mRNA_Ecto-sp8_S_contig11027.1401.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11027.1401.1
Unique NamemRNA_Ecto-sp8_S_contig11027.1401.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Match: A0A6H5L249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L249_9PHAE)

HSP 1 Score: 713 bits (1841), Expect = 1.120e-252
Identity = 407/548 (74.27%), Postives = 422/548 (77.01%), Query Frame = 1 
Query:   55 MSVILVVGSPGSGKTTLVQALVDSLPRCSNAEQQQQPVSPAGNEGQPEASPPAVMVMPDSQVLLEQANAKFDVFPASITTKYYNAQISFWRQAQAAVPVLALRSAEKLEGLEGIIVVFDLRQESSFDEAAQWAALVEDREECAFRVCVGSKLDLLTEDPGAGTGFGTGAETAPEPAKSGLEGGDAAAA--------EGLQERRERCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMAAVATAAVGGS---SAAGDGGNVGGTGSVSXXXXXXXXXXXXXXXXXXXDGGHEASEHLDGFVDVDGEGGEYAGYGALDSGDEEEGGDVDDQAEGEGSRGEGXXXXGVEEXXXXXXXXGGDGVVVDPSHIELQARWEQQDHSSXXXXXXXXXXXXXXXXXXXXXXXQAARSCNDQQGAAAPGRDTAPSHDGGKNNAEILLSKPRDSASSTPADGTTAPGGSCAGQXXXXXXXXXSCRGAXXXXXXEGTGDGEAASKESEEYLLEAAGSMVGGIGGDLEGDEVRVL 1665
            MSVILVVGSPGSGKT LVQALVDSLPRCSNAEQQQ PVSPAGNEGQ EASPPAVMVMPDSQVLLEQANAKFDVFPASITTKYYNAQISFWRQAQAAVP+LALRSAE+LEGLEGIIV+FDLRQES FDEA+QWAAL+EDREECAFRVCVGSKLDLL +DPG G GFGTGAET  EPA+SGLEG DAA          EGL+ERR RCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWT MEFLSSNRPSLMAAVATAAVGGS    A GD        SVS                   DGGHE SE+L GFVDVD EGG+YAGYGALDSGDEEEGGD D Q  GE SRG      GVEE        GGDGVVVDPSHIELQARWEQQDHSS                       Q+ RSCNDQQGAAAP RDTAPSHDG K NAE+  SKP DSA++TP  GTTAPGGSCAGQ         SCR A      EGTGDGEAASKESEEYLLEAAGSMVGGIGGDLEGDE+  L
Sbjct:    1 MSVILVVGSPGSGKTALVQALVDSLPRCSNAEQQQHPVSPAGNEGQQEASPPAVMVMPDSQVLLEQANAKFDVFPASITTKYYNAQISFWRQAQAAVPILALRSAEQLEGLEGIIVLFDLRQESGFDEASQWAALMEDREECAFRVCVGSKLDLLPQDPGDGAGFGTGAETTLEPAESGLEG-DAAXXXXXXXXXXEGLRERRRRCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTDMEFLSSNRPSLMAAVATAAVGGSRNDGAVGDVXXXXXXXSVSESSGGEDGTAAALSSTAGADGGHEVSEYLHGFVDVDDEGGKYAGYGALDSGDEEEGGDGDGQVAGEWSRG------GVEEGGAGAPREGGDGVVVDPSHIELQARWEQQDHSSSSLPDAGDATNAATAALPSEQ--QSGRSCNDQQGAAAPERDTAPSHDGRKKNAEMFPSKPGDSAANTPTGGTTAPGGSCAGQSDGGNGEGGSCRRAGAAAAGEGTGDGEAASKESEEYLLEAAGSMVGGIGGDLEGDEMEQL 539
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BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Match: D7FHG9_ECTSI (IRC6, uncharacterized protein interacting with AP adaptor complexes n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG9_ECTSI)

HSP 1 Score: 610 bits (1572), Expect = 4.950e-213
Identity = 373/456 (81.80%), Postives = 378/456 (82.89%), Query Frame = 1 
Query:  313 ISFWRQAQAAVPVLALRSAEKLEGLEGIIVVFDLRQESSFDEAAQWAALVEDREECAFRVCVGSKLDLLTEDPGAGTGFGTGAETAPEPAKSGLEGGDAAAAEGLQERRERCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMAAVATAAVGGS---SAAGDGGNVGGTGSVSXXXXXXXXXXXXXXXXXXXDGGHEASEHLDGFVDVDGEGGEYAGYGALDSGDEEEGGD--VDDQAEGEGSRGEGXXXXGVEEXXXXXXXXGGDGVVVDPSHIELQARWEQQDHSSXXXXXXXXXXXXXXXXXXXXXXXQAARSCNDQQGAAAPGRDTAPSHDGGKNNAEILLSKPRDSASSTPADGTTAPGGSCAGQXXXXXXXXXSCRGAXXXXXXEGTGDGEAASKESEEYLLEAAGSMVGGIGGDLEGDEVRVL 1665
