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Homology
BLAST of mRNA_Ecto-sp8_S_contig11016.1388.1 vs. uniprot
Match: D7FQ47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ47_ECTSI) HSP 1 Score: 839 bits (2168), Expect = 3.710e-300 Identity = 456/491 (92.87%), Postives = 466/491 (94.91%), Query Frame = 1
Query: 1 MAQPAVVAAEDLEHSNEYGDEGFESDVPRSRPSRDDRESSEKCVEESAALGLDTGLDDADLQISASSSDAGTAGKTSVPLARQTGSELAQGEQELNKTQTQRLVNEENGIDEEGKGVAFGKVQESRTEGIDNREESDIGLKERDLQFRVPTDGDGDNDDGAREYSSLDMNFDYAVCSLDDDRNPSPEKFLGRTDSVELSSNDLFSPQPFGAPEKE-LHVGDEVQLEQQSPHTPHGDRCRTRGRQKERDIRGARSRTFKPRYRSQESDGRTRLRASSQSRADAGGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLALQLSADEDDFSTSPSFSAAMQLQQAAPPAFPRGGGTPAPSPRVARGWKHRNPPPPGRISPVERNLSYTTLVRQLDMGGRRARTLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHEYALARRLWLTEEELRTARSTISTLGAEEQG 1470
MAQPAVVAAED EHSNEYGDEGFESDVPRSRPSRDDRESSEK VEESA LGLDTGLDDADLQISASSSDAGTAGKTS PLARQTGSELAQGEQELNKTQTQRLV+ ENGIDEEGKGVAFG QESRTEGIDNRE S+ GLKERDL FRVPTD DGD+DDGAREY SLDMN D AV SLDDDR+PSPEKFLGRT SVE SSNDLFSPQPFGAPEKE LHVGDEVQLEQ+ PH PHGDRC+TRGR+KE DIRGARSRTFKPRYRSQE+DGRTRLRASSQSRADAGGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLALQLSADEDDFSTSPSFS AMQLQQAAPPAFPRGGGTPAPSPRVARGW H+NPPPPGRISPVERNLSYTTLVRQLDMGGRRARTLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCH YALARRLWLTEEELRTARSTISTLGAE +G
Sbjct: 1 MAQPAVVAAEDPEHSNEYGDEGFESDVPRSRPSRDDRESSEKRVEESAVLGLDTGLDDADLQISASSSDAGTAGKTSAPLARQTGSELAQGEQELNKTQTQRLVDGENGIDEEGKGVAFGNAQESRTEGIDNREGSETGLKERDLPFRVPTDSDGDDDDGAREYPSLDMNLDNAVFSLDDDRDPSPEKFLGRTGSVEFSSNDLFSPQPFGAPEKEELHVGDEVQLEQELPHKPHGDRCKTRGRKKESDIRGARSRTFKPRYRSQENDGRTRLRASSQSRADAGGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLALQLSADEDDFSTSPSFSTAMQLQQAAPPAFPRGGGTPAPSPRVARGWTHQNPPPPGRISPVERNLSYTTLVRQLDMGGRRARTLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHGYALARRLWLTEEELRTARSTISTLGAEAKG 491
BLAST of mRNA_Ecto-sp8_S_contig11016.1388.1 vs. uniprot
Match: A0A6H5KVN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN9_9PHAE) HSP 1 Score: 762 bits (1968), Expect = 2.390e-267 Identity = 424/490 (86.53%), Postives = 432/490 (88.16%), Query Frame = 1
Query: 1 MAQPAVVAAEDLEHSNEYGDEGFESDVPRSRPSRDDRESSEKCVEESAALGLDTGLDDADLQISASSSDAGTAGKTSVPLARQTGSELAQGEQELNKTQTQRLVNEENGIDEEGKGVAFGKVQESRTEGIDNREESDIGLKERDLQFRVPTDGDGDNDDGAREYSSLDMNFDYAVCSLDDDRNPSPEKFLGRTDSVELSSNDLFSPQPFGAPEKE-LHVGDEVQLEQQSPHTPHGDRCRTRGRQKERDIRGARSRTFKPRYRSQESDGRTRLRASSQSRADAGGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLALQLSADEDDFSTSPSFSAAMQLQQAAPPAFPRGGGTPAPSPRVARGWKHRNPPPPGRISPVERNLSYTTLVRQLDMGGRRARTLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHEYALARRLWLTEEELRTARSTISTLGAEEQ 1467
