mRNA_Ecto-sp8_S_contig11014.1386.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11014.1386.1
Unique NamemRNA_Ecto-sp8_S_contig11014.1386.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Match: D8LMW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW7_ECTSI)

HSP 1 Score: 661 bits (1705), Expect = 4.890e-234
Identity = 371/438 (84.70%), Postives = 375/438 (85.62%), Query Frame = 2 
Query:    2 SILHRPDDPMVFCQDLLERSIGERDGKTAAYDPTCPARLLKECYDDAMNAADEHGIIHPEACPHPVTGRRVDGDVSAATAAATGGAAKDTTSSGSSGDGG-PTGDPAPAPGDDSSVQPVPATTSSHTPSXXXXXXXXXXXXXXXX-DRASGDVGQGASTGVGGSSVRQAAGEVIRPLLLGVIRELCEIERPEVAAAAVVAGACKAVNAGRAALFKLIGKDGTLQEMGSGTSNQRIVEHGKGLVGRTAAAAVAAGTGTEGRGAGAILTTKDPSKEDGFCAEVDLPPCEDPARETADWSTSGLICGPVTDGLGETWGVLVVAEPLGDGGAFDEENADAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGH 1309
            SILHRPDDPMVFC+DLLERSIGERDGKTAAYDPTCPARLLKECYDDAMNAADEHGIIHPEACPHP TGRRVDGDVSAA                       PTG+PA                      XXXXXXXXXXXXXX   D A GDV         GSSVRQAAGEVIRPLLLGVIRELCE+ERPEVAAAAVVAGACKAVNAGRAALFKLIG+DGTLQEMGSGTSNQRIVEHGKGLVGRTAAAAVAAGTG EGRGAGAILTTKDPSKEDGFCAEVDLPPCEDPARETADWSTSGLICGPVTDGLGETWGVLVVAEPLGDGGAFDEE  DAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGH
Sbjct:   27 SILHRPDDPMVFCRDLLERSIGERDGKTAAYDPTCPARLLKECYDDAMNAADEHGIIHPEACPHPATGRRVDGDVSAAXXXXXXXXXXXXXXXXXXXXXXXPTGNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGDEAPGDVXXXXXXXXXGSSVRQAAGEVIRPLLLGVIRELCELERPEVAAAAVVAGACKAVNAGRAALFKLIGEDGTLQEMGSGTSNQRIVEHGKGLVGRTAAAAVAAGTGAEGRGAGAILTTKDPSKEDGFCAEVDLPPCEDPARETADWSTSGLICGPVTDGLGETWGVLVVAEPLGDGGAFDEEKVDAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGH 464
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Match: A0A835YT85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT85_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.600e-34
Identity = 101/283 (35.69%), Postives = 148/283 (52.30%), Query Frame = 2 
Query:  464 ASTGVGGSSVRQAAGEVIRPLLLGVIRELCEIERPEVAAAAVVAGACKAVNAGRAALFKLIGKDGTLQEMGSG-TSNQRIVEHGKGLVGRTAAAAVAAGTGTEGRGAGAILTTKDPSKEDGFCAEVDLPPCEDPARETADWSTSGLICGPVTDGLGETWGVLVVAEPLGDGGAFDEENADAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATND-NLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSG 1306
            A T  GG+     A E     L G + ++ E    E  A  +VA A KA NA +A ++   G   +L   G+G  + ++ +  G G++G  A    A G               D       CA + + P   P    A   +S +       G+G   GVL V    G GG F    A AF     MAA  M ++++Y + +  C K+R+M+E+I ATN  ++GV+H+LYTI+ CLP +C+A KCT F+VD++  +LW VQGE+N+R+PK++GIAGAVATSG