            ISFWRQAQAAVPVLALRSAE+LEGLEGIIVVFDLRQESS DE AQWAALVEDREECAFRVCVGSKLDLL EDPG GTGFGTGAETAPEPA+SGLEGGDAAAAEGLQERR RCLGWCLDHGFEYVEADCRDS TGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMAAVATAA GGS    AAGDGGNVGGTGSVS   XXXXXXX      XXX GGHEASE+LDGFVDVD EGGEYAGYGALDSGDEEEGGD                XXXX VEE        G  GVVVDPSHIELQARWEQQDHSS                       QAARSCNDQQGAAAPGRDTAPSHDGGKNNAEIL SKP DS +STPADGTTAPGGSCAGQ XXXXXXXXSCRGAXXXXXXEGTGDGEAASKESEEYLLEAAGSMVGGIGGDLEGDE+  L
Sbjct:    7 ISFWRQAQAAVPVLALRSAEQLEGLEGIIVVFDLRQESSLDEVAQWAALVEDREECAFRVCVGSKLDLLPEDPGDGTGFGTGAETAPEPAESGLEGGDAAAAEGLQERRSRCLGWCLDHGFEYVEADCRDSYTGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMAAVATAAAGGSRNDGAAGDGGNVGGTGSVSGSSXXXXXXXAALSFAXXXXGGHEASEYLDGFVDVDDEGGEYAGYGALDSGDEEEGGDGXXXXXXXXXXXXXXXXXXXXVEEGGAGAPREGRGGVVVDPSHIELQARWEQQDHSSSSSPGAGDATNAAAADTALPSEEQAARSCNDQQGAAAPGRDTAPSHDGGKNNAEILPSKPGDSVASTPADGTTAPGGSCAGQSXXXXXXXXSCRGAXXXXXXEGTGDGEAASKESEEYLLEAAGSMVGGIGGDLEGDEMERL 462
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BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Match: A0A835Z725_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z725_9STRA)

HSP 1 Score: 124 bits (310), Expect = 8.110e-27
Identity = 72/191 (37.70%), Postives = 102/191 (53.40%), Query Frame = 1 
Query:  238 VLLEQANAKFDVFPASITTKYYNAQISFWRQAQAAVPVL-------ALRSAEKLEGLEGIIVVFDLRQESSFDEAAQWAALVEDREECAFRVCVGSKLDLLTEDPGAGTGFGTGAETAPEPAKSGLEGGDAAA-AEGLQERRERCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTGM 786
            VLLE A A+F      + TKYY+ QI FW Q +  +P +       A+ +A    G+EGII VFD+ Q+ +F+   +W    ++R+  A R+ V SK   L +                      L+  D  A  + ++ RRE  + WCLDHGFEY+EA+C   + GG+ REKEGVPR+VEALQS  W  +
Sbjct:   22 VLLEAAGARFAQHAWPLHTKYYSTQIRFWEQRE--LPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHLRK----------------------LQMADLFADGDEMERRREVYIHWCLDHGFEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASI 188
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BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Match: A0A7S0VVT7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VVT7_9CRYP)

HSP 1 Score: 75.5 bits (184), Expect = 1.380e-12
Identity = 49/168 (29.17%), Postives = 78/168 (46.43%), Query Frame = 1 
Query:  286 ITTKYYNAQISFWRQAQAAVPVLALRSAEKLEGLEGIIVVFDLRQESSFDEAAQWAALVEDREECAFRVCVGSKLDLLTEDPGAGTGFGTGAETAPEPAKSGLEGGDAAAAEGLQERRERCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTGME 789
            + TKY++A +       AA P   +         EG+++VFD+  ++SF+   +W A + D  + A  +CV +K D+                              AA   G+ ERR+  + WCLD G E VE    +    GE R+ EG+ R++EAL S+ W+GM+
Sbjct:    6 VRTKYFSAAVV---PKVAASPNHLVADDVDFGDCEGLVLVFDMCDDTSFERLKEWDAFL-DEVDPAVALCVANKADV------------------------------AATLPGMDERRDTWISWCLDKGLELVECSALNDEVRGE-RDAEGLERVIEALGSHTWSGMK 138
