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Homology
BLAST of mRNA_Ecto-sp8_S_contig11007.1378.1 vs. uniprot
Match: A0A6H5L5Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y8_9PHAE) HSP 1 Score: 451 bits (1161), Expect = 7.300e-150 Identity = 256/297 (86.20%), Postives = 263/297 (88.55%), Query Frame = 1
Query: 1 VRLVLPEGLELSSLFYFWLSSTLARYLGAEVTMEEREIFRDNVFGLSLSATGLSEVSGKPSSWEAYEATDKKRPVFHTLPGARGTAFFGWKWGDFSAFMDARARVLESDSWEGGEALVHVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFARQLPPXXXXXXXXXXXXXXXXXXXXXXXXXXLSQTAHTPTPTLRGTADDGGGGREPEGLVLTYRDANNLVVKYPSVSSVPAYDLLSRRHRDLTHLRLQAYRFFQRLRASVERNKDLEDLWKRPGVPKPNYALAKFLV 891
VRLVLPEGLELS+LFYFWL+STLARYLGA VTMEEREIFR+NVFGLSLSATGLSEVSG PSSW AYEA DKKRPVFHTLPGARGTAFFGWK GEALVHVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFARQLPPXXXXXXXXXXXXXXXXXXXX LSQTAHTPTPTLRGT DDGGGGREPEGLVLTYRDANNL+VKYPSVSSVPAYDLLSRRHRD+THLRLQAYRFFQRLR SVERNKDLEDLWKRPG+PKPNYALAKFL+
Sbjct: 199 VRLVLPEGLELSNLFYFWLASTLARYLGAGVTMEEREIFRENVFGLSLSATGLSEVSGVPSSWGAYEAADKKRPVFHTLPGARGTAFFGWK---------------------EGEALVHVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFARQLPPXXXXXXXXXXXXXXXXXXXXEALP--LSQTAHTPTPTLRGT-DDGGGGREPEGLVLTYRDANNLIVKYPSVSSVPAYDLLSRRHRDVTHLRLQAYRFFQRLRTSVERNKDLEDLWKRPGMPKPNYALAKFLI 471
BLAST of mRNA_Ecto-sp8_S_contig11007.1378.1 vs. uniprot
Match: D8LE24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE24_ECTSI) HSP 1 Score: 383 bits (983), Expect = 2.060e-123 Identity = 225/281 (80.07%), Postives = 227/281 (80.78%), Query Frame = 1
Query: 1 VRLVLPEGLELSSLFYFWLSSTLARYLGAEVTMEEREIFRDNVFGLSLSATGLSEVSGKPSSWEAYEATDKKRPVFHTLPGARGTAFFGWK------------------------------------WGDFSAFMDARARVLESDSWEGGEALVHVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFARQLPPXXXXXXXXXXXXXXXXXXXXXXXXXXLSQTAHTPTPTLRGTADDGGGGREPEGLVLTYRDANNLVVKYPSVSSVPAYDLL 735
VRLVLPEGLELSSLFYFWLSSTLARYLGAEVTMEEREIFRDNVFGLSLSATGLSEVSGKPSSW AYEA DKKRPVFHTLPGARGTAFFGWK WGDFSAFMDARARVLESDSWEGGEAL HVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFARQLPPXXXXXXXXXXXXXXXXXXXXXX LSQTAHTPTPTLRGTADDGGGGREPEGLVLTYRDANNLV + P +L
Sbjct: 151 VRLVLPEGLELSSLFYFWLSSTLARYLGAEVTMEEREIFRDNVFGLSLSATGLSEVSGKPSSWGAYEAADKKRPVFHTLPGARGTAFFGWKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGDFSAFMDARARVLESDSWEGGEALAHVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFARQLPPXXXXXXXXXXXXXXXXXXXXXXTPL-LSQTAHTPTPTLRGTADDGGGGREPEGLVLTYRDANNLVTSGLDAPAAPGVPIL 430
