mRNA_Ecto-sp8_S_contig1100.1371.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1100.1371.1
Unique NamemRNA_Ecto-sp8_S_contig1100.1371.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Match: D8LL30_ECTSI (VPS9 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL30_ECTSI)

HSP 1 Score: 737 bits (1902), Expect = 5.980e-262
Identity = 462/487 (94.87%), Postives = 463/487 (95.07%), Query Frame = 1 
Query:    1 RGATAGSSNAFVGVPVSAVRNGREADTSPNGSAGATANXXXXXXXXXSGVTAATMSGMMHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYGLAADPARDSSISTRLRSLGFLTEEHLGVPPLVDAQEDGAPTWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDFERGLIQGFQESARVGLQAHQQEVKKEEEHARLLHSNSQGRANGPIPGSATTSASLSPPPSGDHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRIIGTAEVRARRXXXXXXXXXXXXXSLPFSSTAVXXXXXXXXXXXXXXXXXPSPRERRPSGRSRQRQQRNGGSKQQPAVLQQLRFVGCTAAELRMSEVPALLAEHNQLARLCERLLAEREEMTTPHRRR 1461
            RGATAGSSNAFVGVPV AVRNGREADTSPNGSAGATANXXXXXXXXXSGVTA TMSGMMHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYGLAADP RDSSISTRLRSLGFLTEEHLGVPPLVDAQEDGA TWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDFERGLIQGFQESARVGLQAHQQEVKKEEEHARLLHSNSQGRANGPIPGSATTSASLSPPPSGDHASXXXXXXXXXXXXXXXXXX            PR IGTAEVR RRXXXXXXXXXXXXX LPFSSTA XXXXXXXXXXXXXXXXX   RER PSGRSRQRQQRNGGSKQQPAVLQQLRFVGCTAAELRMSEVPALLAEH+QLARLCERLLAEREEMTTPHRRR
Sbjct:  176 RGATAGSSNAFVGVPVPAVRNGREADTSPNGSAGATANXXXXXXXXXSGVTAVTMSGMMHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYGLAADPGRDSSISTRLRSLGFLTEEHLGVPPLVDAQEDGALTWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDFERGLIQGFQESARVGLQAHQQEVKKEEEHARLLHSNSQGRANGPIPGSATTSASLSPPPSGDHASXXXXXXXXXXXXXXXXXXSPGPASLPQPEPPRTIGTAEVRTRRXXXXXXXXXXXXX-LPFSSTAXXXXXXXXXXXXXXXXXXXXTRERHPSGRSRQRQQRNGGSKQQPAVLQQLRFVGCTAAELRMSEVPALLAEHDQLARLCERLLAEREEMTTPHRRR 661
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Match: A0A836C806_9STRA (VPS9 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C806_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.760e-44
Identity = 104/232 (44.83%), Postives = 135/232 (58.19%), Query Frame = 1 
Query:  175 MHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYGLAADPARDSSISTRLRSLGFLTEEHLGVPPLVDAQEDGAP----TWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLT----GDRAAGGAL---------------PGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLS-EAGYVLTQLVSAVCFLEEVDASVLSIAHGDFERGL 798
            +HAFL R    MRE  LWR E+E QW DT ESLER+VM+K++D  + LAAD ARD++ + RL+SL F+  EHL + PLV     GA      W+   A LL++  +R PGD L C++ C   VA +L      D   G +                PGAD+ LPALI LVK  NPP L S LE++Q+F  P +L++  A Y LTQL SA+ FLE  DA  LS+   +FER L
Sbjct:  169 IHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADDARDAATALRLQSLSFVGFEHLDMAPLVSGA--GASHADLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEFERRL 398
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Match: A0A7S2W9D2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9D2_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.440e-39