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BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Match: A0A5P1EY81_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EY81_ASPOF)

HSP 1 Score: 65.1 bits (157), Expect = 4.800e-8
Identity = 54/196 (27.55%), Postives = 90/196 (45.92%), Query Frame = 1 
Query:  283 SITTKYYNAQISFWRQ------AQAAVPVLALRSAEKLEGLEGIIVVFDLRQESSFDEAAQWAALVEDREECAFRVCVGSKLDLLT------------EDPGAGTGFGTGAETAPEPAKSGLEGGDAAAAEGLQER----RERCLGWCLDHGFEYVEADCRDSN------TGGELREKEGVPRIVEALQSNVWTGM 786
            +I TKYY+A IS W        +  A+P+           L G+++VFD+  ESSF     W A + D E+    +C+G+K DL+             +  G  T     ++  P+    G++  +  +  G +E     R+  L WC+ H  EYVEA   +++        G+++   GV R+  AL +++W GM
Sbjct:   56 TIQTKYYSADISIWTADLNKDFSFGALPIS--------NDLAGLVMVFDMSDESSFIALKDWVASI-DLEKFEILLCIGNKADLVPGHTAHVEYRRYLQKRGEST-----SDPHPDFWDYGIDEDEGCSLLGEEESSMEIRQSWLEWCIQHNIEYVEACASNADFDKCLSVDGDIQ---GVQRLYGALSAHMWPGM 234
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BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Match: A0A7S2S1P7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S1P7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.250e-7
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  655 WCLDHGFEYVEADCRDS--NTGGELREKEGVPRIVEALQSNVWT 780
            WCLD G+EYVEAD  +   +TG ++REK+G PRI+EA+Q  VW+
Sbjct:   12 WCLDRGYEYVEADLSEKGQSTGHDVREKDGFPRIIEAIQGTVWS 55
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BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Match: A0A507CFC3_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CFC3_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 1.260e-6
Identity = 46/177 (25.99%), Postives = 71/177 (40.11%), Query Frame = 1 
Query:  277 PASITTKYYNAQISFWRQAQAAVPVLALRSAEKLEGLEGIIVVFDLRQESSFDEAAQWAALVEDREECAFRVCVGSKLDLLTEDPGAGTGFGTGAETAPEPAKSGLEGGDAAAAEGLQERRERCLGWCLDHGFEYVE----ADCRDSNTGGE---LREKEGVPRIVEALQSNVWTGM 786
            P ++ T+YY AQ S W  +                 ++ +I VFD  + ++F     W+  +   +     +CV   +D   +                    SGL+                C  WC+D GFE+V+    A   D+  GG     REK G PRI+EAL+SN+W G+
Sbjct:   61 PYTLDTRYYTAQTSLWVASTDTAANDISHWNVVAPAIDAVIYVFDRAEPTTFTHIHPWSDFLSSHDP-NVSLCVAHSMDDRQDS------------------SSGLDA---------------CEDWCIDLGFEFVDVCASATSEDAGDGGNSDAAREKFGFPRIIEALESNMWDGL 203
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BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Match: A0A0D2MZC2_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MZC2_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.590e-6
Identity = 44/141 (31.21%), Postives = 62/141 (43.97%), Query Frame = 1 
Query:  373 KLEGLEGIIVVFDLRQESSFDEAAQWAALVEDREECAFRVCVGSKLDLLTEDPGAGTGFGTGAETAPEPAKSGLEGGDAAAAEGLQERRERCLGWCLDHGFEYVEADCRDSNTGGELR---EKEGVPRIVEALQSNVWTGM 786
            +L G E +I+V D    S+F  A +WAA V D      R+ + +K D        G+G                    AA  E          GWCLD GFEYVEA          L    +++GV R++EALQ+++W G+
