mRNA_Ecto-sp8_S_contig11009.1380.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11009.1380.1
Unique NamemRNA_Ecto-sp8_S_contig11009.1380.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Match: A0A6H5JHZ0_9PHAE (GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ0_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.550e-42
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAVT 213
            IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAVT
Sbjct:  216 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAVT 286
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Match: A0A836CRD5_9STRA (Glycosyltransferase family 20-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRD5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.490e-31
Identity = 56/68 (82.35%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPD 204
            IYRILP REQILEG+L SD++GFQTYDYARHFLSTVESLLDA+CS QGVE+NGHFA+  ICPVGIDP+
Sbjct:  577 IYRILPNREQILEGLLGSDLLGFQTYDYARHFLSTVESLLDADCSRQGVEYNGHFASAAICPVGIDPE 644
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BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Match: A0A7S3NKN0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKN0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.410e-24
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAV 210
            +YR+LPYRE+IL GIL++D+VGFQTYDYARHFLS+ E +L    SP  +EH+GH   + +CPVGI+PD V
Sbjct:  350 LYRMLPYREEILRGILAADLVGFQTYDYARHFLSSCEIVLGIETSPDRIEHDGHQTRICVCPVGIEPDVV 419
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BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Match: G0VJT0_NAUCC (Trehalose-6-phosphate synthase n=1 Tax=Naumovozyma castellii (strain ATCC 76901 / BCRC 22586 / CBS 4309 / NBRC 1992 / NRRL Y-12630) TaxID=1064592 RepID=G0VJT0_NAUCC)

HSP 1 Score: 100 bits (250), Expect = 2.530e-23
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAVT 213
            IYRILP R++IL+G+LS D+VGF TYDYARHFLS V+ +L+ N  P GVE+NGHF NV   P+GID D  T
Sbjct:  204 IYRILPVRQEILKGVLSCDLVGFHTYDYARHFLSAVQRVLNVNTLPNGVEYNGHFVNVGAFPIGIDVDKFT 274
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Match: A0A835Z8I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8I3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 6.010e-23
Identity = 42/71 (59.15%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAVT 213
            IYRILP R+ +LEG+LS+D+VGF TYDYARHFLS    +L+  CSP+GV++N HF ++ + P+GIDPD V+
Sbjct:  197 IYRILPVRKPLLEGMLSADLVGFHTYDYARHFLSACSRVLEVECSPRGVDYNNHFMSLGVFPIGIDPDHVS 267
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Match: H2AU51_KAZAF (Trehalose-6-phosphate synthase n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2AU51_KAZAF)

HSP 1 Score: 98.2 bits (243), Expect = 2.230e-22
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAVT 213
            IYRILP R++IL G+LS D++GF TYDYARHFLS V+ +L+ N  P GVE++GHF NV   P+GID D  T
Sbjct:  193 IYRILPVRQEILRGVLSCDLLGFHTYDYARHFLSAVQRVLNINTLPNGVEYHGHFVNVAAFPIGIDVDTFT 263
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Match: A0A0C7MNZ4_9SACH (Trehalose-6-phosphate synthase n=5 Tax=Lachancea TaxID=300275 RepID=A0A0C7MNZ4_9SACH)

HSP 1 Score: 98.2 bits (243), Expect = 2.340e-22
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAVT 213
            IYRILP R++IL G+LS D+VGF TYDYARHFLS+V+ +LD N  P GVE++G F NV   P+GID D  T
Sbjct:  205 IYRILPVRQEILRGVLSCDLVGFHTYDYARHFLSSVQRVLDVNTLPNGVEYDGRFVNVGAFPIGIDVDTFT 275
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Match: A0A7R9U234_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U234_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.850e-22
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAVT 213
            +YRILPYRE+IL GIL+SD++GFQTY YAR+F  T ES+L  + SP  VE  GH+ANV I P+GI+P   T
Sbjct:  245 LYRILPYREEILRGILASDLIGFQTYQYARYFFQTCESILGLDWSPVAVEDAGHYANVCIIPIGINPPEYT 315
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Match: A0A8J2X0D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0D0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.360e-22
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAV 210
            +YR LP+RE+IL G+L++D++GFQTYDYARHFLS+ E +L    +P  VEH GH   V +CPVGI+P+ V
Sbjct:  228 LYRTLPFREEILRGLLAADLLGFQTYDYARHFLSSCEMVLGLETAPDHVEHEGHLTRVCVCPVGIEPEVV 297
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Match: A0A0P1A8Y1_PLAHL (-trehalose-phosphate synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8Y1_PLAHL)