Identity = 103/235 (43.83%), Postives = 140/235 (59.57%), Query Frame = 1 
Query:  166 SGMMHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIV---MHKVFDQAYGLAADPARDSSISTRLRSLGFLTEEHLGVP------------PLVDAQEDGAPTWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDFERGLIQGFQESAR 825
            S  + AFL R+ AQMRES LW  ET+AQW+ ++ S+E  +   +H VF  +   A +  RD  +  RLRSL F+   HL +             P  +A+ED    W ++   L KMS    P   +  +V+C++ +A +LT   A  G LPGADDFLPA+IL+VK+ANP  LHS L F+Q+F    +LLSEAGY+ T L SAV FL++VDA+ L+I   +FE G IQ  QE AR
Sbjct:  194 STTISAFLERLHAQMRESPLWLSETDAQWDSSKVSVESFLFRKLHHVFFPSSPEAVEQDRD--LERRLRSLAFIDAAHLDIKSLQQEYQSSMGQPSNEAREDEM--WQESITCLRKMSAEYGPTAKIDQVVRCSKSIASVLT--TAMRGKLPGADDFLPAMILVVKKANPSRLHSNLTFIQTFAPQHRLLSEAGYIFTHLSSAVAFLQDVDANALTITSEEFEAG-IQRSQEQAR 421
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Match: A0A7S2G2K9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G2K9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.300e-37
Identity = 91/223 (40.81%), Postives = 132/223 (59.19%), Query Frame = 1 
Query:  172 MMHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYGLAADPARDSSISTRLRSLGFLTEEHLGVPPLVDAQEDGAPTWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGG--ALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDFERGLIQGFQESARVGL 834
            ++ AFL RV  QMRESA+W  E   +WE T  + E  +  K+         +  +++ +  R++SL F++ EHL +     ++E+    WA AE  +  +SR   P   ++ IV+ +R +  +LT      G  ALPGADDFLPA+IL+VKRANPP LHS L+ +  +  P +L+SEAGYV T L SAV FL  +DA+ LSI   DF+RG+ +  QE AR  +
Sbjct:   76 VIQAFLERVTGQMRESAVWSGEEPKEWEATLIATESFIFRKI-GHKIDSEEELQQNTELFGRIKSLAFISVEHLEMTARPKSEEE----WATAEGMIRSLSREAGPTAKIQIIVELSREIMRVLTEACQQNGSHALPGADDFLPAMILVVKRANPPTLHSDLKLIYQYSAPVRLMSEAGYVFTHLQSAVAFLRTLDATALSITPSDFDRGM-RRCQEQARQDM 292
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Match: A0A1Y1IEC5_KLENI (Vacuolar sorting protein 9, (VPS9) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEC5_KLENI)

HSP 1 Score: 147 bits (372), Expect = 1.270e-34
Identity = 88/218 (40.37%), Postives = 124/218 (56.88%), Query Frame = 1 
Query:  166 SGMMHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYG-LAADPARDSSISTRLRSLG-FLTEEHLGVPPLVDAQEDGAPTWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTG-DRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDFERGLIQGF 810
            S  +  FL + EA  R   LW   TE + E   E LE+ ++ KVF +A+G + AD A D  ++ R+ +L  FL  EHL +P    A     P+W  A+ +L K+   + P D L CI+ C R++  LL     AA G  PGADDFLP LI +V +ANPP LHS L+F+Q +R  S+L++E+ Y  T  VSA  F+E ++ S LSI   +FE  + Q  
Sbjct:   56 SAAVQQFLAQTEATFRAHPLWAGATEEELESAGEGLEKYLLTKVFARAFGPIPADAATDRLLAERMAALQQFLRPEHLDIP----ASFGNEPSWLLAQKELGKLGAYKAPRDKLVCILNCCRVINNLLLNMAMAAQGDPPGADDFLPVLIYVVIKANPPALHSNLQFIQRYRAASRLVAESAYFFTNAVSAAAFIEHLNPSSLSIDPAEFESKMQQAL 269
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Match: G4U2U5_SERID (Related to VPS9 (Involved in vacuole trafficking) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4U2U5_SERID)

HSP 1 Score: 144 bits (364), Expect = 1.630e-33