Sbjct:  105 ELCGAEAVILVCDATNPSTFAAARRWAAAV-DSSGAGVRLLIANKADAAPRAAAGGSG--------------------AALPE--------AAGWCLDEGFEYVEAAAGAPAADAALALDGDRQGVVRVLEALQAHMWPGL 216
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BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Match: A0A7S2K1K1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1K1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.180e-6
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  655 WCLDHGFEYVEADCRDSNT----GGELREKEGVPRIVEALQSNVWT 780
            WCLDHGFEY+EA C  S+T    G ++REKEG  R+VEA+ S +WT
Sbjct:   60 WCLDHGFEYIEA-CNLSDTSVLVGHDVREKEGFARVVEAIGSTIWT 104
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BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Match: A0A7S1D022_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D022_CYCTE)

HSP 1 Score: 58.5 bits (140), Expect = 1.260e-5
Identity = 44/146 (30.14%), Postives = 63/146 (43.15%), Query Frame = 1 
Query:  388 EGIIVVFD-------LRQESSFDEAAQWAALVEDREECA--FRVCVGSKLDLLTEDPGAGTGFGTGAETAPEPAKSGLEGGDAAAAEGLQERRERCLGWCLDHGFEYVEADCRDS--NTGGELREKEGVPRIVEALQSNVWTGMEF 792
            +GII+VFD       L   S+FD      A  E  ++C    R+CVG  +  L+     G                             ++   R + WCLDHG+EYVEAD  D   + G + R+K+G  RIVEA+   VW+  + 
Sbjct:   69 DGIILVFDSLKSNPDLSDVSAFDGLTDAHASAETLDQCGDLLRLCVGVHIGELSPTELRGKKH--------------------------EDEYSRRVLWCLDHGYEYVEADLSDEGRHKGHDERDKDGYARIVEAIAGTVWSSAKM 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11027.1401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L249_9PHAE1.120e-25274.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHG9_ECTSI4.950e-21381.80IRC6, uncharacterized protein interacting with AP ... [more]
A0A835Z725_9STRA8.110e-2737.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0VVT7_9CRYP1.380e-1229.17Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A5P1EY81_ASPOF4.800e-827.55Uncharacterized protein n=1 Tax=Asparagus officina... [more]
A0A7S2S1P7_9STRA6.250e-756.82Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A507CFC3_9FUNG1.260e-625.99Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A0D2MZC2_9CHLO1.590e-631.21Uncharacterized protein (Fragment) n=1 Tax=Monorap... [more]
A0A7S2K1K1_9STRA6.180e-658.70Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S1D022_CYCTE1.260e-530.14Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11027contigEcto-sp8_S_contig11027:251..6079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score78.6
Seed ortholog evalue1e-11
Seed eggNOG ortholog4641.GSMUA_Achr4P29710_001
Model size1665
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006914,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022411,GO:0022607,GO:0030139,GO:0031410,GO:0031982,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0036010,GO:0036257,GO:0036258,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0044085,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048308,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061709,GO:0061912,GO:0061919,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098657,GO:1903008