Sbjct:  142 AVTASGGAECDGQAVEACLMPLAGALNDVSEGCTIEAMAEGIVACAMKAFNAEQAVMYLAQGPSASLVRSGAGPVAAKQTLPAGTGVLGAAALPGAALG---------------DTPTASLMCAPLPVAP---PVSSAAAARSSSV-------GIGAQAGVLAVGNRRG-GGGFRAGEARAFAAFCAMAAAVMSHADIYERKERECVKYRSMMEIITATNQQDMGVHHILYTISACLPRVCDAHKCTTFIVDEEHQELWAVQGEINIRMPKDRGIAGAVATSG 398
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Match: A0A6H5K4B7_9PHAE (GAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.510e-30
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 2 
Query: 1133 VNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGH 1309
            VNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGH
Sbjct:    8 VNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGH 66
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Match: A0A813BXV4_9DINO (Pde11 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BXV4_9DINO)

HSP 1 Score: 114 bits (286), Expect = 1.250e-24
Identity = 76/246 (30.89%), Postives = 128/246 (52.03%), Query Frame = 2 
Query:  587 VVAGACKAVNAGRAALFKLIGKDGTLQEMGSGTSNQRIVEHGKGLVGRTAAAAVAAGTGTEGRGAGAILTTKDPSKEDGFCAEVDLPPCEDPARETADWSTSGLICGPVTDGLGETWGVLVVAEPLGDGG------AFDEENADAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSG 1306
            +++ AC  ++A RA +FK+      L+ M +  ++   V  GKG+ G  AA+             G +   KD  ++  F +  D         + + + T  ++  PV DG G   GVL V   L D         F + + +    ++  A +++ N+E+Y   +   EK R +IEVI++   NLG+N L++TI +  P + +A++CT FL +    +LW +QG+V++R+P +KGIAGAVATSG
Sbjct:   12 IISEACGILSADRATIFKMDETGEQLEIMVAEGASGIRVPVGKGIAGTVAAS-------------GELENIKDAYEDARFDSTFD---------KKSGYRTESVLAAPVRDGQGAIVGVLQVINKLKDPKNKDSRIPFSDMDVEVANILAAQAGIALRNAELYKTSRRSQEKVRALIEVIKSMYSNLGINSLMFTITQRAPALVDAERCTFFLANHKSKELWAMQGDVDIRIPIDKGIAGAVATSG 235
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Match: A0A7S1C5Y3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5Y3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.480e-22
Identity = 78/260 (30.00%), Postives = 122/260 (46.92%), Query Frame = 2 
Query:  527 LLGVIRELCEIERPEVAAAAVVAGACKAVNAGRAALFKLIGKDGTLQEMGSGTSNQRIVEHGKGLVGRTAAAAVAAGTGTEGRGAGAILTTKDPSKEDGFCAEVDLPPCEDPARETADWSTSGLICGPVTDGLGETWGVLVVAEPLGDGGAFDEENADAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSG 1306
            L+   R + +   P  A + +++  C  + A RA LFKL    G L+ M +  +    +  G G+ G  A       TGT        +   D   +  F    D         +   + T  ++C PV D      G +         G F E + +    +   A V++ N+++Y       EK R ++EVI A +DNLG+N L++TI +    I +A +CT FL +    +LW +QGEV++R+P +KGIAGAVATSG
Sbjct:  108 LIVASRSIAKTLDPFAATSNIISETCNLLEADRATLFKLDPARGALKLMVAEGAEDIYLPLGTGIAGTVAE------TGTP-------INISDAYSDARFDRSHD---------DKTGYRTKSILCVPVRDAEDNVVGCIQAINSAS--GEFSEIDEEILGILCAQAGVALRNADLYTLAVKSHEKVRGLLEVIRAMHDNLGINSLMFTITQRAHTIVDADRCTFFLANHASKELWAMQGEVDIRIPMDKGIAGAVATSG 343
