mRNA_Ecto-sp8_S_contig11023.1396.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11023.1396.1
Unique NamemRNA_Ecto-sp8_S_contig11023.1396.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Match: A0A6H5JV52_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV52_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 8.060e-42
Identity = 79/86 (91.86%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   10 EDDAWLEVGKGGAKAVVNAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLDLPSSSTSSTSPQNNIWTET 267
            EDDAWLEVGKGGAKAVVNAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLDLPSS     SP+NNIW ET
Sbjct:  435 EDDAWLEVGKGGAKAVVNAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLDLPSSP----SPRNNIWPET 516
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BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Match: D7FJX3_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.610e-29
Identity = 68/88 (77.27%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    4 GEEDDAWLEVGKGGAKAVVNAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLDLPSSSTSSTSPQNNIWTET 267
            GEEDDAWLEVGKGGAKAVVNAPDPRKKV      TGLFY MFRSEVKK+GN +SSVTLE      LDLDLPSS    TSPQNNIWTET
Sbjct:  466 GEEDDAWLEVGKGGAKAVVNAPDPRKKV------TGLFYRMFRSEVKKNGNPQSSVTLE------LDLDLPSS----TSPQNNIWTET 537
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BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Match: A0A662WF33_9STRA (Fucosyltransferase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WF33_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.870e-8
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   13 DDAWLEVGKGGAKAVV--NAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLD 210
            DD W EVGK G  +VV  N  D  +     S +  LF G  RSE+K+SG  +SS+T+E FHCL L+L+
Sbjct:  206 DDGWAEVGKNGKSSVVRQNPVDTTR-----SPINWLFKGALRSELKQSGKKQSSITIEPFHCLHLNLE 268
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Match: A0A2D4CN35_PYTIN (Ubiquitin-specific protease, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CN35_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 4.740e-8
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   13 DDAWLEVGKGGAKAVV--NAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLD 210
            DD W EVGKGG  AV+  N  D  +     S +  LF G  R+E+++ G  +SS+T+E FHCL L+LD
Sbjct:  130 DDGWAEVGKGGKSAVLRQNPVDTAR-----SPINWLFKGTVRAELRQGGKKQSSITIEPFHCLHLNLD 192
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Match: A0A0P1AMX0_PLAHL (USP domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMX0_PLAHL)

HSP 1 Score: 58.2 bits (139), Expect = 6.960e-8
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   13 DDAWLEVGKGGAKAVVNAPDPRKKVSN-SSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLD 210
            DD W EVGK G  +++     +  V N  S +  LF G  RSE+K+SG  +SS+T+E FHCL L+LD
Sbjct:  275 DDGWAEVGKKGKSSMLR----QNPVDNIRSPINWLFKGTLRSELKQSGKRQSSITIEPFHCLHLNLD 337
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Match: W2PWW6_PHYPN (USP domain-containing protein n=39 Tax=Phytophthora TaxID=4783 RepID=W2PWW6_PHYPN)

HSP 1 Score: 58.2 bits (139), Expect = 6.970e-8
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   13 DDAWLEVGKGGAKAVV--NAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLD 210
            DD W EVGK G  +V+  N  D  +     S +  LF G  RSE+K+SG  +SS+T+E FHCL L+LD
Sbjct:  290 DDGWAEVGKKGKSSVLRQNPVDTTR-----SPINWLFKGALRSELKQSGKRQSSITVEPFHCLHLNLD 352
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Match: K3XBS3_GLOUD (USP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBS3_GLOUD)