Exons9
EggNOG free text desc.Alpha and gamma adaptin binding protein p34
EggNOG OGs37NND@33090,3G9M5@35493,3KTDY@4447,KOG4273@1,KOG4273@2759
Ec32 ortholog descriptionIRC6, uncharacterised protein interacting with AP adaptor complexes
Ec32 orthologEc-25_002450.1
Cds size1665
COG Functional cat.J
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11027.1401.1prot_Ecto-sp8_S_contig11027.1401.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11027 251..6079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143188.8948612-CDS-Ecto-sp8_S_contig11027:250..3621681143188.8948612-CDS-Ecto-sp8_S_contig11027:250..362Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11027 251..362 +
1681143188.9036317-CDS-Ecto-sp8_S_contig11027:636..7571681143188.9036317-CDS-Ecto-sp8_S_contig11027:636..757Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11027 637..757 +
1681143188.9108112-CDS-Ecto-sp8_S_contig11027:1130..12091681143188.9108112-CDS-Ecto-sp8_S_contig11027:1130..1209Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11027 1131..1209 +
1681143188.9178238-CDS-Ecto-sp8_S_contig11027:2137..22451681143188.9178238-CDS-Ecto-sp8_S_contig11027:2137..2245Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11027 2138..2245 +
1681143188.9249468-CDS-Ecto-sp8_S_contig11027:2772..28591681143188.9249468-CDS-Ecto-sp8_S_contig11027:2772..2859Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11027 2773..2859 +
1681143188.932041-CDS-Ecto-sp8_S_contig11027:3111..33161681143188.932041-CDS-Ecto-sp8_S_contig11027:3111..3316Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11027 3112..3316 +
1681143188.9393554-CDS-Ecto-sp8_S_contig11027:3872..41351681143188.9393554-CDS-Ecto-sp8_S_contig11027:3872..4135Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11027 3873..4135 +
1681143188.946371-CDS-Ecto-sp8_S_contig11027:4652..48801681143188.946371-CDS-Ecto-sp8_S_contig11027:4652..4880Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11027 4653..4880 +
1681143188.953605-CDS-Ecto-sp8_S_contig11027:5617..60791681143188.953605-CDS-Ecto-sp8_S_contig11027:5617..6079Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11027 5618..6079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11027.1401.1

>prot_Ecto-sp8_S_contig11027.1401.1 ID=prot_Ecto-sp8_S_contig11027.1401.1|Name=mRNA_Ecto-sp8_S_contig11027.1401.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=555bp
HTHRERARESERETQRERMSVILVVGSPGSGKTTLVQALVDSLPRCSNAE
QQQQPVSPAGNEGQPEASPPAVMVMPDSQVLLEQANAKFDVFPASITTKY
YNAQISFWRQAQAAVPVLALRSAEKLEGLEGIIVVFDLRQESSFDEAAQW
AALVEDREECAFRVCVGSKLDLLTEDPGAGTGFGTGAETAPEPAKSGLEG
GDAAAAEGLQERRERCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRI
VEALQSNVWTGMEFLSSNRPSLMAAVATAAVGGSSAAGDGGNVGGTGSVS
