mRNA_Ecto-sp8_S_contig11008.1379.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11008.1379.1
Unique NamemRNA_Ecto-sp8_S_contig11008.1379.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11008.1379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11008contigEcto-sp8_S_contig11008:5662..5823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size162
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-25_000190.1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143187.3377745-CDS-Ecto-sp8_S_contig11008:5661..58231681143187.3377745-CDS-Ecto-sp8_S_contig11008:5661..5823Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11008 5662..5823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11008.1379.1prot_Ecto-sp8_S_contig11008.1379.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11008 5662..5823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11008.1379.1

>prot_Ecto-sp8_S_contig11008.1379.1 ID=prot_Ecto-sp8_S_contig11008.1379.1|Name=mRNA_Ecto-sp8_S_contig11008.1379.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
LRTSPSLLLLLCHSCATTAAALGARHGVPHLACLGLSLRERRALDGLVAV
RLF*
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mRNA from alignment at Ecto-sp8_S_contig11008:5662..5823-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11008.1379.1 ID=mRNA_Ecto-sp8_S_contig11008.1379.1|Name=mRNA_Ecto-sp8_S_contig11008.1379.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11008:5662..5823- (Ectocarpus species8 EcLAC_412)
CTGCGAACATCCCCCTCACTGCTACTGCTGCTGTGTCACTCATGCGCCAC
AACCGCGGCCGCTCTGGGCGCGAGACACGGCGTGCCGCACCTTGCGTGCC
TCGGTCTCTCTCTGCGCGAAAGGAGAGCGCTGGATGGATTGGTAGCCGTG
AGGTTGTTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11008:5662..5823-

>mRNA_Ecto-sp8_S_contig11008.1379.1 ID=mRNA_Ecto-sp8_S_contig11008.1379.1|Name=mRNA_Ecto-sp8_S_contig11008.1379.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11008:5662..5823- (Ectocarpus species8 EcLAC_412)
CTGCGAACATCCCCCTCACTGCTACTGCTGCTGTGTCACTCATGCGCCAC
AACCGCGGCCGCTCTGGGCGCGAGACACGGCGTGCCGCACCTTGCGTGCC
TCGGTCTCTCTCTGCGCGAAAGGAGAGCGCTGGATGGATTGGTAGCCGTG
AGGTTGTTCTAA
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