mRNA_Ecto-sp8_S_contig1102.1393.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1102.1393.1
Unique NamemRNA_Ecto-sp8_S_contig1102.1393.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1102.1393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1102contigEcto-sp8_S_contig1102:961..1439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size329
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143188.3071022-CDS-Ecto-sp8_S_contig1102:960..10331681143188.3071022-CDS-Ecto-sp8_S_contig1102:960..1033Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1102 961..1033 +
1681143188.3166723-CDS-Ecto-sp8_S_contig1102:1184..13331681143188.3166723-CDS-Ecto-sp8_S_contig1102:1184..1333Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1102 1185..1333 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143188.3260496-UTR-Ecto-sp8_S_contig1102:1333..14391681143188.3260496-UTR-Ecto-sp8_S_contig1102:1333..1439Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1102 1334..1439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1102.1393.1prot_Ecto-sp8_S_contig1102.1393.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1102 961..1333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1102.1393.1

>prot_Ecto-sp8_S_contig1102.1393.1 ID=prot_Ecto-sp8_S_contig1102.1393.1|Name=mRNA_Ecto-sp8_S_contig1102.1393.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=74bp
CIGIRVPLDPPPPRKHPKYENEYVGVGCFSFGRPIGHDHFFYLFVGKSRW
GRRCPLLFDTVAQSPGGGILARS*
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mRNA from alignment at Ecto-sp8_S_contig1102:961..1439+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1102.1393.1 ID=mRNA_Ecto-sp8_S_contig1102.1393.1|Name=mRNA_Ecto-sp8_S_contig1102.1393.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=479bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1102:961..1439+ (Ectocarpus species8 EcLAC_412)
TGTATAGGAATTAGAGTACCGTTAGACCCCCCCCCCCCCCGAAAACATCC
CAAATATGAAAATGAGTACGTAGGTGTCGGATGTTTTNNNNNNNNNGACG
AAGCTAACCCAAAAAAAAAAAGTTTCCCCCCCCCGGGCCCCCTTTTTTTT
TTAAATGTATTAGGAGACCGTTAAGCCCCCCCCCCCCCCCCGAAAACATC
CCAAATATGAAAATGAGTACGTAGGTGTCGGATGTTTTTCTTTCGGGCGC
CCAATTGGACACGACCATTTTTTCTATCTTTTCGTGGGGAAATCCAGGTG
GGGAAGGAGATGTCCTCTGTTATTTGATACAGTTGCGCAATCTCCGGGTG
GAGGAATCCTTGCACGAAGTTAAAGTCGTGTTCGACAACCACCCAAAACG
GTAGGCACTAAAGCGGAGCACAGCAGCGATCATGCAGTAGTGACGTCGCA
GCGTACGCCTGTATCGATCACCATGTTGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1102:961..1439+

>mRNA_Ecto-sp8_S_contig1102.1393.1 ID=mRNA_Ecto-sp8_S_contig1102.1393.1|Name=mRNA_Ecto-sp8_S_contig1102.1393.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1102:961..1439+ (Ectocarpus species8 EcLAC_412)
TGTATAGGAATTAGAGTACCGTTAGACCCCCCCCCCCCCCGAAAACATCC
CAAATATGAAAATGAGTACGTAGGTGTCGGATGTTTTTCTTTCGGGCGCC
CAATTGGACACGACCATTTTTTCTATCTTTTCGTGGGGAAATCCAGGTGG
GGAAGGAGATGTCCTCTGTTATTTGATACAGTTGCGCAATCTCCGGGTGG
AGGAATCCTTGCACGAAGTTAA
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