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Match: A0A6U4IFQ7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IFQ7_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.160e-21
Identity = 50/142 (35.21%), Postives = 87/142 (61.27%), Query Frame = 2 
Query:  881 WSTSGLICGPVTDGLGETWGVLVVAEPLGDGGAFDEENADAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSG 1306
            + T  ++CGPV    GE  GVL V       G F E +      + + A + + N++++ Q +    +FR+++++I A   ++G++ LL+T+ +  P + +A + T FLVD+  D+LW +QG+VNMR P+ +GIAG+VAT+G
Sbjct:  212 YRTHSILCGPVKKPSGEIIGVLQVINKAE--GTFTETDEGILEILCSQAGICLQNADLFSQTERSRSRFRSLLDIINALQGDMGLSSLLFTMTREAPRVVDADRATIFLVDERDDELWSMQGDVNMRFPRGQGIAGSVATTG 351
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Match: A0A7S1UDT6_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDT6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.600e-21
Identity = 50/142 (35.21%), Postives = 87/142 (61.27%), Query Frame = 2 
Query:  881 WSTSGLICGPVTDGLGETWGVLVVAEPLGDGGAFDEENADAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSG 1306
            + T  ++CGPV    GE  GVL V       G F E +      + + A + + N++++ Q +    +FR+++++I A   ++G++ LL+T+ +  P + +A + T FLVD+  D+LW +QG+VNMR P+ +GIAG+VAT+G
Sbjct:  212 YRTHSILCGPVKKPSGEIIGVLQVINKAE--GTFTETDEGILEILCSQAGICLQNADLFSQTERSRSRFRSLLDIINALQGDMGLSSLLFTMTREAPRVVDADRATIFLVDERDDELWSMQGDVNMRFPRGQGIAGSVATTG 351
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Match: A0A1V9ZE78_9STRA (Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZE78_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.220e-18
Identity = 59/242 (24.38%), Postives = 121/242 (50.00%), Query Frame = 2 
Query:  587 VVAGACKAVNAGRAALFKLIGKDGTLQEMGSGTSNQRIVEHGKGLVGRTAAAAVAAGTGTEGRGAGAILTTKDPSKEDGFCAEVDLPPCEDPARETADWSTSGLICGPVTDGLGETWGVLVVAEPLGD--GGAFDEENADAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSG 1306
            ++   CK +N  RA LFKL      L    +  + +  V  GKG+ G  A++             G ++   +   +  F ++ D+            + T  ++C PV +G G   GV+     +G+   G F + + +    ++  A +++ N++ +       +K   ++++++A + +LG+N L++T+   +  + ++ +C+ +L+D +K +LW +QGEV++R+P N GI+GAVA  G
Sbjct:  132 IIKQTCKILNCERATLFKLDAARHVLNLSVAEGAAEISVPIGKGIAGIVASS-------------GKLINIANAYADPNFDSQYDM---------QTGYHTRSILCVPVRNGNGNIVGVMQALNRVGNEKDGGFTDMDEEVMTILAAQAGIALQNAQNHKTALQAQKKVTEVLDIVKAMHSDLGINSLIFTVTHRIQTLIDSDRCSLYLLDKNKGELWTLQGEVDIRIPSNMGISGAVAEEG 351