GSSGGEDGTAAALSSTAGADGGHEASEHLDGFVDVDGEGGEYAGYGALDS
GDEEEGGDVDDQAEGEGSRGEGGGGGGVEEGGAGAPREGGDGVVVDPSHI
ELQARWEQQDHSSSSSPDAGDATNAAAAAAALPSEEQAARSCNDQQGAAA
PGRDTAPSHDGGKNNAEILLSKPRDSASSTPADGTTAPGGSCAGQSDGGN
GEGGSCRGAGAAAAGEGTGDGEAASKESEEYLLEAAGSMVGGIGGDLEGD
EVRVL
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mRNA from alignment at Ecto-sp8_S_contig11027:251..6079+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11027.1401.1 ID=mRNA_Ecto-sp8_S_contig11027.1401.1|Name=mRNA_Ecto-sp8_S_contig11027.1401.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5829bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11027:251..6079+ (Ectocarpus species8 EcLAC_412)
CACACACACCGGGAGAGAGCGAGAGAGAGCGAGAGAGAGACTCAGAGAGA
GAGAATGTCGGTGATACTGGTGGTAGGATCGCCAGGCTCTGGGAAGACGA
CCCTAGTTCAAGGTCAGTGGGTTTTCCTTTTTCCTCCGTACTCCGTGTTG
ACTGATTTGAAAATGTCGGTTCCGCCGCACTCCTGCCACTGCCGGCCACG
CGCTGTCCTCAGCCGTACTATGTGGTATGTGCTACTTCTCGGCGTGTGAA
GCCTAGAGAACAAAGCCATTGCCGTTGCCATGGCGGTACTACGAACAACG
TAAGTTAATGCTTGCTGCGGCATCGTGTGTTGGCGACTGTCTGCTTGTCC
GTCCGTGCACCCCCCCCCGTATGGCTTTCTGACCAGCTCTGGTAGACTCC
CTACCACGATGCAGCAACGCGGAACAGCAGCAGCAGCCTGTTTCCCCAGC
AGGAAATGAAGGCCAACCGGAAGCCTCGCCGCCAGCGGTGATGGTGATGC
CAGACAGGTGAATGTGCAAATAGGAACACGACAGCCATCTTTGAGCCTTC
TCGGGGTTCACTGAGTGTACCGCTGTGCCGGCGTCCTGCAGGGGCTGTGG
CTGCATGCCGCGATCTGCGGTTGCCATATTGTACTACTGCTGTACTGCGT
ACTGCGTCTCTAAACTACACGATGCATGAGTGTTTAACTCCGGGTGGGGT
CAGGACCACTATAGCAGTTGCACACACGTAGAGAACGCGTGTATTTTCCG
CTTGCAGTTGCTGCTGGCTCTGGCAACATTGCTCGTACAAGAGATAACGG
TCCCGCGCGTAACCATCCGCATATTGGATGCCCCGCCGTCGACCGTGCGT
CCTGCCTGGTGTTCGTAAAACCAATTTCAGCCAAGTATTACTGGAACAGG
CAAACGCAAAGTTCGACGTGTTCCCGGCCTCCATCACGACCAAGTACTAC
AACGCGCAGGTAAGAACCGTAGTGTAGCGGGGGCGGGGGCCAAGGCGCAC
AGTGGCTCTCTAGCATTCTCAGGCCGCTCACATTCACGGTACGGGTTTCT
TAGTGGTGATGTTCTGACTGTTGAGGTTTTTCACAGGATTTTTGAACTTC
TCCTTCTTTTACCCCTTCCTCCTACAATACGTATATGTGATGATGACATA
TTCGTGGACTCCGAAACATCGAATACTTTGTCTCGCAATTCCGTTTCCCT
GGGGCATGTATGCACGCGAAAAGAAAAAGTGTGTAAGCGACGGACAAGAA
ATGCTGCTGTAGCAGTCAGGCAGCCAACCCCTTGCTGTGCATGCATCCGT
CCAAGTCACAAATGAACGCTCGGCTTGCGAATCGAATCCTCCACGGGAAC
CACATGCGTATGTGCGTGCTCCATGCGTACCATAAAAAGCGTTCGTGTTG
TCGCACACCTCCTAGGCCGACCTTCAAAGTTCGATGGCTCCCTCTTCCAG
TTGCCCCAACACCGAAAAAAGGCAATGGCTTCGGAAACATCTCGTGGAGA
GCCATCCCTCGCACGTATCGGTTCTGTTTTCGCGCCCTCTTCGTTGTGGA
GCAATATGAGCGTTGGCAGTCGTCGGGTCTAGGGGGCGGCGTGGGATGAC
CCGGAGCCTGACGGTACGCACACTCCCAGGACGACGCGTAATAACCCACG
ATGACCGGCGACTACGCACCGTGGTGTTCATCCAGCGTGTGCTCCGCACA
CGTGCATTTTTCGCCGTAAAATGAAAGCATCGTCATCGTAAATATTGTGT
TTTAGCCTTGGACGAACCGCACCAAGGATAACCGGAGCGGGTTCTCGTTG
GTATTTTGCGGGGGGGCAGGGATTTCTCAAGCAAGAGCAGTGTCTTGAGC
TTGTCCAAAACGGTGCTGTTCTTTTTTCTTGAGACAGATTAGCTTCTGGC
GGCAGGCGCAAGCAGCTGTGCCCGTCCTGGCGTTACGATCCGCGGAGAAG
CTTGAGGGGCTGGAAGGCATAATCGTAGTCTTCGACCTACGACAGGTGCT
GTGTAGCCAACAGGTTAACGAGCGTAGGCAAGCCGTATCGAATTTGTTGG
TCGGTTTCTGGCGCCAGCTTCCACATTGAGGAAGCTATCTTCAATGGAAG
TTGATAAAGATCAATTGAAGCCGTCTTCTCCATGCCGTGTGTGCTAACTG
CCATGCGCTCTGTTCTGTAGGCACCGGCTGGGAACCCAACTAGATTGGGG