BLAST of mRNA_Ecto-sp8_S_contig11007.1378.1 vs. uniprot
Match: A0A2H9TQV8_9FUNG (Uncharacterized protein n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TQV8_9FUNG) HSP 1 Score: 55.8 bits (133), Expect = 4.890e-5 Identity = 38/155 (24.52%), Postives = 68/155 (43.87%), Query Frame = 1
Query: 19 EGLELSSLFYFWLSSTLARYLGAEVTMEEREIFRDNVFGLSLSATGLSEVSGKPSSW-EAYEATDKKRPVFHTLPGARGTAFFGWKWGDFSAFMDARARVLESDSWEGGEALVHVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFA 480
+ +E++ F+ + L +Y+ + + + + FG+SL +E++ KP W + E ++ LP + G W W F F R +G + +P V W S ++FL EF + RGL +L+P L +SF+
Sbjct: 139 DDIEVAPRFFEYSVIALEKYILPGGQLANQTVLTERFFGISLVTPRYNEIAMKPVDWIPSQEIGMEESQFLFQLPSSWGALLIPWFWRQFLQFYRWRRDK------DGSDLKQSIPDSAVRY-WRRSWKKFLIEFMYMRGLYMLYPALERQISFS 286
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 0 |
| Model size | 893 |
| Hectar predicted targeting category | signal peptide |
| Exons | 5 |
| Cds size | 891 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143187.2744012-CDS-Ecto-sp8_S_contig11007:887..1052 | 1681143187.2744012-CDS-Ecto-sp8_S_contig11007:887..1052 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11007 888..1052 + |
| 1681143187.2855403-CDS-Ecto-sp8_S_contig11007:2198..2306 | 1681143187.2855403-CDS-Ecto-sp8_S_contig11007:2198..2306 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11007 2199..2306 + |
| 1681143187.2947204-CDS-Ecto-sp8_S_contig11007:3322..3385 | 1681143187.2947204-CDS-Ecto-sp8_S_contig11007:3322..3385 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11007 3323..3385 + |
| 1681143187.3021653-CDS-Ecto-sp8_S_contig11007:4490..4844 | 1681143187.3021653-CDS-Ecto-sp8_S_contig11007:4490..4844 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11007 4491..4844 + |
| 1681143187.310299-CDS-Ecto-sp8_S_contig11007:5781..5982 | 1681143187.310299-CDS-Ecto-sp8_S_contig11007:5781..5982 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11007 5782..5982 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig11007.1378.1 >prot_Ecto-sp8_S_contig11007.1378.1 ID=prot_Ecto-sp8_S_contig11007.1378.1|Name=mRNA_Ecto-sp8_S_contig11007.1378.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=297bp