MAQPAVVAAEDLEHSNEYGDEGFESDVPRSRPSRD RESSEKCVEES LGLDTGLDDADLQ TGSELAQGEQELNKTQ QRLV EN IDEEGKGVA+ Q RTEG+D+RE S+ GLKERDL FRV TDGDGDNDDGARE SLDMNFD AV S DDDRN PEKFLGRT SVELSSNDL SPQPFGAPEKE LHVG EVQLEQQ PH PHGDRC TRGR+KERDIRGARSR F P+YRSQESDGR RLRASSQSRA+A GAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLALQLSADEDDFSTSPSFSAAMQLQQAAPPAFPRGGGTPAPSPRVARGW HRNPPPPGRISPVERNLSYTTLVRQLDMGGR+ARTLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCH YALARRLWLTEEELRTARSTISTLGAE Q
Sbjct: 1 MAQPAVVAAEDLEHSNEYGDEGFESDVPRSRPSRDGRESSEKCVEESVVLGLDTGLDDADLQ---------------------TGSELAQGEQELNKTQAQRLVEGENAIDEEGKGVAYRNSQGGRTEGMDDREGSETGLKERDLPFRVSTDGDGDNDDGARENPSLDMNFDKAVFSPDDDRNFPPEKFLGRTGSVELSSNDLSSPQPFGAPEKEELHVGGEVQLEQQLPHKPHGDRCETRGREKERDIRGARSRNFNPKYRSQESDGRIRLRASSQSRANARGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLALQLSADEDDFSTSPSFSAAMQLQQAAPPAFPRGGGTPAPSPRVARGWTHRNPPPPGRISPVERNLSYTTLVRQLDMGGRQARTLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHGYALARRLWLTEEELRTARSTISTLGAEGQ 469
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1485 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Cds size | 1485 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143188.037568-CDS-Ecto-sp8_S_contig11016:2..26 | 1681143188.037568-CDS-Ecto-sp8_S_contig11016:2..26 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11016 3..26 - |
| 1681143188.0458534-CDS-Ecto-sp8_S_contig11016:801..966 | 1681143188.0458534-CDS-Ecto-sp8_S_contig11016:801..966 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11016 802..966 - |
| 1681143188.0541985-CDS-Ecto-sp8_S_contig11016:1161..1503 | 1681143188.0541985-CDS-Ecto-sp8_S_contig11016:1161..1503 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11016 1162..1503 - |
| 1681143188.0626318-CDS-Ecto-sp8_S_contig11016:1940..2105 | 1681143188.0626318-CDS-Ecto-sp8_S_contig11016:1940..2105 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11016 1941..2105 - |
| 1681143188.0713744-CDS-Ecto-sp8_S_contig11016:2332..2935 | 1681143188.0713744-CDS-Ecto-sp8_S_contig11016:2332..2935 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11016 2333..2935 - |