Identity = 85/225 (37.78%), Postives = 136/225 (60.44%), Query Frame = 1 
Query:  172 MMHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYG----------LAADPARDSSISTRLRSLGFLTEEHLGVPPLVDAQEDGAPTWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLS-IAHGDFERGLIQGFQ 813
            ++  FL  +E +MRE ++WRRETE ++E++ E++E++VM++V+D  +              D  +D  +S R+R  G++TE+HL +P  V     G   +A+ E  LLK++  + P D + CI+ C +++ GLL   +       GAD F+P LIL+V +ANP  L S +E++Q FR PSKL SE+GY L+ L+ AV F+E +D + LS I   +FER + +  Q
Sbjct:  232 LVQQFLAFIEPKMRECSVWRRETEEEFENSMEAMEKLVMNRVYDYTFTPQVHASGRQITTDDLEKDHVLSQRIRLFGWVTEKHLDIP--VGENNQGFLNFAEQE--LLKINHYKAPRDKMICILNCCKVIFGLLRQLKNE----QGADAFVPVLILVVLQANPEHLLSNVEYIQRFRSPSKLQSESGYYLSSLMGAVSFIETMDHTSLSNITQEEFERNVEEAIQ 448
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Match: D8R0M8_SELML (VPS9 domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R0M8_SELML)

HSP 1 Score: 141 bits (355), Expect = 3.220e-33
Identity = 81/204 (39.71%), Postives = 118/204 (57.84%), Query Frame = 1 
Query:  184 FLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYG-LAADPARDSSISTRLRSLG-FLTEEHLGVPPLVDAQEDGAPTWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDFE 789
            FL   E   R   LW   TE + E+  E LE+ VM K+F +AY  L +D  +D  +S ++  L  F+  EHL +P     +     +W  AE +L K++  + P D L CI+ C R++  LL    A  G  PGA++FLPALI +V +ANPP LHS L+F++ +R  S+L++EA Y  T LVS   F+E++DA  LS+   +FE
Sbjct:   59 FLSTTEVAFRAHPLWAGATEEELENAAEGLEKYVMTKIFTRAYSPLPSDSLKDQELSDKISLLQHFIKPEHLDLPQSFQNEA----SWLIAEKELQKINSYKAPRDKLVCILNCCRVINNLLL--MAKSGTPPGAEEFLPALIYVVIKANPPQLHSNLQFIERYRHSSRLVAEASYFYTSLVSVESFIEKLDAKSLSMDEAEFE 256
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Match: A0A5J5BP11_9ASTE (VPS9 domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BP11_9ASTE)

HSP 1 Score: 136 bits (343), Expect = 2.790e-32
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 1 
Query:  175 MHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYGLAADPAR-DSSISTRLRSL-GFLTEEHLGVPPLVDAQEDGAPTWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDF 786
            +  FL  +EA +R+  LW   TE + +   E LE+ VM K+F + +   A+ A+ D  I  ++  L  FL  EHL +P + +       +W  AE +L K++  + P + L CI+ C R++  LL     +   +PGADDFLP LI ++ +ANPP LHS L+F+Q +R  +KL+SEA Y  T LVSA  F+ ++D   LSI   +F
Sbjct:   53 LQEFLLNMEAAIRDHPLWAGATEEEVDCAMEGLEKYVMTKLFSRTFASFAEDAKIDQEILEKISLLQNFLRPEHLDIPAVFNNNA----SWLLAEKELQKINAFKAPREKLLCILNCCRVINNLLLNSSMSENRVPGADDFLPVLIYVMIKANPPQLHSNLKFIQLYRRQAKLVSEAAYYFTNLVSAKSFIVDLDGKSLSIDETEF 254
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Match: A0A4P9XSS2_9FUNG (VPS9 domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XSS2_9FUNG)

HSP 1 Score: 133 bits (334), Expect = 4.870e-32
Identity = 78/222 (35.14%), Postives = 125/222 (56.31%), Query Frame = 1 
Query:  172 MMHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAY--GLAADPARDSSISTRLRSLGFLTEEHLGVPPLVDAQEDGAPTWADAEA-----QLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDFERGLIQGFQE 816