VRLVLPEGLELSSLFYFWLSSTLARYLGAEVTMEEREIFRDNVFGLSLSA TGLSEVSGKPSSWEAYEATDKKRPVFHTLPGARGTAFFGWKWGDFSAFMD ARARVLESDSWEGGEALVHVPGGEVALSWAGSLERFLAEFCHGRGLGILH PNLNGDVSFARQLPPSSSSSSASSGGSGGGGWLEEEEETLLLSQTAHTPT PTLRGTADDGGGGREPEGLVLTYRDANNLVVKYPSVSSVPAYDLLSRRHR DLTHLRLQAYRFFQRLRASVERNKDLEDLWKRPGVPKPNYALAKFLV back to topmRNA from alignment at Ecto-sp8_S_contig11007:888..5982+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig11007.1378.1 ID=mRNA_Ecto-sp8_S_contig11007.1378.1|Name=mRNA_Ecto-sp8_S_contig11007.1378.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5095bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11007:888..5982+ (Ectocarpus species8 EcLAC_412) GTTCGGTTGGTGCTGCCGGAGGGGCTGGAGCTGTCGAGCCTGTTCTACTT
TTGGCTGTCGAGCACGCTGGCGAGGTACCTGGGCGCAGAGGTGACGATGG
AGGAGCGCGAGATCTTCCGAGATAACGTGTTCGGGTTGTCCCTTTCGGCG
ACCGGTCTGTCGGAGGTGAGACAGGGAGACAGAGAGAAAGGGAGACAGAC
AGACAGAGAGGGAGAGAGAGACACAGAGACAGAGACAGAGATCGAGACAG
AGAGAGAGAGGGAGAGAGGGGGGTAGACAACCTCACTCGACTGTTGGATC
AGATCAGAATATTTGTTGCTGGAGAGAAATCTAAATTTGCTGATATTTTT
TTGTTATTATTGTGAGACAGAGACAGAGATAGAGAGGGAGAGAGGGAGGT
AGACAACCTCACTCGACTGTTCGATCAGATCAGAATATTTGTTGCTGGAG
AGAAATCTAAATTTGCTGATATTTTTTTGTTATTATTGTGCGCAACTTTA
GGTCCCCGACATGATGTGTCCATATTAAACCGTTGGTGGGGACGGTGTGT
GTGTGTGCTGACCGCTGCTGTTGTTGCTGCTGTTGTGTGGTGCTTTTGGT
GTTGTTGGGGTGTTTTTTTTGCTGTCAGGACGATTGCATGCAAAGCACCG
CAGTAGGTGATGGCGGAAAGCCCTCTCGTTGTCATTTAATTACCCCGCAG
AAAGACCAGGGATGTACAGGGCTGTGTGTGTGTGTGGGGGGGTCCTTGAA
TCGGCACGGCGAGAGCGCGGATCAGTAAGTAGGCGAGAAGGAGGTAGTGC
TTGTCCCCGTCGCCTCAGGCAAAAGCCTTCCCCACTCAAAAGAAGAAAAC
AGAAGCAGTGGTGCCATGGTGCAATCCGTGCGTTCGTTCGCGCCGCTGCT
GCTGCTGCTGCTGCAGTTGTTGCGGCTTCGGCTGCCTGCACCACCTGCCG
CCGGTTTGCCCGATGTTTTTGTCCGATGTTTGGTGGTGGTCGTGGTGGTG
GCACACACACAGTTCATGGCCTTTAGAAGTGTTTCGTGTAGTCAACCGCA
CTGAGACTGTCGTCTCATCATCGGTCAGCTGGTTAGCGCGGTCGATGCTA
ATAATAAAGACACACACACGCACACACGTAATACAAACACACGTTTCATT
GGTCAGCCGATTAGCGCGGTCGATGCTAATAATAAAAGCCACACACACAC
ACACAAATTCTTTTTTTTCAACTGCTCTAGGATTGACGTATTTTCACTGG
TCAGCCGGTCAGCGCGGTATGCTAACAACAATAAAACACCCGCCAAAAAA
CGCCCACACAGGTTTCCGGCAAGCCCTCGTCGTGGGAAGCGTACGAGGCC
ACTGACAAGAAACGGCCTGTGTTCCACACCCTCCCCGGGGCCAGAGGGAC
CGCCTTCTTTGGCTGGAAGGTAAGGGGGGTTGGGGGGGTGGGGGGCGAGT
TGAGGCTGAGGTCGAAGGGGGGGCGTCGAGTGCTGGTGTTAAGGTGCTGA
GCGGAGGTCTTATTGGCGGAGGTCTTATTAGCGGGTTTTAAATGCGAAGA
AGACGACGATGACGACGACAGCGACGAAAACGAAAGAGAAGGGGCGGCTG
GTGTTTGTAACCCCCAGCGGGAACCTGATGCCACCGCTTCTTTTCTTGGG
GCCGGTTGCGGCCGTCTTTTCCGCCGCCGCCGGATGGAGTTGTGGTGGAG
TGTGCGAGGCTTGTCTTGTTAGCCGCAGCTTGTGTACCTACACATATCCC
