mRNA_Ecto-sp8_S_contig11026.1400.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11026.1400.1
Unique NamemRNA_Ecto-sp8_S_contig11026.1400.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11026.1400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11026contigEcto-sp8_S_contig11026:1701..3099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size396
Hectar predicted targeting categoryother localisation
Exons2
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143188.8518069-CDS-Ecto-sp8_S_contig11026:1700..19881681143188.8518069-CDS-Ecto-sp8_S_contig11026:1700..1988Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11026 1701..1988 -
1681143188.8612769-CDS-Ecto-sp8_S_contig11026:2991..30991681143188.8612769-CDS-Ecto-sp8_S_contig11026:2991..3099Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11026 2992..3099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11026.1400.1prot_Ecto-sp8_S_contig11026.1400.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11026 1701..3099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11026.1400.1

>prot_Ecto-sp8_S_contig11026.1400.1 ID=prot_Ecto-sp8_S_contig11026.1400.1|Name=mRNA_Ecto-sp8_S_contig11026.1400.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=132bp
MNTDRKLNEDLEATRIPLHDVPVALVVERITREKIAASWSRLCHDGGRPG
DGRHIAQVVRSTSSPSSPAVATATGAFRRHATVRSDEEQERQPQQQQQQQ
QQRSPLTWEGEYPRSRYRGDFFKPPIFDDEPS
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mRNA from alignment at Ecto-sp8_S_contig11026:1701..3099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11026.1400.1 ID=mRNA_Ecto-sp8_S_contig11026.1400.1|Name=mRNA_Ecto-sp8_S_contig11026.1400.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1399bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11026:1701..3099- (Ectocarpus species8 EcLAC_412)
ATGAACACCGATAGAAAGCTGAATGAGGACCTGGAGGCAACCCGCATCCC
TCTTCACGATGTGCCCGTCGCGCTTGTCGTCGAAAGGATCACGCGGGAGA
AGATAGCGGTGAGCGGTGAAACTAGCAAGAGTGCGATGACACCGAGTGAA
CAGTGCATTGTGCTGTAGCGTAGAACCGTGCGTGTAGAAAACTGCAGGCA
GCTGTGTGAGTTGACCTAGGTCAATTGCACGTCCCCGGGCCTCCGGCGGG
GGGCAGGGAGAATTTACCTAGATGGGCAGTACCATGAGGAGAATAACCCC
AAGAAGGGGACTACAAAAGCGCATTAATGTTCTTCGCAAACTCATCACAC
AGAAATACCGGGCTCTTGTGGAACGCTTGTAGACATTAAAAAAACTAGAA
TAGTCTACACGCGACAGAGAAGGCTGGCATCTATGAGCTAGCCTTCGTAG
ACAAGTGTTTTCCCCCTTAGGTCCGTACTTTGGGCTGTATAGCACGTTTA
TCCGCCCCTCCCCCCTCCCACCGAACGCCATATTCATTTCCCCGGGCAAT
CTCTCTACTACAGAAAAAGCTTTGTCGAGATCCCCCTGTGCCAGATTGTT
ACATTTTCTACGCTCTAGCCCATTAGAGTAATTTATCGGGGAGGGGCGAT
ACTCAAACAGCTCTACCTTTTTTCCCCCACCATCCGCCGTAGAGCAAGAG
ACTCCAACAGCGGCATCATCTCTCCCTTACCTCACCAATATTATCTCGGT
GGTGAATGCACTGCTGTGGTAGTCACTGAAGGGTTCAGCAGTCCTCTTTC
CTCACCAAGAGACAAGCTTGTATGGTTGTTCTCGATAGCGAACGGGTGTT
CCTCGGCCAATGTGATACCGCGATTTGCACGCAATACTTTTACCATCTAC
AGGTGAAGAGATCACTTCCTCCGACCCACGGTAACATGTACCTCACACTG
CAAAAGCAAAACGCGAGACGTGGTCAACCTGGGGTAAGAACCTAGTACAT
GACGAAGCAACAACTTTCAATTGTTATATTTGCACCCATCCATGCATCAT
CAGAGCTTCCCTACCCGATGCGCGCCCCCTACCCCCTCTAATCACTCCGC
AACGAGAGCAGGCGTCGTGGTCCCGGCTGTGCCACGACGGGGGTAGACCC
GGCGACGGCCGACATATCGCACAGGTGGTAAGGTCGACGTCGTCGCCGAG
CTCTCCCGCCGTTGCGACGGCGACCGGAGCTTTTCGACGCCATGCTACCG
TCAGGAGCGATGAGGAACAGGAGCGGCAGCCACAGCAGCAGCAGCAGCAG
CAGCAGCAACGTAGTCCCTTGACATGGGAGGGCGAGTACCCCCGGTCCCG
CTATCGAGGGGACTTTTTCAAGCCCCCGATTTTCGATGACGAGCCTTCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11026:1701..3099-

>mRNA_Ecto-sp8_S_contig11026.1400.1 ID=mRNA_Ecto-sp8_S_contig11026.1400.1|Name=mRNA_Ecto-sp8_S_contig11026.1400.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11026:1701..3099- (Ectocarpus species8 EcLAC_412)
ATGAACACCGATAGAAAGCTGAATGAGGACCTGGAGGCAACCCGCATCCC
TCTTCACGATGTGCCCGTCGCGCTTGTCGTCGAAAGGATCACGCGGGAGA
AGATAGCGGCGTCGTGGTCCCGGCTGTGCCACGACGGGGGTAGACCCGGC
GACGGCCGACATATCGCACAGGTGGTAAGGTCGACGTCGTCGCCGAGCTC
TCCCGCCGTTGCGACGGCGACCGGAGCTTTTCGACGCCATGCTACCGTCA
GGAGCGATGAGGAACAGGAGCGGCAGCCACAGCAGCAGCAGCAGCAGCAG
CAGCAACGTAGTCCCTTGACATGGGAGGGCGAGTACCCCCGGTCCCGCTA
TCGAGGGGACTTTTTCAAGCCCCCGATTTTCGATGACGAGCCTTCC
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