HSP 1 Score: 57.8 bits (138), Expect = 9.620e-8
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   13 DDAWLEVGKGGAKAVVNAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLD 210
            DD W EVGK G  +V+   +P   +   S +  LF G  RSE+K+SG  +SS+T+E FHCL L+LD
Sbjct:  398 DDEWAEVGKKGKSSVLRQ-NPVDTIR--SPINWLFKGALRSELKQSGKKQSSITIEPFHCLHLNLD 460
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Match: A0A662XL04_9STRA (Fucosyltransferase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XL04_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 9.880e-8
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   13 DDAWLEVGKGGAKAVV--NAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLD 210
            DD W EVGK G  +V+  N  D  +     S +  LF G  RSE+K+SG  +SS+T+E FHCL L+L+
Sbjct:  280 DDGWAEVGKNGKSSVLRQNPVDTTR-----SPINWLFKGALRSELKQSGKKQSSITIEPFHCLHLNLE 342
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Match: H3GLU7_PHYRM (USP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLU7_PHYRM)

HSP 1 Score: 56.6 bits (135), Expect = 2.430e-7
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   13 DDAWLEVGKGGAKAVVNAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLD 210
            DD W EVGK G  +V+   +P   +   S +  LF G  RSE+K++G  +SS+T+E FHCL L+LD
Sbjct:  282 DDGWAEVGKKGKSSVLRQ-NPVDTIR--SPINWLFKGALRSELKQTGKRQSSITVEPFHCLHLNLD 344
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Match: D0N4H4_PHYIT (Ubiquitin-specific protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N4H4_PHYIT)

HSP 1 Score: 56.6 bits (135), Expect = 2.430e-7
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   13 DDAWLEVGKGGAKAVVNAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLD 210
            DD W EVGK G  +V+   +P   +   S +  LF G  RSE+K++G  +SS+T+E FHCL L+LD
Sbjct:  297 DDGWAEVGKKGKSSVLRQ-NPVDTIR--SPINWLFKGALRSELKQNGKRQSSITVEPFHCLHLNLD 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11023.1396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JV52_9PHAE8.060e-4291.86USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJX3_ECTSI1.610e-2977.27USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A662WF33_9STRA3.870e-847.06Fucosyltransferase n=1 Tax=Nothophytophthora sp. C... [more]
A0A2D4CN35_PYTIN4.740e-845.59Ubiquitin-specific protease, putative (Fragment) n... [more]
A0A0P1AMX0_PLAHL6.960e-846.27USP domain-containing protein n=1 Tax=Plasmopara h... [more]
W2PWW6_PHYPN6.970e-847.06USP domain-containing protein n=39 Tax=Phytophthor... [more]
K3XBS3_GLOUD9.620e-846.97USP domain-containing protein n=1 Tax=Globisporang... [more]
A0A662XL04_9STRA9.880e-845.59Fucosyltransferase n=1 Tax=Nothophytophthora sp. C... [more]
H3GLU7_PHYRM2.430e-745.45USP domain-containing protein n=1 Tax=Phytophthora... [more]
D0N4H4_PHYIT2.430e-745.45Ubiquitin-specific protease, putative n=2 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11023contigEcto-sp8_S_contig11023:65..1129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score120.6
Seed ortholog evalue3.8e-25
Seed eggNOG ortholog2880.D7FJX3
Preferred nameUBP24
Model size270
KEGG koko:K11841
KEGG Pathwayko04139,map04139
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016579,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0070646,GO:0070647,GO:0071704,GO:1901564
Exons3
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1871@1,KOG1871@2759
EC3.4.19.12
Cds size267
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143188.5677774-CDS-Ecto-sp8_S_contig11023:64..1661681143188.5677774-CDS-Ecto-sp8_S_contig11023:64..166Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11023 65..166 +
1681143188.5827181-CDS-Ecto-sp8_S_contig11023:665..7611681143188.5827181-CDS-Ecto-sp8_S_contig11023:665..761Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11023 666..761 +
1681143188.5915787-CDS-Ecto-sp8_S_contig11023:1059..11281681143188.5915787-CDS-Ecto-sp8_S_contig11023:1059..1128Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11023 1060..1128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11023.1396.1prot_Ecto-sp8_S_contig11023.1396.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11023 65..1128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11023.1396.1