GCTACAGACTGCGTGTTTTCATTGGTTGATGTTAGTTAGCGCGGTCGATG
TTAGTTAAGAAAACACACAGAGAGCGGGGGGGGGGGGGGGGGGGGGAGGG
ACCAGGGCGGGGGGTGGGGTTTGTTTGTTTTGTGTTCTGGGGTGTCGTCC
CCNNNNNNNNNNGGTGGTCTTGGATTTGTTTGTGGTGGCGGGGGGGGGGT
GGCAGACAGCAAAGCGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGAGAGTACACGCGTGGAGGTGTGAATTTGTTTTTGGCTTGGCTTGGAG
TGTGCCTCCCATGCCATGGCATCGATTTGTGTTTGAGTTCTATCTTTAGC
CGGGAGAGGAAGGGAGGAAGAGGAAGAGAGGAGGAGGTCCGGAAAAGAAG
CGGGAGAGATTTCGTAGTGCACACTAGACAACAAGGGCCGTAACGACGAC
TTCAAAGAAGGCGACTTAATGATGGGACATTCCACGGCCCTGCAAAGCAC
CATCGTTGTACCAGCAAATTTAGCCCGCGAAACGTCATCAGTCCATCATG
AACTCTCCCACCTCTCCGCGCGCTTGTTCATGAACATGACGTCGTCGCTT
GTTTCCCTCGGTGCTGTTCGCGGTAAAAAACTCTGGGATCGCGATGGTGG
TGCTGGACGGTGTTGCTTTTTTTTTCGTGTGCAAGTGGGGGGACTTCTCC
GCATTCATGGACGCCCGAGCCAGAGTGCTGGAGTCTGATTCGTGGGAGGT
GAGGCAAAACACTGGGGCCACGTGTGTCCGTGTCCATGATCGTCGCCGCA
GCAGTGTGTTCGCAAGAGAAGCGAAAGCTATGCACGCACGCATAGATGCA
CGAGGCAGGCAAGGAGAAGGCTTGCTCCTCGGAGGTTGTCAGGGATCAGA
GCCCGACCTCTGCTGGCCAGCCACGATTATGGTGCTGTCTGTTCCTCTGG
GTATGTGTTTCGTATTCTTTCCCGCGATAAATTGCTATCGCAAACAGACG
TGCCAAGCAAACAAACCGCGGCCAAGTTACGGCGATTAAACTCACACGCG
TTGTTGTTTGTCCTCCCTTTTCCCTCTTTGCGGTTGCCGAGCGAAGTACA
TGGTTTCTGTACATACACATGAACGAGAACGAAATGTTGCCATCGTATGT
AAGCCGTAGATACGAAGTTTGCCTGCGCGGAAGTCGAGGCTGCTGCAAGG
GAGAAATGTCTCTCTCCAGGGGGTTGTAATTTACAACACCGATAATCCGC
CAATTTGGTTATCCGCATGTAGGTATGAAATACCCCGTCAGAGCTGAAAA
TCCTCCTGGGGGAGGGTGGGGGGATCAAGGTGTCGGCTTCGGCGTTTCGG
CCTTGTCCTAGCCGTCAGACTAGCCCGGGTTTTTATCCCGCCAAACCTAA
CCCTACGTCTGTTCGGCGTATGACTGAACCCCGTGATCGTAGAATCGCGC
ATTCCGGCGCTCACCACCCAATTCCCAGTGTCAAAAAATGGCGGTGAAGG
AGTCTTCCTTGTTTTTGCTCGACCCATGGCTTTCCATCTGAAAAGCGCAT
GCATGCTTGGCTTCACCCACACCCCCCACCCAAACGACTAATAAGGCAAG
CCATATATTGTGAGCGCGCCCGCCCCCCAAACCACCCACACCCGATTACC
CTCACACTTGGCCTTTCACTGCTGCCGCCATCGCCGCCGCTTCTGCTGCC
GCTGCTGCCGCCGCTACTGCTGCTGCTTCTATTGCTGCTGCTGCTGCTGC
TGCTGCTGCTACTACTGCTGCTGCTGCGTCGATGCTGCTGCTACTACTGC
TGCTGCTGCGTCGCTGCTGCTGCTGCCGCTGCCGCTGCCTCTGCTAACGA
CAGGGGGGCGAGGCGCTGGTACACGTCCCGGGGGGCGAGGTGGCGCTCTC
TTGGGCCGGGTCCCTCGAGCGGTTCCTGGCAGAGTTTTGCCACGGCAGGG
GCCTCGGCATCCTTCACCCGAACCTCAACGGGGACGTGAGCTTCGCCCGA
CAGTTGCCGCCATCCTCGTCCTCCTCCTCCGCTTCCTCGGGTGGCAGCGG
GGGTGGAGGGTGGCTGGAGGAGGAGGAGGAAACGCTGCTGCTGTCGCAGA
CGGCCCACACGCCGACGCCGACGCTCAGGGGGACCGCGGATGACGGGGGG
GGGGGGCGCGAGCCGGAGGGCCTCGTGTTGACGTACAGGGACGCCAACAA
CTTAGTTGTGAGTCGGTCGCGTCTTGAGGTGTTCTTTTTCGGTCGGATAG
TATCGAAAGCGTCGCGCGTGCGCTGTCGGAGCGAGCGTTTGCGCGCGCGG