| 1681143188.0802724-CDS-Ecto-sp8_S_contig11016:3809..3995 | 1681143188.0802724-CDS-Ecto-sp8_S_contig11016:3809..3995 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11016 3810..3995 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig11016.1388.1 >prot_Ecto-sp8_S_contig11016.1388.1 ID=prot_Ecto-sp8_S_contig11016.1388.1|Name=mRNA_Ecto-sp8_S_contig11016.1388.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=495bp
MAQPAVVAAEDLEHSNEYGDEGFESDVPRSRPSRDDRESSEKCVEESAAL GLDTGLDDADLQISASSSDAGTAGKTSVPLARQTGSELAQGEQELNKTQT QRLVNEENGIDEEGKGVAFGKVQESRTEGIDNREESDIGLKERDLQFRVP TDGDGDNDDGAREYSSLDMNFDYAVCSLDDDRNPSPEKFLGRTDSVELSS NDLFSPQPFGAPEKELHVGDEVQLEQQSPHTPHGDRCRTRGRQKERDIRG ARSRTFKPRYRSQESDGRTRLRASSQSRADAGGAASIRRQRQERLIQQLT RDNGVLQRKVAGYQLALQLSADEDDFSTSPSFSAAMQLQQAAPPAFPRGG GTPAPSPRVARGWKHRNPPPPGRISPVERNLSYTTLVRQLDMGGRRARTL KRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARA QDRKFEGCHEYALARRLWLTEEELRTARSTISTLGAEEQGGRSSF back to topmRNA from alignment at Ecto-sp8_S_contig11016:3..3995- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig11016.1388.1 ID=mRNA_Ecto-sp8_S_contig11016.1388.1|Name=mRNA_Ecto-sp8_S_contig11016.1388.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3993bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11016:3..3995- (Ectocarpus species8 EcLAC_412) ATGGCACAACCAGCGGTGGTCGCTGCCGAAGATCTCGAGCACAGCAACGA
GTATGGCGACGAAGGATTTGAAAGCGACGTGCCCAGAAGCCGCCCCAGCA
GGGATGACCGAGAAAGTTCTGAGAAATGCGTTGAGGAATCCGCTGCCTTG
GGCTTAGACACTGGCCTGGATGACGCTGACTTGCAGGTGCACGTAGTAGA
TGCTATGAAAGAGTGGTGCATGATGTGTGTTCACATCATATGTATCTGCC
GCAGATCTAGTCGAGACTACACAATACATAGTTTCGCCGCGTGTGGCTTG
TGCGTGCTGTAGGAACGTAGGAACAAACATCAAGTGTACGAAGGCGCTCT
ACACTAATGTTTATGTACCCGCACACCCCTTGGTTGCGCCATGATCGGAG
CTCTTTGGTAAAGTGACTCTTTCGTCGTGTGGGATGTCGCCATCATTCTT
CAGTCCGTGTCCAACGGAAGTCTCCGCGTTGGTGACGGAAAATGGGTGGT
TGTCCGCGACATTAGTCTGCGTAGATTGTCTACATGACCAGGTCTAATCA
TTGTAGACCTATTAGTACAGATTACAAGTCGCTACATAATGACACAATGA
TATCGTAGTAGAAGTTCTGGATGGTAGCAAATGTGGCGATCTCGATAACT
TAGGAACCTCAAACGTTTGAGGAGTGAATCTACTCTAGATTTTGTCCTCT
TCACTGCTGACGAGGAAGACTATCGGTGAGGAATACTAGCCTCAGACTAT
ATACTTGGTGCATCAGTTGTGCCGAAAATATTTCCCGGCCGACAACACCA
GACAGTAGTCGGCAGGCACGGTTAAATAGTAATCGTGTACTACGTGTAGT
CGAAAGGACGCACAAATACATACCTCGAAGTAGAATATAAGTGCCTGGGA
GCGCCGACTCTTCTCGTGCCCTGGCCCAAAAGCGTGCTCAATATTACATA
CCGGATGATCGGGGCAACATCCTGCACATCCGACCCGGCTGACACACTTT
TACAACAACGCATGGTTTATTGATTCGACATTATTCTCTTTCGTCGTACA
ACACACGAAGATCTCGGCCAGTAGCAGTGACGCTGGGACTGCTGGTAAGA
CTTCGGTACCCCTCGCACGGCAGACGGGCTCGGAACTGGCTCAAGGGGAG