TTGTTTTTGGAGGTGCACGTAGTCATTGTCCTCCACCAACGTCCGTGCCT
GTGGGAGTGTGGCTTGCGGTGACTCCTGCTGACAGAGTCTGAGACATGGT
GTAGAAACGAGGCGGCGGATTGAAAGAGGGCAAGCTTATTGCTTGCATCA
CACCAGTTTCTCGGTTGAAGCAGGGGGTATCCCAACAGCCCCCGCCACCA
TTCCTCCTGACTCGTTATCCTTGGAGCGAGACGCTCTCCTCCGCACACCC
ACCCTGCCTTCAAAATCTTACTTGTCTTCTTGGGTTGTCATCGCTCGTTC
CCCCCGCCTCCGCCTATTCCAGGAATCTAGTTTTGACGAGGCGGCTCAGT
GGGCAGCTCTCGTGGAAGATAGGGAGGAATGCGCCTTTCGAGTTTGCGTG
GGAAGCAAGGTATCCTAAATGCTCCGGCTGTGGCCTTTGCCACGGCCAGA
AAAAACTTGTTTCGCCTTCTTTTTCATCTCGTGCTGTCTGCGTTGAGAAA
TTGACGGCGACTGTTCCGAGTTTGCATGTTTGTGGCGTTGTACCGCTACC
GTCCAGGGCGCGAAGTACGGCACAGCAACCGATAACCATTTCCTGCCGCT
TCTATCCCCCGACTTTGCCTGGCATTGACCTTACCGGGTGCCATCGCCGG
GGCTACTGCAGCTCGATTTGTTGACGGAAGACCCAGGAGCCGGTACCGGC
TTTGGGACAGGGGCCGAAACCGCTCCGGAGCCTGCGAAGAGCGGCTTGGA
AGGTGGCGATGCTGCTGCTGCTGAGGGCTTGCAGGAAAGACGGGAACGTT
GCCTGGGGTGGTGTCTAGACCACGGCTTCGAGTACGTGGAGGCTGACTGC
AGGGACTCCAACACAGGTATAACACCGTCTTTGTCAAAGCGTGCGGTCGG
ATTGCGTCCAAGAGGGGGAGGGGGGAGGCATGTGGTGTCCTTTTTTGTTT
TCTCCTTCCACGTCCGAACAGGGGCGCGGGTGGGGTGGAGGTGTTGGGGA
GAAAGGGGCCTCAGCAGCAGTTTGCGGTAGCTCCCGTTGTCAACGAACGG
AACGCATGCAGACACGAGACCTGTGTGCTTGTGTTTTGCCCCGAGATACT
TTGGCTACAACGCATTTTCCTTTTTGCTTTACCGGCGGGTTTCCTAGCGT
CAAGGTATTGGCTATTTTGTTATTCTCGTCGTTTGGTCATGCTGGAGGGT
ACCACCGTAAGGATACAATCGCATCCTATGGGAATCGTGTTGTAGACCCG
TGCTAGGAGTTACACCTGAAGGACTTGTTTTCGACGAGAGATACACCAGG
TCTAATTGCCACGAAATCGATTGCTGAAGTGCGCCGCCGACCTGACCCCA
ACTCGTTTTTTTGTCGGTCACTGATGTAACGATGGCCGTCGTGGGTACGC
TGCCATCCCCACCCCCGAATAGGCGGAGAGCTAAGAGAGAAGGAAGGCGT
CCCTCGCATCGTGGAGGCTCTTCAGTCCAACGTTTGGACGGGCATGGAGT
TCCTTTCGAGCAATCGCCCCTCTCTGATGGCAGCGGTAGCAACGGCAGCA
GTAGGGGGCTCTAGCGCCGCCGGCGACGGCGGCAACGTCGGCGGAACCGG
TTCTGTGTCGGGGTCAAGCGGCGGAGAGGATGGAACCGCCGCAGCCTTGT
CTTCTACGGCTGGTGCGGATGGAGGGCATGAGGCGGTGAGTGTTCGATGT
TTCTTTCTTTGCCGTGGCCCTCTAAGCAGCCTTCTTCCTGTTTTTGCGGT
GGTGGAGGTTTTACGTCCGCGATCGAATCGTGCAGTTTCTCTTGCTGTGC
AAGTACACGCTTAGTGCATTTTACGGACACGTTTGAGTGCCGCTTTCGCT
GAGGCGAATATCCGACTGGATGAGCACGGCAAAGTTTGTTCCAAGTTCGT
GCGCCCCCCCCCCCGGTGTTGACGGGATGCGAGGTCTATGGTCTGCGGCA
CGCGTTTCCATGAGTACGCGGCGTGCTTTACTTGGTCCACCTGGCGTAAA
ACAAATAGCGGATTGATTCAGACACCGCTCACGAGTGGCGTAGCTCCCCC
GTGCCCCTCAACACATTTCACGCCTTGAAGACGGGCCCGACTGGTTCACA
TGCCATTTCTCGCGTGCTGCGAGCTGGCTCACGGTTACCTCAGCTCACCG
TCCCCCTCCCTCCGCTGGCTCGCGGTCACCGCTGGTGGGACTAAACGTCC
AGAGCGAGCACCTCGACGGCTTCGTAGACGTCGATGGCGAGGGCGGGGAG
TACGCCGGGTACGGTGCCCTGGACAGTGGGGACGAAGAAGAGGGCGGTGA
TGTCGATGACCAGGCAGAAGGAGAGGGGTCAAGAGGAGAAGGAGGAGGAG
GAGGAGGTGTCGAGGAGGGAGGTGCGGGGGCTCCGCGAGAGGGAGGGGAC
GGGGTCGTTGTTGACCCCTCCCATATCGAGGTTAGTGCCCGATTTCGCAC
GCGCGGTTAGATGAGTGGTAGCTGTGCTTCTTGGCGCGGGTGTCGCTTCC
TCTGGACGTCCTAGTGTGTTTCTAATAGTTGTCATCGGGCTTGCCAATTC
ATCGGCTGACCAATGAAAAGACGCCAGCCTGATGTTTTGCGGGATGAAAA
ACGCGAACACGCCTTCTAGTCGACGGGATCCTCCGGCGGGGGGGAGGGGG
GCAGAGGAGTTGAACGATAGGGTGCAGTCGGAGACATCGTTGTTGTCCTG
GTTAGTTAGATCGACCGTAGGAGAGGTCAGTGGGTATCTCTTCTCCCGGC
CCGGACTATCTATCTATGTATGCATAGCTCCACAATATTCATGTTTTTCA
TGTTTTGTTGATAAGTAGAGAGCAAATCTCCCACACAGACAGCAGGACGC
