATATGTAGAAGTCCAACCGCAGAGGACGCAGTGGTTTACGGC AGTTACGTTTCCGTTCGTTTGGGACGTGAAGACATGATCCTTCACGCGTT GCTGTTGTCAATTGAAGGTAGGCGTCTGCAAGAAGATAAACTGCTGTTCT GTGCGATAAACTCCGTGACATCACGTCGCGGTCATCATCGCCTTGGTGGT TTCAAATTTTTCTCTCCCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11028:3890..5411-

>mRNA_Ecto-sp8_S_contig11028.1403.1 ID=mRNA_Ecto-sp8_S_contig11028.1403.1|Name=mRNA_Ecto-sp8_S_contig11028.1403.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11028:3890..5411- (Ectocarpus species8 EcLAC_412)
ATGAACAAGGCAAGGATCCCTAACGAGTTTGACTTCAAGATGGACCTCGC
TGGCAAGGTTTACGGTAGCGCTTTCGTAATGCGGATGAAGACCGAGGTGG
CTACGCTCTCCCAGGCACAACACCTCCCCGGCCTGCCGTCCTCCATGCTG
GGGCTGGAGACCGTGCTCGGCCGGGACGAGACGGTGGAGTTCGAGGACTA
CCTCGACCCGCCCGCGGACCGGCCCGAGGGCCCGCGGTTCCGCGTCCACG
AGGCCATGGAGATCCAGTACGGCCTCATGTAG
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