CAAGAGCTGAACAAGACCCAAACCCAACGCCTTGTCAACGAGGAAAACGG
GATCGACGAGGAGGGAAAAGGGGTAGCGTTCGGAAAAGTACAAGAGAGTA
GGACGGAAGGCATTGACAACCGAGAAGAAAGCGACATCGGTTTGAAGGAG
CGGGATTTGCAGTTCCGAGTCCCAACAGATGGCGATGGCGACAATGACGA
CGGTGCTCGCGAGTACTCAAGCCTCGACATGAATTTTGATTATGCAGTTT
GTTCTCTAGACGACGACAGAAACCCTTCGCCAGAGAAGTTTCTCGGCCGA
ACAGATAGCGTAGAACTTAGCAGCAACGACTTATTTTCACCACAACCCTT
CGGAGCACCCGAGAAAGAGCTCCATGTTGGTGATGAGGTGCAGCTGGAAC
AGCAGTCGCCGCACACGCCCCACGGTGATCGGTGCAGGACCAGGGGGAGG
CAAAAGGAACGCGATATTCGAGGGGCAAGATCGCGAACTTTCAAACCGAG
ATATCGAAGCCAGGTTAGATTGGCCTATCTACGGAGTAGATGCAAAAGAT
ACGACGAGACAGCTGTTGATTTAAGTGTAGACGGCTGGAACGTTGTCGTT
TACCTCTTATTTCTCTTACCGAGATTAAAACGGAATCGACAAATATATCG
CCATTTGCTCACGTACAAAATGCCTAATATGTACACCAACGCCATACCTC
TCCGCTTCGTACGGCCATCAAACTCTTGGCGGCCAAACAGGAAAGCGATG
GGCGAACAAGGCTGCGAGCAAGCAGCCAAAGCCGTGCGGACGCCGGGGGG
GCGGCGAGCATACGGCGGCAGCGACAGGAGCGCTTGATTCAGCAGCTCAC
GCGTGACAACGGGGTGTTGCAGCGCAAAGTAGCGGGCTACCAGCTTGCGT
TGCAGGTTAGAAGCCCGTGCGTAGGCCTGAGAGTGAACAGTTTGACGGAT
CGACCGGGCATCGGGGTCGTTCCCGTGTCCGGCACTGAGGACTCAGCTGA
AACTAACCGCTACAACCCCATGACGTATTGCAAGTTAGAATGTCAAGCGA
AATTTCGAATGCCTCTTGATGGCCAGACGGCCGGATATACCGCCCAATCA
GCTAGATAGGGTAAAAACCTCGACCACACACAAGTCATTGGTGAATAACG
TTTTCCACGACAGCGCACCATTTAAACTGGTGGGCTTCATCACAACCCTC
CTCCTCCACTCACTGATTGATGCGTAACCCCCCCATCACGTCTCCGTCTA
TCCTCCGGTGCATATACCCTCCGACAACAAACCTTCAACACGGACGCGGC
CGGAACATCCCCCCCCCGACAACGACAAATAAACGGGAACAGTTATCCGC
CGATGAAGACGACTTTTCCACGAGCCCGTCCTTCTCCGCCGCCATGCAGC
TGCAGCAAGCCGCACCACCGGCCTTCCCGCGCGGTGGGGGTACGCCCGCG
CCATCCCCCCGCGTCGCCAGGGGCTGGAAGCACCGAAATCCACCGCCGCC
TGGCCGCATCTCTCCTGTCGAGCGCAACCTCTCGTACACTACCCTGGTGC
GGCAGCTTGACATGGGTGGGAGGCGAGCGAGGACGCTGAAGCGGGAGAAC
GAGGCTCTAGGGGCGAGGGTGAACGAGCTCGAGAGCGGGGCGGTCCTCAG
AGCGACGCAGTCGAGGCTCTCAGAGCGGGACGAAGTGAGTCGGCCAAGTG
CACGTTGAGAGTGTAGCGGCCATTGCAATTTTCAACGAACGCTTCATATA
TGCTGTTGGCATAGGACGCGATCACACGGACATCAGTATTGAATCTGGAG
CAGCAGCCCTTCACCTCTACCCATCGCTCATTTTCCGTCACTCGTTGTTG
GCTTTTCCGTGCATACCCCAATAAACCAGGAAATAGTGGCACTCCGAGAG
GAACTGTCCGTTATGAACCGACTTGCTCGAGCTCAAGACCGCAAGTTCGA
GGGATGCCACGAGTACGCCCTCGCTCGTCGACTGTGGCTAACAGAGGAGG
AGCTACGGACAGCTCGCTCAACCATATCCACACTGGGAGCCGAGGTATGT
CGCGATCCACCGTGCGATTCGCAATCACCAAACGTCGGAAGCACTTGGGT
AGCATACCAATGGCATCGTGTTGTTGATTTGTGACCGGGAACAGAAAATC
AAACGCACTTTGCACAGAATGTGTGCATGTCGGCTTGCCACACTTGCCAG
ATAAGTCTAAACATAAACATTGGCGCGAGAAAACTCACTTCTGCAGATGT
TATTCGCGAAGTCGATTGCTTGCGGGGCAGGGGTTTCAACTTGCGAAGAA
ACGAAGAGGTTCTTTTTGACGTGATACCACAACTATAATAACTGTGAACG
