mRNA_Ecto-sp8_S_contig11019.1391.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11019.1391.1
Unique NamemRNA_Ecto-sp8_S_contig11019.1391.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11019.1391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11019contigEcto-sp8_S_contig11019:3596..5926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1242
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_006880.1
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143188.2524807-UTR-Ecto-sp8_S_contig11019:3595..46441681143188.2524807-UTR-Ecto-sp8_S_contig11019:3595..4644Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11019 3596..4644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143188.2691634-CDS-Ecto-sp8_S_contig11019:4644..47001681143188.2691634-CDS-Ecto-sp8_S_contig11019:4644..4700Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11019 4645..4700 -
1681143188.2800503-CDS-Ecto-sp8_S_contig11019:5790..59261681143188.2800503-CDS-Ecto-sp8_S_contig11019:5790..5926Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11019 5791..5926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11019.1391.1prot_Ecto-sp8_S_contig11019.1391.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11019 4645..5926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11019.1391.1

>prot_Ecto-sp8_S_contig11019.1391.1 ID=prot_Ecto-sp8_S_contig11019.1391.1|Name=mRNA_Ecto-sp8_S_contig11019.1391.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=64bp
RRAGCTSRLLPTVRACSGTLPRTGARLAASASGHVVLAARGVDFECSCSR
YLWRPPLLPPTAS*
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mRNA from alignment at Ecto-sp8_S_contig11019:3596..5926-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11019.1391.1 ID=mRNA_Ecto-sp8_S_contig11019.1391.1|Name=mRNA_Ecto-sp8_S_contig11019.1391.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2331bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11019:3596..5926- (Ectocarpus species8 EcLAC_412)
AGGAGAGCTGGTTGCACCTCGAGACTGCTGCCAACTGTACGTGCGTGTTC
TGGCACCCTGCCGCGTACGGGTGCACGTCTTGCTGCTTCTGCTTCTGGTC
ATGTTGTGCTTGCTGCACGGGGTGTCGACTTTGAATGTAAGTCTTGAGAT
GCTGCTGTAAACCCATCCGGTCACGTATGTCAGCCTTTTTCTACACTTTG
CTGTTACGTGGTCAAGGCTGAAAGAGTTGAGTCGGAGACCCGGTCAACAA
GAAGCTACGGTATGTGTTTTCCACCCAACCGCAGGCTCGATTCCTCTCTT
GATGCGTTGGCCGGAAGTATTCTTGAAAAGCAAGCCCCCACATTTCTGCA
GCTGTCCACTTTTTTCTCAGGATTATGGGACCCAAGTAATTTCGTTAAAG
TAGGGACGCCGGAATCTGTCGTGGAAACACACATCTTTCGTGTTGTTGAA