HSP 1 Score: 97.1 bits (240), Expect = 7.300e-22
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPD 204
            +YRIL YRE+IL GIL +D++GFQTY+YARHF S    LL    S +GV++NGHFA VTICPVGID D
Sbjct:  256 LYRILNYREEILTGILGADLIGFQTYEYARHFQSACVRLLGLESSHKGVDNNGHFARVTICPVGIDAD 323
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11009.1380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHZ0_9PHAE1.550e-42100.00GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CRD5_9STRA3.490e-3182.35Glycosyltransferase family 20-domain-containing pr... [more]
A0A7S3NKN0_9STRA9.410e-2461.43Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
G0VJT0_NAUCC2.530e-2363.38Trehalose-6-phosphate synthase n=1 Tax=Naumovozyma... [more]
A0A835Z8I3_9STRA6.010e-2359.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H2AU51_KAZAF2.230e-2260.56Trehalose-6-phosphate synthase n=1 Tax=Kazachstani... [more]
A0A0C7MNZ4_9SACH2.340e-2261.97Trehalose-6-phosphate synthase n=5 Tax=Lachancea T... [more]
A0A7R9U234_9STRA3.850e-2260.56Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8J2X0D0_9STRA5.360e-2257.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0P1A8Y1_PLAHL7.300e-2264.71-trehalose-phosphate synthase n=1 Tax=Plasmopara h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11009contigEcto-sp8_S_contig11009:253..1202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop0
Start0
Seed ortholog score100.9
Seed ortholog evalue2.5e-19
Seed eggNOG ortholog27288.XP_003678106.1
Preferred nameTPS1
Model size213
KEGG rclassRC00005,RC00049,RC02748
KEGG koko:K00697
KEGG ReactionR02737
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000302,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0003825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005946,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0006974,GO:0006979,GO:0007049,GO:0007154,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009266,GO:0009269,GO:0009311,GO:0009312,GO:0009405,GO:0009408,GO:0009409,GO:0009414,GO:0009415,GO:0009605,GO:0009607,GO:0009628,GO:0009636,GO:0009653,GO:0009987,GO:0009991,GO:0010035,GO:0016051,GO:0016311,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0016788,GO:0016791,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030435,GO:0030437,GO:0030447,GO:0031668,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0034293,GO:0034599,GO:0034605,GO:0034614,GO:0034637,GO:0035251,GO:0035690,GO:0036168,GO:0036180,GO:0040007,GO:0042221,GO:0042493,GO:0042542,GO:0042578,GO:0042631,GO:0043934,GO:0043935,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046351,GO:0046527,GO:0046677,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0050896,GO:0051321,GO:0051704,GO:0051716,GO:0070301,GO:0070413,GO:0070414,GO:0070415,GO:0070417,GO:0070887,GO:0071214,GO:0071229,GO:0071236,GO:0071462,GO:0071465,GO:0071496,GO:0071704,GO:0090441,GO:0097237,GO:0104004,GO:1901576,GO:1901700,GO:1901701,GO:1902494,GO:1903046,GO:1990234
Exons2
EggNOG free text desc.UDP-glucose-glucosephosphate glucosyltransferase
EggNOG OGs38EGS@33154,3NUM3@4751,3QP00@4890,3RRQJ@4891,3RXWA@4893,COG1877@1,KOG1050@2759
EC2.4.1.15,2.4.1.347
Cds size213
COG Functional cat.H
CAZyGT20
Best tax levelSaccharomycetaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143187.3701472-CDS-Ecto-sp8_S_contig11009:252..3931681143187.3701472-CDS-Ecto-sp8_S_contig11009:252..393Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11009 253..393 +
1681143187.3802028-CDS-Ecto-sp8_S_contig11009:1130..12021681143187.3802028-CDS-Ecto-sp8_S_contig11009:1130..1202Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11009 1131..1202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11009.1380.1prot_Ecto-sp8_S_contig11009.1380.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11009 253..1202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11009.1380.1