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Match: A0A067CR89_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CR89_SAPPC)

HSP 1 Score: 97.4 bits (241), Expect = 3.040e-18
Identity = 63/243 (25.93%), Postives = 123/243 (50.62%), Query Frame = 2 
Query:  587 VVAGACKAVNAGRAALFKLIGKDGTLQEMGSGTSNQRIVEHGKGLVGRTAAAAVAAGTGTEGRGAGAILTTKDPSKEDGFCAEVDLPPCEDPARETADWSTSGLICGPVTDGLGETWGVLVVAEPLGD--GGAFDEENADAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGH 1309
            ++   CK +N  R+ LFKL     TL    +    +  V  GKG+ G      V A TG        ++   +   +  F ++ D+            + T  ++C PV +G G   GV+     +G+   G F + + +    ++  A +++ N++ +       +K   ++++++A + +LG+N L++T+A  +  +  A +C+ +LVD +K +LW +QGEV++R+P ++GI+GAVA  G+
Sbjct:  134 IIKQTCKILNCERSTLFKLDAARQTLNLSVAEGVAEISVPVGKGIAG------VVASTGK-------LVNIANAYADPNFDSQYDM---------QTGYHTRSILCVPVRNGHGAIVGVMQALNRVGNEKDGGFTDMDEEVMTILAAQAGIALQNAQNHKTALLAQKKVTEVLDIVKAMHGDLGINSLIFTVAHRIQTLIGADRCSLYLVDKNKGELWTLQGEVDIRIPWHQGISGAVAQEGN 354
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Match: A0A3R7NGH4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NGH4_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.060e-18
Identity = 70/260 (26.92%), Postives = 127/260 (48.85%), Query Frame = 2 
Query:  539 IRELCEIERPEV----AAAAVVAGACKAVNAGRAALFKLI-GKDGTLQEMGSGTSNQRIVEHGKGLVGRTAAAAVAAGTGTEGRGAGAILTTKDPSKEDGFCAEVDLPPCEDPARETADWSTSGLICGPVTDGLGETWGVLVVAEPLG--DGGAFDEENADAFRTVSTMAAVSMHNSEVYGQGQTGCEKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVA 1297
            + E C I   E+    A  +++  AC  +NA RA LF      D  + ++  G ++ R+   GKG+ G  AA              G  +   D   +  F ++ D         +   + T  ++C PV +G     GV+ V   +      +F +E+ +    ++  A V++HN++ +       E+ ++++ +I+  + +LG   L++TI+  +     + +CT ++VD  K++LW +QGEVN+RVP N+GIAGAVA
Sbjct:   36 VSEACRIIGSELDPTEATKSIIKQACNVLNAERATLFIYERATDMLVLKVSEGATDIRV-PFGKGIAGTVAAT-------------GKAMNISDAYTDPNFDSQYD---------QRNGYQTKSMLCVPVRNGANNIVGVMQVLNKISVDKKQSFSDEDEEILAIMAAQAGVALHNADTHAVACIARERVKDVLSIIQDMHRDLGFISLMFTISTRVQRFVNSDRCTLYIVDRAKNELWTLQGEVNIRVPLNQGIAGAVA 272
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11014.1386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMW7_ECTSI4.890e-23484.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YT85_9STRA1.600e-3435.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K4B7_9PHAE1.510e-30100.00GAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A813BXV4_9DINO1.250e-2430.89Pde11 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S1C5Y3_9STRA6.480e-2230.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6U4IFQ7_9STRA2.160e-2135.21Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1UDT6_9STRA5.600e-2135.21Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A1V9ZE78_9STRA1.220e-1824.38Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase n=... [more]