            ++H FL  +E +M E   WR  +EA++++ RE +E++VM+++F + +      D  RD     +++   ++ EEHL +P    A  +    +A         +LLKM+  R P D L CI+ C  ++  +  G  A  G   GAD FLP LI +V +ANP  L S ++++  FR PS+L SEAGY LT L+  + FLE +DAS LSI+  +F+  + +  +E
Sbjct:   45 IIHDFLEFIEGKMHECDQWRGVSEAEFDNAREGMEKLVMNRLFGETFCSSTTDDAERDEITHQKIQIFRWIKEEHLDIP--TTANNESYFEFAQKACWCLLLELLKMNNYRAPRDKLICILNCCIVIFSMFRG--AVLGEAAGADKFLPILIYVVIKANPEQLVSNVQYISRFRHPSRLESEAGYYLTNLMGVISFLERMDASSLSISREEFDASISRTLEE 262
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Match: UPI001FB0693D (vacuolar protein sorting-associated protein 9A-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0693D)

HSP 1 Score: 135 bits (339), Expect = 7.390e-32
Identity = 77/206 (37.38%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:  175 MHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYGLAADPAR-DSSISTRLRSL-GFLTEEHLGVPPLVDAQEDGAPTWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDF 786
            +  FL  +EA +R+  LW   TE + +   E LE+ VM K+F + + ++ + ++ D  IS ++  L  FL  EHL +PP    +     +W  A+ +L K++  + P + L CI+ C RI+  LL     +   + GADDFLP LI +  ++NPP LHS L+F+Q +R  SKL+SEA Y  T LVS   F+  +DA  LSI   +F
Sbjct:   49 LQEFLETMEATIRDHTLWAGATEEEVDSAVEGLEKYVMTKLFSRTFAVSIEDSKADQDISEKICLLRSFLKPEHLDIPPNFHNES----SWLLAQKELQKINAFKSPREKLLCIMSCCRIINNLLLNGSMSDNHVSGADDFLPILIYITIKSNPPQLHSNLKFIQLYRRESKLVSEAAYYFTNLVSVNSFIVNLDAKSLSIDENEF 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1100.1371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL30_ECTSI5.980e-26294.87VPS9 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836C806_9STRA6.760e-4444.83VPS9 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2W9D2_9STRA2.440e-3943.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G2K9_9STRA1.300e-3740.81Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1Y1IEC5_KLENI1.270e-3440.37Vacuolar sorting protein 9, (VPS9) n=1 Tax=Klebsor... [more]
G4U2U5_SERID1.630e-3337.78Related to VPS9 (Involved in vacuole trafficking) ... [more]
D8R0M8_SELML3.220e-3339.71VPS9 domain-containing protein n=4 Tax=Selaginella... [more]
A0A5J5BP11_9ASTE2.790e-3237.86VPS9 domain-containing protein n=1 Tax=Nyssa sinen... [more]
A0A4P9XSS2_9FUNG4.870e-3235.14VPS9 domain-containing protein (Fragment) n=1 Tax=... [more]
UPI001FB0693D7.390e-3237.38vacuolar protein sorting-associated protein 9A-lik... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1100contigEcto-sp8_S_contig1100:10181..17066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score740.7
Seed ortholog evalue4.3e-211
Seed eggNOG ortholog2880.D8LL30
Preferred nameVPS9
Model size1464
KEGG koko:K20131
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0003674,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006996,GO:0007033,GO:0007034,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019899,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0036010,GO:0042886,GO:0043130,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048308,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0098772
Exons9