GATCGTTCAAAAATTTGCGTGCCCTCGATGTAAAATGCCAAAACATCTTA
CATGTACCATCCGTCATGGATTTTGTATACGAATTTTTGGGAGGATGCGG
GACAGAAGCCAGTCGAGCGCATTTTATTAAAGCAGCAGGATATATATACG
AACATGTGTTTTCATCCCATGTTTTCTCGCTCACGTCCACGGAAGCACGG
CGCACACACAGCAGCGGGCGGCGAACTTATTTTTGGGTAGTTGCTGTCTC
TTCACATTAAAAACCGACCGTTCCGGTCTCCGCTCGGTACCTTCTAATGT
CCGTACTGGTCCAACTGACGCGTGAACCTCGGAAACCTGAAACAAGAGAG
AGAGCGAGTGATGTTACAGAATACTTAGGACACCTTCGGAGTGCCACAGG
CACCGTGAGAAAATCCTCTACTTCTGACGCTCTCTGTTCTTTTTCACTTT
TCGCGGACGCTGCATGCAGTTACCGAACATAATTCGAATAAAGTTGGGTG
ACGGTCTCGCTAGCGCTTGGAATCCCTTTGCGAGAGGGGGGGAGGGGTGT
TGTCTTCGATGAGTTTGCTCGGCTCGCATTTCTTTGGCGTTCTCTCTCCC
CACGAAGTGTATCCGACGACACGATGGATTTGCCCTTGAAAAACGTAAAT
TTGAGTCCAAGGCCATCATGCTGTCGCCCACCCATTCTCCGTAGATAGAT
ACATGAAGATGCCTTGTGTCTCACTCACTCAAGTGGCCAACCGTTTCCCC
GATGTTCTCGCGCCATCTGCCAACAGGTTCTTGCTCTCGCTACCTTTGGC
GGCCTCCCCTGCTTCCCCCGACTGCGTCCTGATCCTTGACAAAAGCAACT
CATCAATTACAAAGGATGGGCAAGAAGGGCAATGACTTTTCTCGCGATGC
AGTAGCTTGAGCACGGCCCCGGTGCGGTCATCGCCTTGGTTACTTCCGGG
ACTGGACGTATTTGCGCTTTTTCATTTCGGAAGCACAGTCGTTGCTGTCG
AGCTGCGTCTGGGGACATGTTGCGGGGATATGCCTCCGTTCTCCCCCCTC
ACCCCCCCCCGCTGCATCCGTTCATTGCTCGCTTTGACCTTGTATTTTTG
CGGTCGTTAGACGCTGACGCCATGTGGTGGCTCAGCTGCTTGGATTACCA
TTGAGTTGTACCTGGTTGGCAAAGGATTTAGTGCTGATGTTGGCCATTCT
TAGACCGTGTCGCGGATGCCGCTAACGTTTGCGTTGGAGGTGTGGGATCA
ACACGAGTGTGTACTTTCGGAGAAATCGTAGCGTACCTCCTCAAACTCGT
TGTGTGCGTTGGAACGAGCATGTGATGATTTGGTGCGGTGCCTGCAAATT
TTGACGGACTCTTGTTTTTTCTTGCCTGCTTCATACGGCCGCTTGAAATT
CGCGCACTCTCCTCAATCTCATCTGGATAAATGGAGACCGACTGAGGGGC
TGGTTCGTCTTTCCAGCCTTGTGTGTGATGTATTTGTTGTCGCCGGTTTG
GAAACGTCACTCTGTTGCACCATGTAAGTAGGTGTCGACGCTTGTTTTTC
TGATGACCGTTGGATGGCGGGGAGTTGCTCCTCAATTTTTTCTGTTTAGG
GTCCGTGGCCTGGCGTTCTTGCCTTCCATGGATGGTGTAGTGCTTTTGCG
TGATTGTTTGACGTACTGAGCTCATGCCTGAAACCGCTTCAGATAGCCGC
ACTCCCCCAAGCAGCGTTTTACGTGTCGACGTTGCGTGGTAGCTGTCCGT
TGACATGCAGACGTGTCGTGGTGCATTGTGTGTTGTTGAGAACGGTAATT
AACTTCAACAGACCCCGTGTTGATGTTTTTGAAAGAAATGAAACAAAACC
GACGACAGCGTGTCAGGCATCCGTTTTTGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11019:3596..5926-

>mRNA_Ecto-sp8_S_contig11019.1391.1 ID=mRNA_Ecto-sp8_S_contig11019.1391.1|Name=mRNA_Ecto-sp8_S_contig11019.1391.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11019:3596..5926- (Ectocarpus species8 EcLAC_412)
AGGAGAGCTGGTTGCACCTCGAGACTGCTGCCAACTGTACGTGCGTGTTC
TGGCACCCTGCCGCGTACGGGTGCACGTCTTGCTGCTTCTGCTTCTGGTC
ATGTTGTGCTTGCTGCACGGGGTGTCGACTTTGAATGTTCTTGCTCTCGC
TACCTTTGGCGGCCTCCCCTGCTTCCCCCGACTGCGTCCTGA
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