TTGCCTTTGTTCGGAGTCTGGCCTTGTTGGCAAATCTTCCGCCAAAAGAA
ATAACGAAATCCCGCGAACACGCGTCTTGCCGTGAACCGCATGATGCTCT
GCTCACGATGCGTTGTCTCGCGATTGGATCGCGATTCACGTTCGTTGTTT
TTGAACGTGCGATTTTGTTTTGGAGTTCTAACGTAGACATGCGCAATGCA
CACGCGTGCACCAGGTCCACCGAACCGATGGTTAGATGACAAGTATTACC
CACACCCCACCACCAACAGCAACCAACCGCAGCGCCCCCCCCCGCCCCTC
CCCTTGTTTTGGAGCAGCTGCAGGCGCGGTGGGAACAACAAGACCACTCC
AGCTCGTCGTCGCCGGATGCCGGTGACGCCACCAACGCCGCCGCCGCCGC
CGCCGCTCTCCCGTCAGAAGAACAGGCGGCACGTAGTTGCAACGACCAGC
AGGGTGCGGCGGCACCCGGGCGAGACACGGCCCCCTCGCATGACGGAGGG
AAAAATAACGCCGAAATTTTGCTGTCGAAACCCAGGGACAGCGCGTCGAG
CACGCCTGCTGACGGTACTACCGCCCCCGGGGGGTCCTGCGCGGGGCAGA
GCGACGGCGGTAACGGCGAGGGCGGGAGCTGTAGAGGGGCTGGCGCCGCG
GCGGCAGGGGAGGGGACAGGGGACGGGGAGGCAGCCTCGAAGGAGTCGGA
GGAGTACCTGCTTGAGGCTGCGGGGTCGATGGTGGGGGGGATTGGGGGCG
ATTTGGAGGGGGACGAGGTGAGGGTTTTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11027:251..6079+

>mRNA_Ecto-sp8_S_contig11027.1401.1 ID=mRNA_Ecto-sp8_S_contig11027.1401.1|Name=mRNA_Ecto-sp8_S_contig11027.1401.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1665bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11027:251..6079+ (Ectocarpus species8 EcLAC_412)
CACACACACCGGGAGAGAGCGAGAGAGAGCGAGAGAGAGACTCAGAGAGA
GAGAATGTCGGTGATACTGGTGGTAGGATCGCCAGGCTCTGGGAAGACGA
CCCTAGTTCAAGCTCTGGTAGACTCCCTACCACGATGCAGCAACGCGGAA
CAGCAGCAGCAGCCTGTTTCCCCAGCAGGAAATGAAGGCCAACCGGAAGC
CTCGCCGCCAGCGGTGATGGTGATGCCAGACAGCCAAGTATTACTGGAAC
AGGCAAACGCAAAGTTCGACGTGTTCCCGGCCTCCATCACGACCAAGTAC
TACAACGCGCAGATTAGCTTCTGGCGGCAGGCGCAAGCAGCTGTGCCCGT
CCTGGCGTTACGATCCGCGGAGAAGCTTGAGGGGCTGGAAGGCATAATCG
TAGTCTTCGACCTACGACAGGAATCTAGTTTTGACGAGGCGGCTCAGTGG
GCAGCTCTCGTGGAAGATAGGGAGGAATGCGCCTTTCGAGTTTGCGTGGG
AAGCAAGCTCGATTTGTTGACGGAAGACCCAGGAGCCGGTACCGGCTTTG
GGACAGGGGCCGAAACCGCTCCGGAGCCTGCGAAGAGCGGCTTGGAAGGT
GGCGATGCTGCTGCTGCTGAGGGCTTGCAGGAAAGACGGGAACGTTGCCT
GGGGTGGTGTCTAGACCACGGCTTCGAGTACGTGGAGGCTGACTGCAGGG
ACTCCAACACAGGCGGAGAGCTAAGAGAGAAGGAAGGCGTCCCTCGCATC
GTGGAGGCTCTTCAGTCCAACGTTTGGACGGGCATGGAGTTCCTTTCGAG
CAATCGCCCCTCTCTGATGGCAGCGGTAGCAACGGCAGCAGTAGGGGGCT
CTAGCGCCGCCGGCGACGGCGGCAACGTCGGCGGAACCGGTTCTGTGTCG
GGGTCAAGCGGCGGAGAGGATGGAACCGCCGCAGCCTTGTCTTCTACGGC
TGGTGCGGATGGAGGGCATGAGGCGAGCGAGCACCTCGACGGCTTCGTAG
ACGTCGATGGCGAGGGCGGGGAGTACGCCGGGTACGGTGCCCTGGACAGT
GGGGACGAAGAAGAGGGCGGTGATGTCGATGACCAGGCAGAAGGAGAGGG
GTCAAGAGGAGAAGGAGGAGGAGGAGGAGGTGTCGAGGAGGGAGGTGCGG
GGGCTCCGCGAGAGGGAGGGGACGGGGTCGTTGTTGACCCCTCCCATATC
GAGCTGCAGGCGCGGTGGGAACAACAAGACCACTCCAGCTCGTCGTCGCC
GGATGCCGGTGACGCCACCAACGCCGCCGCCGCCGCCGCCGCTCTCCCGT
CAGAAGAACAGGCGGCACGTAGTTGCAACGACCAGCAGGGTGCGGCGGCA
CCCGGGCGAGACACGGCCCCCTCGCATGACGGAGGGAAAAATAACGCCGA
AATTTTGCTGTCGAAACCCAGGGACAGCGCGTCGAGCACGCCTGCTGACG
GTACTACCGCCCCCGGGGGGTCCTGCGCGGGGCAGAGCGACGGCGGTAAC
GGCGAGGGCGGGAGCTGTAGAGGGGCTGGCGCCGCGGCGGCAGGGGAGGG
GACAGGGGACGGGGAGGCAGCCTCGAAGGAGTCGGAGGAGTACCTGCTTG
AGGCTGCGGGGTCGATGGTGGGGGGGATTGGGGGCGATTTGGAGGGGGAC
GAGGTGAGGGTTTTG
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