>prot_Ecto-sp8_S_contig11023.1396.1 ID=prot_Ecto-sp8_S_contig11023.1396.1|Name=mRNA_Ecto-sp8_S_contig11023.1396.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=89bp
GGEEDDAWLEVGKGGAKAVVNAPDPRKKVSNSSVVTGLFYGMFRSEVKKS
GNAKSSVTLEAFHCLQLDLDLPSSSTSSTSPQNNIWTET
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mRNA from alignment at Ecto-sp8_S_contig11023:65..1129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11023.1396.1 ID=mRNA_Ecto-sp8_S_contig11023.1396.1|Name=mRNA_Ecto-sp8_S_contig11023.1396.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1065bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11023:65..1129+ (Ectocarpus species8 EcLAC_412)
GGAGGAGAAGAAGACGACGCCTGGCTTGAGGTCGGGAAAGGAGGGGCCAA
GGCTGTGGTGAACGCGCCGGATCCGCGCAAGAAGGTTTCGAACTCATCCG
TGGTGCGTACTGTGCACCATTTTTTCTCGTTTTTTTTTGTCGGTTGCCCC
CCGTATATATAATATATATAGAGAGATTACCCGCGGCCCGACTTTTTAAG
AACCTGGCAGTTGTGAACTCCGGCGTCAGAGTTATGGATGGTATCAGAAC
TTGGCCATGAGGACAGATGCTCAGTCAAGAATCCTACACTAGCGCCTGCA
CAGTCGATGTTGGGCTAGTTACTCCGCAACGAGCGAGCTTCGGGCGAAAG
AAGAATTTTTCTAACGTGCGGGCGCGTTCTGCACATACCCTCTGAGGACT
TTCATCTCCATCTGCGCCCCCCCCCCCCCCCCCCCCCACCCCTAAACCGT
CACGGGGCACCCCACAGCCACCAACCCTCACNNNNNNNNNNAGAAAAAAG
TTTTTTTTTGGCGGGGGTGTTTTTCCCACCCCCTCCCAGAGTCTTTTTTT
CCCCTCCTCGGCCCCCCCCCCCCCCCCCCCCCTCTTTGTGTTCTACGACA
GGTGACGGGACTGTTCTACGGAATGTTCCGGTCAGAGGTGAAGAAGAGCG
GCAATGCCAAATCTTCCGTCACTCTTGAGGCCTTCCATTGCTTGCAGGTA
CAATGAGAGGCTCGCGGTTGCGCCTGTACCGCAGGTTGCATTTTTTTTTC
TTCTTTTTGCAGAAGATTCGAAAACAGCCGTGGACCGATCGTCACAGACA
GCTCGAGTACAAACCCGTTTCCATGCCCTCCCCCCCCCCCCCCCCCCCCA
AAACACCGCAACCAAGCGCCCCAACCCTGGCCTCCTAACCAAAACAACCC
CAAACCCCCCCCAAAAACAACTTTACCACAACCCCCCCGTACAAACCCCC
TTCCCTCCCCCCCCCCCCCCCCCCCCCCCTAAAAACGCGAAACAGTTGGA
TCTAGACCTGCCATCATCATCAACATCATCAACATCGCCCCAGAACAACA
TTTGGACCGAGACGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11023:65..1129+

>mRNA_Ecto-sp8_S_contig11023.1396.1 ID=mRNA_Ecto-sp8_S_contig11023.1396.1|Name=mRNA_Ecto-sp8_S_contig11023.1396.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11023:65..1129+ (Ectocarpus species8 EcLAC_412)
GGAGGAGAAGAAGACGACGCCTGGCTTGAGGTCGGGAAAGGAGGGGCCAA
GGCTGTGGTGAACGCGCCGGATCCGCGCAAGAAGGTTTCGAACTCATCCG
TGGTGACGGGACTGTTCTACGGAATGTTCCGGTCAGAGGTGAAGAAGAGC
GGCAATGCCAAATCTTCCGTCACTCTTGAGGCCTTCCATTGCTTGCAGTT
GGATCTAGACCTGCCATCATCATCAACATCATCAACATCGCCCCAGAACA
ACATTTGGACCGAGACG
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