A0A067CR89_SAPPC3.040e-1825.93Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A3R7NGH4_9STRA3.060e-1826.92Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11014contigEcto-sp8_S_contig11014:1458..6488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score643.7
Seed ortholog evalue6.3e-182
Seed eggNOG ortholog2880.D8LMW7
Model size1309
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
Ec32 ortholog descriptionGAF domain-like
Ec32 orthologEc-02_003910.1
Cds size1281
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11014.1386.1prot_Ecto-sp8_S_contig11014.1386.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11014 1486..6488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143187.8345692-UTR-Ecto-sp8_S_contig11014:1457..14851681143187.8345692-UTR-Ecto-sp8_S_contig11014:1457..1485Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11014 1458..1485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143187.8464198-CDS-Ecto-sp8_S_contig11014:1485..15811681143187.8464198-CDS-Ecto-sp8_S_contig11014:1485..1581Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11014 1486..1581 +
1681143187.8565893-CDS-Ecto-sp8_S_contig11014:2361..28441681143187.8565893-CDS-Ecto-sp8_S_contig11014:2361..2844Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11014 2362..2844 +
1681143187.8642483-CDS-Ecto-sp8_S_contig11014:3482..35451681143187.8642483-CDS-Ecto-sp8_S_contig11014:3482..3545Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11014 3483..3545 +
1681143187.8716235-CDS-Ecto-sp8_S_contig11014:4397..46091681143187.8716235-CDS-Ecto-sp8_S_contig11014:4397..4609Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11014 4398..4609 +
1681143187.878824-CDS-Ecto-sp8_S_contig11014:4981..51071681143187.878824-CDS-Ecto-sp8_S_contig11014:4981..5107Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11014 4982..5107 +
1681143187.8869288-CDS-Ecto-sp8_S_contig11014:5468..55921681143187.8869288-CDS-Ecto-sp8_S_contig11014:5468..5592Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11014 5469..5592 +
1681143187.8991218-CDS-Ecto-sp8_S_contig11014:6311..64881681143187.8991218-CDS-Ecto-sp8_S_contig11014:6311..6488Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11014 6312..6488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11014.1386.1

>prot_Ecto-sp8_S_contig11014.1386.1 ID=prot_Ecto-sp8_S_contig11014.1386.1|Name=mRNA_Ecto-sp8_S_contig11014.1386.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=427bp