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0666@1,KOG2319@2759
Cds size1464
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1100.1371.1prot_Ecto-sp8_S_contig1100.1371.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1100 10181..17066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143186.8323889-CDS-Ecto-sp8_S_contig1100:10180..105821681143186.8323889-CDS-Ecto-sp8_S_contig1100:10180..10582Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1100 10181..10582 -
1681143186.8438892-CDS-Ecto-sp8_S_contig1100:11183..113931681143186.8438892-CDS-Ecto-sp8_S_contig1100:11183..11393Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1100 11184..11393 -
1681143186.851847-CDS-Ecto-sp8_S_contig1100:12320..124251681143186.851847-CDS-Ecto-sp8_S_contig1100:12320..12425Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1100 12321..12425 -
1681143186.860238-CDS-Ecto-sp8_S_contig1100:13282..133661681143186.860238-CDS-Ecto-sp8_S_contig1100:13282..13366Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1100 13283..13366 -
1681143186.8689284-CDS-Ecto-sp8_S_contig1100:13719..138671681143186.8689284-CDS-Ecto-sp8_S_contig1100:13719..13867Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1100 13720..13867 -
1681143186.8782005-CDS-Ecto-sp8_S_contig1100:14567..146621681143186.8782005-CDS-Ecto-sp8_S_contig1100:14567..14662Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1100 14568..14662 -
1681143186.8867254-CDS-Ecto-sp8_S_contig1100:15377..155031681143186.8867254-CDS-Ecto-sp8_S_contig1100:15377..15503Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1100 15378..15503 -
1681143186.8967948-CDS-Ecto-sp8_S_contig1100:16143..162671681143186.8967948-CDS-Ecto-sp8_S_contig1100:16143..16267Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1100 16144..16267 -
1681143186.9063191-CDS-Ecto-sp8_S_contig1100:16896..170661681143186.9063191-CDS-Ecto-sp8_S_contig1100:16896..17066Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1100 16897..17066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1100.1371.1

>prot_Ecto-sp8_S_contig1100.1371.1 ID=prot_Ecto-sp8_S_contig1100.1371.1|Name=mRNA_Ecto-sp8_S_contig1100.1371.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=488bp
RGATAGSSNAFVGVPVSAVRNGREADTSPNGSAGATANNSGGGGGGGSGV
TAATMSGMMHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVF
DQAYGLAADPARDSSISTRLRSLGFLTEEHLGVPPLVDAQEDGAPTWADA
EAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGALPGADDFLPA
LILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEV
DASVLSIAHGDFERGLIQGFQESARVGLQAHQQEVKKEEEHARLLHSNSQ
GRANGPIPGSATTSASLSPPPSGDHASAGTAAAVGGGGGGEASAGSPGPA
PLPQPEPPRIIGTAEVRARRQAAAAAAEGAATTSLPFSSTAVSAASLAAG
GSGGTSGTGPSPRERRPSGRSRQRQQRNGGSKQQPAVLQQLRFVGCTAAE
LRMSEVPALLAEHNQLARLCERLLAEREEMTTPHRRR*
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mRNA from alignment at Ecto-sp8_S_contig1100:10181..17066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1100.1371.1 ID=mRNA_Ecto-sp8_S_contig1100.1371.1|Name=mRNA_Ecto-sp8_S_contig1100.1371.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6886bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1100:10181..17066- (Ectocarpus species8 EcLAC_412)