GCCGATTCTGAAGAAATACACGGGGAAATGGTCACAGGTTCAAGGACAGG
ATACACCGTCACCAACACAACGAGCCCCTCACTGTTAAATCGCGATTCAT
TGCGAAGAAACGAAGAGGTTCTTTTTGACGTGATACCACAACTATAATAA
CTGTGAACGGCCGATTCTGAAGAAATACACGGGGAAATGGTCACAGGTTC
AAGGACAGGATACGCCGTCACCAACACAACGAGCCCCTCACTGTTAAATC
GCGATTCAAAACTCGCTCCAGGTGTATGGATTGCGCCAGCTCCGAAAGAC
ACAAGGCCAGGATCGACGCCCTCGTAACAAGATAGTATCGGCAGAGTCAA
CCCCTGACAATAGCCACTCAAACACGGGGACGCAACAACGAAGTCCAAGG
CGGCCGTTGTGCCGCAGGAGAGCGAGCAACCCAGACAACGCTGCGCCATA
TCCCCGAATAACACGGCAGGAGCAAGGAGGTAGAAGTAGTTTC back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig11016:3..3995- >mRNA_Ecto-sp8_S_contig11016.1388.1 ID=mRNA_Ecto-sp8_S_contig11016.1388.1|Name=mRNA_Ecto-sp8_S_contig11016.1388.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1485bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11016:3..3995- (Ectocarpus species8 EcLAC_412) ATGGCACAACCAGCGGTGGTCGCTGCCGAAGATCTCGAGCACAGCAACGA GTATGGCGACGAAGGATTTGAAAGCGACGTGCCCAGAAGCCGCCCCAGCA GGGATGACCGAGAAAGTTCTGAGAAATGCGTTGAGGAATCCGCTGCCTTG GGCTTAGACACTGGCCTGGATGACGCTGACTTGCAGATCTCGGCCAGTAG CAGTGACGCTGGGACTGCTGGTAAGACTTCGGTACCCCTCGCACGGCAGA CGGGCTCGGAACTGGCTCAAGGGGAGCAAGAGCTGAACAAGACCCAAACC CAACGCCTTGTCAACGAGGAAAACGGGATCGACGAGGAGGGAAAAGGGGT AGCGTTCGGAAAAGTACAAGAGAGTAGGACGGAAGGCATTGACAACCGAG AAGAAAGCGACATCGGTTTGAAGGAGCGGGATTTGCAGTTCCGAGTCCCA ACAGATGGCGATGGCGACAATGACGACGGTGCTCGCGAGTACTCAAGCCT CGACATGAATTTTGATTATGCAGTTTGTTCTCTAGACGACGACAGAAACC CTTCGCCAGAGAAGTTTCTCGGCCGAACAGATAGCGTAGAACTTAGCAGC AACGACTTATTTTCACCACAACCCTTCGGAGCACCCGAGAAAGAGCTCCA TGTTGGTGATGAGGTGCAGCTGGAACAGCAGTCGCCGCACACGCCCCACG GTGATCGGTGCAGGACCAGGGGGAGGCAAAAGGAACGCGATATTCGAGGG GCAAGATCGCGAACTTTCAAACCGAGATATCGAAGCCAGGAAAGCGATGG GCGAACAAGGCTGCGAGCAAGCAGCCAAAGCCGTGCGGACGCCGGGGGGG CGGCGAGCATACGGCGGCAGCGACAGGAGCGCTTGATTCAGCAGCTCACG CGTGACAACGGGGTGTTGCAGCGCAAAGTAGCGGGCTACCAGCTTGCGTT GCAGTTATCCGCCGATGAAGACGACTTTTCCACGAGCCCGTCCTTCTCCG CCGCCATGCAGCTGCAGCAAGCCGCACCACCGGCCTTCCCGCGCGGTGGG GGTACGCCCGCGCCATCCCCCCGCGTCGCCAGGGGCTGGAAGCACCGAAA TCCACCGCCGCCTGGCCGCATCTCTCCTGTCGAGCGCAACCTCTCGTACA CTACCCTGGTGCGGCAGCTTGACATGGGTGGGAGGCGAGCGAGGACGCTG AAGCGGGAGAACGAGGCTCTAGGGGCGAGGGTGAACGAGCTCGAGAGCGG GGCGGTCCTCAGAGCGACGCAGTCGAGGCTCTCAGAGCGGGACGAAGAAA TAGTGGCACTCCGAGAGGAACTGTCCGTTATGAACCGACTTGCTCGAGCT CAAGACCGCAAGTTCGAGGGATGCCACGAGTACGCCCTCGCTCGTCGACT GTGGCTAACAGAGGAGGAGCTACGGACAGCTCGCTCAACCATATCCACAC TGGGAGCCGAGGAGCAAGGAGGTAGAAGTAGTTTC back to top
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