>prot_Ecto-sp8_S_contig11009.1380.1 ID=prot_Ecto-sp8_S_contig11009.1380.1|Name=mRNA_Ecto-sp8_S_contig11009.1380.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=71bp
IYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVE
HNGHFANVTICPVGIDPDAVT
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mRNA from alignment at Ecto-sp8_S_contig11009:253..1202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11009.1380.1 ID=mRNA_Ecto-sp8_S_contig11009.1380.1|Name=mRNA_Ecto-sp8_S_contig11009.1380.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=950bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11009:253..1202+ (Ectocarpus species8 EcLAC_412)
ATCTACCGCATTTTGCCGTACCGCGAACAAATCCTGGAGGGGATCCTCAG
CTCCGACATTGTCGGGTTCCAGACGTACGACTACGCGAGGCACTTCCTGT
CGACGGTGGAAAGCCTGCTCGACGCCAACTGCTCCCCTCAGGTGGGGGTG
CCGCCGTCAGTCAGTGGACGTTGGTTGTGTACATGTATGGTGTGTGTTTT
TTTTTTCGTGTATGCTGCTGTACTGCCGGCTGTGCGCGGCCGCTGTACCG
ATGCGACGCAAGATAACACCCCCCCATTTTCAAAGGTCGATTTGTCGACA
GCAGCAAGAGTCGCAGCGCCGAAAGCGACGGCGTTGAAACCGTCCGGTCG
AGAGCCCTCCGAAAACGTATCGTTTCGTTTATGCATCCTCTTGGTCGTGG
GGTAATCCAGCTTTGAAAATCGGTCCAAGGGCGTGTGTTATCTTGTGTCG
TATACGGTATCCATTCGCTCGATGTTGTGTTTGGTGTGTGTTTTTCGTGT
ACTATGTGTTCTGGCTTACGCAGCCTTGTATCTACCTACTTGATATTGTA
AGGTTTGTTTTTCGTGTACTGATGTGTGTTGTGTATGGCGATTTTTTGTT
TTGGTGTAATGCTAGCTGTACGCAGCGCAGTTGCATGTATTTTCTCGAAA
CGAGGCTGGTTGGAGCGGTCGGCTCTGTTCGTTTGTGTTTTTTTTCTTCT
CGCTTCGTCTTGTTGCTGCTGCCGCCGCTGCCGCTGCTTGTTGTGATGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGTTGTGATGTTGCTAC
TGCTTCTGCTGCTGCTGTTGCTGCTGTTGTTGTTGTTGCTGCTGCTGCTG
CTGCTGTTGCTGCTGCTGCTGGTACAAGGGGGTGGAGCACAACGGGCACT
TCGCGAACGTGACGATCTGTCCGGTTGGCATCGACCCGGATGCGGTGACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11009:253..1202+

>mRNA_Ecto-sp8_S_contig11009.1380.1 ID=mRNA_Ecto-sp8_S_contig11009.1380.1|Name=mRNA_Ecto-sp8_S_contig11009.1380.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11009:253..1202+ (Ectocarpus species8 EcLAC_412)
ATCTACCGCATTTTGCCGTACCGCGAACAAATCCTGGAGGGGATCCTCAG
CTCCGACATTGTCGGGTTCCAGACGTACGACTACGCGAGGCACTTCCTGT
CGACGGTGGAAAGCCTGCTCGACGCCAACTGCTCCCCTCAGGGGGTGGAG
CACAACGGGCACTTCGCGAACGTGACGATCTGTCCGGTTGGCATCGACCC
GGATGCGGTGACG
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