MVFCQDLLERSIGERDGKTAAYDPTCPARLLKECYDDAMNAADEHGIIHP
EACPHPVTGRRVDGDVSAATAAATGGAAKDTTSSGSSGDGGPTGDPAPAP
GDDSSVQPVPATTSSHTPSTPAGAGGGGGGGGGGGDRASGDVGQGASTGV
GGSSVRQAAGEVIRPLLLGVIRELCEIERPEVAAAAVVAGACKAVNAGRA
ALFKLIGKDGTLQEMGSGTSNQRIVEHGKGLVGRTAAAAVAAGTGTEGRG
AGAILTTKDPSKEDGFCAEVDLPPCEDPARETADWSTSGLICGPVTDGLG
ETWGVLVVAEPLGDGGAFDEENADAFRTVSTMAAVSMHNSEVYGQGQTGC
EKFRNMIEVIEATNDNLGVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQ
LWVVQGEVNMRVPKNKGIAGAVATSGH
back to top

mRNA from alignment at Ecto-sp8_S_contig11014:1458..6488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11014.1386.1 ID=mRNA_Ecto-sp8_S_contig11014.1386.1|Name=mRNA_Ecto-sp8_S_contig11014.1386.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5031bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11014:1458..6488+ (Ectocarpus species8 EcLAC_412)
ATCTATCCTACACCGCCCGGACGATCCGATGGTATTCTGTCAGGACTTGC
TGGAAAGAAGCATTGGAGAACGGGACGGGAAAACGGCCGCGTACGACCCG
ACCTGCCCGGCTCGGTTGCTGAAGGTAACTGTTAACTGGACCAAGCAATG
CGGGTCTGTTTTGGTTGGCAGGCCTATCGGCAATAATAAGACCAGGCGAA
TGTTCTAGGCAAGCACGCGAAGGCCAACCTACATTGACGGGTCTCCACTC
TGATAGTGCATCAGCCGCGTTCGTCGGAAAGACGTCGACGCACACGCACG
TTTTCGCTCGAGGAGTGCGCGCTGGTGGTTGGGTGAGCGAGTGTCCACCG
TCTTTCGTGCCATGGGGGCTGGGGAGTAAGGACAGTCATCAGGACATGTG
ACTCGAATCGGATTGTTGTAATCAAGTCCTCCACGTTCGAAAAAGAAGGA
TTTGCCGCTAGCCCTTGATCTCGAACCACACTCACTGAGAAGAAGCCTCG
AACGAAACCGAACGATCCGTCGCAATATCGAAAAAAACAAAGGAATGCTT
TTGTCTGCACAAATGGCAACGCCACAAAGATGGACGAAACAAGGTTGTTT
GATATGCCGCCCCCTTTTCCTTGCTGCTTAAGCTATGTTAATTGCGGCAC
CTGTCGGCACCTGTCGGGAGGCCCGGCACTTAAGCCCCGTGCCCAGACAC
AAGCAAAATCCAAGACAAAACTGCCGCGTTCACGGCAACGGACATTTCAC
TTACCCCCGGGCCACAAAAGCGTCACCTGTACGGACTTTACCATTTGACA
CGCTAATTGATGCTTTTAGGAACTGATGATGCTTTCCGTAACCCATCTCC
TAGCACCGAACCGCCGACAACACCACAACACGCCGGCAAAACACACACAC
GCAGGAGTGCTACGACGACGCGATGAACGCGGCGGACGAGCACGGCATCA
TCCACCCGGAGGCATGCCCCCACCCAGTCACCGGGAGAAGAGTGGACGGT
GATGTCTCCGCCGCCACCGCCGCCGCCACGGGTGGGGCCGCGAAGGACAC
GACAAGCAGCGGCAGCAGCGGCGACGGCGGCCCGACCGGCGACCCGGCAC
CAGCACCCGGCGACGACTCTTCTGTCCAACCCGTGCCCGCCACCACGAGC
AGTCACACCCCGTCTACACCAGCAGGAGCAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGACAGAGCGTCCGGGGATGTTGGGCAGGGAGCGTCAA
CGGGGGTCGGGGGGAGTTCGGTACGTCAAGCCGCGGGCGAAGTGATTCGA
CCGCTTCTGCTCGGGGTGATTCGGGAGCTGTGTGAAATCGAGAGACCTGA
GGTTGCCGCGGCGGCCGTGGTGGCGGGAGCGTGCAAGGTGACGTGATTAT
TCTGGTCAACTTAAACAAAAACAAATTCTCGGGGATGGGAGAGGCGGGGA
AGAGGGCAGAGGTCGCTCGCGTGAGGGATCGGGTGTATGCGAGTATGGAG
CAACGTACCACGATCCGTCCGGTTACATCAAGCAACGGAATCGGCGTCCT
TCTCAGGAGTAAACCCATCACCCCCATCGCCATCCGGGGCCCAACGTAGT