CTCGCCGCTGTAGCGTACGTTATCATCCTGTGCAAAGGGGTTACCCGTAA
GAGGCGGAGGGAGAGATGGCACCCCCCCCTAGAGCGACTTTCAAAGCTCC
ATTGCTCCACAACCAAGATTGTCTGTACCGTACCGTATTCCGTACCGTGG
TATTCCGTAAGAGTCGGAGAGATGGCACCCCCCCTAGAGCGATTTCAAAG
CTCGACAACCAATGGGGAGCGGAAAGAGCCCGATACGTCTAACGGAAAGA
CCTCGACGAGATGTTTCCGAAACGAACATTCTTGACGTTGGCGCAAGCTT
GGTTGTGGAGCAATGGAGCTTGGAAAGTCGCTCTAGAGGGGGGTGCCATC
TCTCCGCCTCTTACGGAATACCACGGTGCGGAATACGGTACGGTACAGAC
AATCTTGGTTGTGGAGCAATGGAGCTTTGAAAGTCGCTCTAGGGGGGGGT
GCCATCTCTCCGCCTCTGAACGGTGAATGCTTGTTGGTAGCGCTCGGCAC
GGGCACACGTCACATAGGGTAGTGAAGGGCTTGGCTTCTTCAGACCGTCG
TGGCCCCGGCACCCGTAGCCGGCGGAGGTTCGCAGCACGCCAATCAAAGT
CTCGCCTGCAAGTGCTTGGTGTATAGTAGTAGACGCCGGTATTTGAAGTG
CGTTTCGGTGTCGTCCTGTGGATAAATGCTCTCTCCGGTTTAACGTGAGA
CTTCTTCCCTTATCCTTCAACGGCCTCTCAATCCCTCTCTTGGCCTTCAC
CAACCTCTCAACTGCTTTGTGTTCCTTCAATCTAAGGCCGATTTCGTTTT
GTCTACATAGTCGACCCTCATTTATTGTTTGTTTGTTTTTTCAGGTAAAA
TACCCATCGGTGTCCTCCGTGCCTGCGTACGACCTCCTGTCCCGGAGACA
TCGGGACTTGACGCACCTGCGGCTCCAGGCGTACCGGTTCTTCCAACGCT
TGCGAGCGTCGGTCGAGAGGAACAAGGACCTAGAGGACTTGTGGAAAAGG
CCCGGGGTGCCGAAGCCGAACTACGCGCTCGCCAAATTCCTGGTG back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig11007:888..5982+ >mRNA_Ecto-sp8_S_contig11007.1378.1 ID=mRNA_Ecto-sp8_S_contig11007.1378.1|Name=mRNA_Ecto-sp8_S_contig11007.1378.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11007:888..5982+ (Ectocarpus species8 EcLAC_412) GTTCGGTTGGTGCTGCCGGAGGGGCTGGAGCTGTCGAGCCTGTTCTACTT TTGGCTGTCGAGCACGCTGGCGAGGTACCTGGGCGCAGAGGTGACGATGG AGGAGCGCGAGATCTTCCGAGATAACGTGTTCGGGTTGTCCCTTTCGGCG ACCGGTCTGTCGGAGGTTTCCGGCAAGCCCTCGTCGTGGGAAGCGTACGA GGCCACTGACAAGAAACGGCCTGTGTTCCACACCCTCCCCGGGGCCAGAG GGACCGCCTTCTTTGGCTGGAAGTGGGGGGACTTCTCCGCATTCATGGAC GCCCGAGCCAGAGTGCTGGAGTCTGATTCGTGGGAGGGGGGCGAGGCGCT GGTACACGTCCCGGGGGGCGAGGTGGCGCTCTCTTGGGCCGGGTCCCTCG AGCGGTTCCTGGCAGAGTTTTGCCACGGCAGGGGCCTCGGCATCCTTCAC CCGAACCTCAACGGGGACGTGAGCTTCGCCCGACAGTTGCCGCCATCCTC GTCCTCCTCCTCCGCTTCCTCGGGTGGCAGCGGGGGTGGAGGGTGGCTGG AGGAGGAGGAGGAAACGCTGCTGCTGTCGCAGACGGCCCACACGCCGACG CCGACGCTCAGGGGGACCGCGGATGACGGGGGGGGGGGGCGCGAGCCGGA GGGCCTCGTGTTGACGTACAGGGACGCCAACAACTTAGTTGTAAAATACC CATCGGTGTCCTCCGTGCCTGCGTACGACCTCCTGTCCCGGAGACATCGG GACTTGACGCACCTGCGGCTCCAGGCGTACCGGTTCTTCCAACGCTTGCG AGCGTCGGTCGAGAGGAACAAGGACCTAGAGGACTTGTGGAAAAGGCCCG GGGTGCCGAAGCCGAACTACGCGCTCGCCAAATTCCTGGTG back to top
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