GTTCTGGCGGGTCTGAACCCAAACTTCCGGAAGCCGTCGTTTTGTCACCT
GTCACCTGCACGTGACGGCAGCACACCTCGAACCTTCTTTTGTTCCAATC
CCCTCCCCCCATGCAGCAGTTGTTATCGTAGTGTTGTTTTGTCCTCGTGC
ACCATCAGAGCGTTTATGGCAACACGGCTTCCACCTGCTACACCGTTACC
AGCCGCTAGCCTCTGAAGTTCTCGTCGGGGAGTCCTTCCCGCAGCAGGGG
AAACACGGTATGTTGCGTACGCGTCAGAGACAAGTGCTTGGTGCCATCGC
TGTAGGCACCTCCTACCATCTCCCATTCAAGAAAAACAGCCAGCGCAACG
TAGAGCACGAGGTATCTTTGTCCATTCACTGTCGTCGTCCTCCCGGTTTC
GTCACCTCTCGTCCCTGTGCTGCAGGCCGTCAACGCTGGTCGGGCCGCGC
TGTTTAAGTTGATCGGCAAGGACGGCACCTTACAGGAGGTGAAGTACTAC
ATATCTAATCCGTCGCCCGAGCCAAGATAGGGTCATCCAGCTGGACTTGG
GGTCGAGTAAATCGCAAATTCCCGCCAACAGTTTTTTTCGAGAATCAATG
GCGGTGCTGCTCGAGTGACCAATGCATCAGGGTCCGGGGTTCGTTCTTGA
ATGTAGGAGTGCGGCCAATGCCTCGTTTGTAGCGTTGACGGACAACGTGT
TTTGTGGGATAGGTAAAACATCACGTTTTGGCCGATGACGGCCCACGAAT
GATGACGTCGCCCCGCCCACGTGTCCAACCTATCAGCGGAAGTGGCAATG
AACTACTCTAGTTACATACTTTGGCTGCTTTGGGATAGGGAACGTCTTGT
TGGTTCGGACGACGCTCCAAGACGTTTGACGACTCCGGCGCGTCATGACC
GGGAGAAAAGTCCGGCTGCTGCATCTCCGTGTGTCGACTGCCAAACCTCG
TCCCGACGGTACGGGGGGAAATATACGCGTCGGCTGAATACCGGCAGCCA
GTTTGTCCTTTGCAGCCACCCACCATGGCGTGCAGGATGGCTAGAAAACC
AGCTCCAATGGGCACCTGCCCTAAACTTTGGAACATCGGCTGCACAGCCG
AACAAGTCATGTAGCAGATAACGAGGTTCCCTCTGTGAATATGAGTGTAC
GTGTCAGTGAAAATGATGTGCCTCGTGAGCCTTCTGGAGGCATTGTGGTG
CCCGACTCGCCACGTGCTCACCGTCGGCTTGGTGCAGATTAGGCCAAGGG
ACAAACGGCGGCATCACCCGTTTGATTGAACACGGCATGGTGACACAGCA
ACCGTTCGACTGACCTAACTCGCCGGACCTCTAACCGCAGATGGGCAGCG
GAACCTCGAACCAGCGGATCGTCGAGCACGGCAAAGGCTTGGTGGGGCGG
ACGGCGGCGGCGGCGGTTGCAGCAGGAACGGGGACCGAGGGGCGTGGTGC
TGGGGCCATCCTGACGACGAAAGATCCGTCCAAGGAAGATGGGTTTTGCG
CAGAGGTGGACCTGCCGCCTTGTGAAGATCCGGCGCGAGAGACAGCAGAT
TGGTGAGAGCAAGAGATGAGGAGCGCTAAGCACGGCGGTCTTGCGACAGA
TGTGTCATGGGGTTGTGTGCTTTGTTGACGCTCTATCTTACCACCGCCGG
GTTGTCTCAAGTTTGGGGGAAGTTAGAGAGAGAACGATGAACCCGCGATC
GTTCGATTGGTAGTTGGTCGTCTTCTTCACATGTGCCACACACGCAACAC
CTACTTCATGGCTTTGACAGATGACACGTGGGAACACCGATCTATGCAGG
TCAGGTTCCCACAAGACGCACGCCGCACCTCGCTACCGTACGGTCGTACC
TAGGACAACGGTGTCCCCTGTGCACCTCTATTAAATTCCTTCGGTCCCGC
GTTCAACCCCGCTTTTGCGAGCAGGAGCACGTCGGGACTGATCTGCGGTC
CTGTCACGGACGGCTTGGGCGAAACTTGGGGGGTGCTGGTCGTGGCGGAG
CCTTTGGGCGACGGGGGCGCGTTCGACGAGGAAAACGCCGACGCCTTCAG
GTCCGTTCGTCTCTATTCCCCTTTCCGAATCCTTGCGGGGCGAAGACCAA
ACGACTACGGCATGCTACCGCCGCAAGCCAACGGGGGTTGTGGGAGTTTT
TTCCCGTGTCTCACGAAATGCCCGACCATTCTCCTTTTTCGAGCTGGAAC
CATACCAAATCTCCCTCAGATAGCATAGCTTAACCGCGAACACGAACTGA
ACGTAAGCCCCCTCTGTCAGGTAAAAGGGGCTGGCCCATTAGTCCGCACC
GACAGTGTGGTCTATAGGACTAGCCCCACTAACACAGCAAATAAACATCT
CGCGGATTCGATTCCCGGCACCCACAATGATTGTATTTACGCGCGCGCCA
TGCGTGAACAGGACCGTGTCTACGATGGCTGCGGTATCGATGCATAACTC
GGAGGTATACGGGCAGGGCCAGACCGGGTGCGAGAAGTTCCGAAACATGA
TCGAGGTCATCGAGGCCACGAATGACAACCTCGGGGTAAGCATGGGAACT
TCCTACTATTGTTGCGTGTTAGAAGGGCTGGCCGCTTCGCCATCTCAAAC
GATAATCCAAAGGGAACATTGCCGTGCCCCACAGTACAGCGACAAATGGA
GACGCGTGCCCACAGCCCTTGTCGGTCCCGTAGCGCGTGGTAGAGGTGTT
TCGATGAGTGGAGGACCGTCCTTTCCAGTCCGTGGAGGCCAAATAGACAC
TGAAAGGTGTCCGAAGCTTACTGCTGTACCCCTCGAATTGGTGGTCGTCT
CATTTCGAGAAACAATAACGTCAGTGCTGGTAGCAAAACGTTGCGTCTTG
GGAGGTCGACTTCGTGGACAACATCCGTGAAAAAACGAAATACGGCGTAG
GCAAGTAGTCGATGTGGTGAACCAAGCGGCGCCTACAAGCTCCCTCATCT
AGTCACTTTGTTGCCATCTGTCTCTCACTAGGGTCACCACCACCACCAGT
AACACCGTACCTACCTGTGACACGTCCACCTCACCGTCAATATCCCAGCA
ACAACCTCATACCCAATCACGCTAGCATCATCAGCTCCATCTCCCGCACC
AGCATCAGCACCAACGGCACGCCACCATAAAGCCATAAACACAAGCAGAA
CCGTTTGCCAGCAAACAACGCCATCAGCAACACCACCACCGAAATGGTAA
AACCACGGCGGGGTTCTCGACCAACCAACAATAAATGGCCGATTTCCCCC
CAAGGTGAACCACCTGCTCTACACGATAGCCAAGTGCTTGCCGGTCATCT
GCGAGGCGCAGAAGTGCACCTGCTTCCTCGTGGACGACGACAAGGACCAG
CTGTGGGTAGTCCAGGGGGAGGTCAACATGAGGGTGCCCAAGAACAAGGG
TATCGCGGGCGCGGTCGCCACCTCGGGGCAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11014:1458..6488+

>mRNA_Ecto-sp8_S_contig11014.1386.1 ID=mRNA_Ecto-sp8_S_contig11014.1386.1|Name=mRNA_Ecto-sp8_S_contig11014.1386.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1281bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11014:1458..6488+ (Ectocarpus species8 EcLAC_412)
ATGGTATTCTGTCAGGACTTGCTGGAAAGAAGCATTGGAGAACGGGACGG
GAAAACGGCCGCGTACGACCCGACCTGCCCGGCTCGGTTGCTGAAGGAGT
GCTACGACGACGCGATGAACGCGGCGGACGAGCACGGCATCATCCACCCG
GAGGCATGCCCCCACCCAGTCACCGGGAGAAGAGTGGACGGTGATGTCTC
CGCCGCCACCGCCGCCGCCACGGGTGGGGCCGCGAAGGACACGACAAGCA
GCGGCAGCAGCGGCGACGGCGGCCCGACCGGCGACCCGGCACCAGCACCC
GGCGACGACTCTTCTGTCCAACCCGTGCCCGCCACCACGAGCAGTCACAC
CCCGTCTACACCAGCAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGACAGAGCGTCCGGGGATGTTGGGCAGGGAGCGTCAACGGGGGTC
GGGGGGAGTTCGGTACGTCAAGCCGCGGGCGAAGTGATTCGACCGCTTCT
GCTCGGGGTGATTCGGGAGCTGTGTGAAATCGAGAGACCTGAGGTTGCCG
CGGCGGCCGTGGTGGCGGGAGCGTGCAAGGCCGTCAACGCTGGTCGGGCC
GCGCTGTTTAAGTTGATCGGCAAGGACGGCACCTTACAGGAGATGGGCAG
CGGAACCTCGAACCAGCGGATCGTCGAGCACGGCAAAGGCTTGGTGGGGC
GGACGGCGGCGGCGGCGGTTGCAGCAGGAACGGGGACCGAGGGGCGTGGT
GCTGGGGCCATCCTGACGACGAAAGATCCGTCCAAGGAAGATGGGTTTTG
CGCAGAGGTGGACCTGCCGCCTTGTGAAGATCCGGCGCGAGAGACAGCAG
ATTGGAGCACGTCGGGACTGATCTGCGGTCCTGTCACGGACGGCTTGGGC
GAAACTTGGGGGGTGCTGGTCGTGGCGGAGCCTTTGGGCGACGGGGGCGC
GTTCGACGAGGAAAACGCCGACGCCTTCAGGACCGTGTCTACGATGGCTG
CGGTATCGATGCATAACTCGGAGGTATACGGGCAGGGCCAGACCGGGTGC
GAGAAGTTCCGAAACATGATCGAGGTCATCGAGGCCACGAATGACAACCT
CGGGGTGAACCACCTGCTCTACACGATAGCCAAGTGCTTGCCGGTCATCT
GCGAGGCGCAGAAGTGCACCTGCTTCCTCGTGGACGACGACAAGGACCAG
CTGTGGGTAGTCCAGGGGGAGGTCAACATGAGGGTGCCCAAGAACAAGGG
TATCGCGGGCGCGGTCGCCACCTCGGGGCAC
back to top