AGGGGAGCAACCGCCGGGAGTTCCAATGCGTTCGTAGGGGTGCCCGTCTC
AGCTGTAAGAAACGGGAGGGAAGCGGATACATCGCCGAATGGGAGTGCCG
GCGCTACTGCCAACAACTCTGGGGGCGGTGGTGGTGGTGGTAGTGGGGTG
ACTGCGGCGACCATGAGTGGGTGAGAAAAGCGTAGCCGATGGTGTTAAGC
GTTTATTCACGAGCTTGTCGGGCCGGTTAAGGACGAGTCTTTCGCGAGTG
CGACGAGTGTCGACCCGATCTAAGATGGGCGAGAAAAGTGTCGCCGCACT
AGTACTATTCATGTCGCCGCACTAGTACTGTTCGTGTCGCCGTACTAGTA
CTGTTCATGTCGCCGCACTAGTACTATTCATGTCGCCACACTAGTACTGT
TCATGTCGCCGCACTAGTACTATTCATGTCGCCACACTAGTACTAGTCAT
GTCGCCGCACTAGTACTAATCATGTCGCCGCACTAGTAGAACTCAAGGAC
CCTGCACCGCTGTAGCAGCTTGGTGGGGTGCAAGCTACAGCAGTGGCTCG
CTTTGTGGCCGCCAAGATCCTTGTCAAGAGACTTTGGCGGCATTTCTTCA
TGGGGTACATACAACCCGCATCGTTCTGCACCTACTGTTGATCCTTATCT
TGAGTTAGATTGGGACCACGGAGCGTAGTTTTTTTTGCCTGGGTGAGCAC
ATGTCGCAGCAGGTTTTTGTTGCTGTTTTAATGCCGCGGCAAACAACGAA
TCTTAATTCGGGGGCGACCCCGTGGTGTTGCAAATGCCCGTCGCCGCAGG
ATGATGCACGCCTTCTTGGGAAGGGTAGAGGCGCAGATGCGGGAAAGTGC
CCTGTGGCGAAGGGAGACCGAGGCCCAATGGGAGGACACCAGGGAAAGCC
TGGAGAGGATTGTGATGCACAAGGTGTCGCCATTGTTACAACGTTTGATA
TTCTCTACTATCAGTGTTGTTATTTTTTGCTGTGTTGTGATGTTACTCGT
ATCGTCATTGCGATTCATATTCTACATTCCATGAGGAGTTCTTGCCGCCC
TTGTTTCTCCCTTGATGGCCATGCTCCGGGATTTCACGCCTGCCCGGTTG
GATCGATTTTGGGGTATTTATTGCGTTAAGTGTAACAGCGACTTCTGAAG
ACGAAGGTCGAATTGGAGCAAAGCAAGGGATGAGCAAGCTACGGGGAAAG
AATGCGCTAGGCGTGGGAAGAATGGTGATATCGGTGCTTGACATGGATGG
GGGGTTAAGTTGCTCATCGTGGCCGCTTTTTGCGAGGACAGAACATGCCC
TGGACATGAGTTGCACGTGGGCATGCGGCAAGCACCGCAGAAACATGATC
ATCACAGCAACAACAAAACAACGGCAGTAACAACGACACCACCATCACCG
CCACCGCCACCACGACCATCACCTCACGTAAGCATTGTCCACTCCAGCAA
TACCTGCAGTAACAGCATCACCAGCACCAGCACCAGCACCACCAGAAATA
ACAGCAACAGAAACGACGATAACAACACCTACAACAGCACACGATAACAC
CGACAATCAACAGGTGTTCGATCAGGCCTACGGGCTCGCCGCGGACCCGG
CAAGGGACTCGTCGATCTCCACCCGACTCCGCTCGCTGGGCTTCCTGACG
GAGGAACACCTGGGCGTGCCTCCCCTTGTGGACGCGCAGGTGAACCGTGT
TTTTTGTCCCTTGCGTGATGCGGCGTCTTCGTTTGGAGGGCGGAACCGAG
CTTCAATTGCACAATCATTCCGTAAAAAGTGGTTTCGTGGAGGTTTACTG
CAGTGAAAGGCGTTGCGGCCTGTTGCGTCTCTGATGTCTTCTTGTGTTTG
GGTCATGTGCTGCTTCAATAAATGAACATTGCGAAAAAGTGATCGGAACA
TTCTTCGACACGGTCTTCCAAGTGCTGTAGCCTATGCATTGCTTGCTTCC
AGGAGCATGTTGCTTTCACGCGTAGCCTGCGCCTTGGCGGTTTGGCACGA
CCAGACGAAGAGCAGCATTATGTATCCTCTTGCCGGTCGCAGCGCCACCA
GAACATCCCTTGTTCTCGGTCTTCCGATTAGCACCGACGGGGACAAGAGC
AGGCAGCCCTCGGGTGATTGTGACACACGGCGGCATGCACACGAAGACTG
TTATCATTTTCGCGCGTACGTGTCGTTTCACGCCATCCAGACGAAGGAAC
ACTTGTTTTTCTTGGCCACATTCCTTGTCTGTTTTGTCTCTCCCCCTCCC
TCGTCGGTTTTGGTGTCAAGCAGAAAAGCTGATGCAAGGGTGCTGAATCT
GATTTTCTTTTTTAGCCTCCTCTCTCTTCCACACACATGGCAGCTTTTCT
GTCGTTTGACTGATTGATGCTGCTGCTGCACGAACCGTTACAACAACAAC
CCAGGAGGATGGAGCACCCACCTGGGCCGACGCAGAGGCTCAGCTCCTCA
AGATGTCACGGATGAGGTGCCCGGGAGACATGTTGCGGTGCATCGTCAAG
TGAGTCCCTCCGTTATTTCGCTCCCGTTTACCCAGGCAAAAACAAGAACG
GCAGCACGGCTGAACAGTCAGGGCTGTAGGTGGCCATTGGGAACGCCTGC
GGTGTGCACCCGTTGAATAGGGCACTGCAGCCTGCGTTTTAAGAGGTGGT
GTCCGGTTTTTGCGGTCCATCGCCTGTGTTTTAAGTTGAGCGGGCCGTGT
TTGGAAGGGATGCAAGTGTTGAGAGTGGAGGGAACAACAGGAAGCGTGAG
CCATACTGCTATACTTGTAGTGGGGTACCGATGGGCAGCAGGCTGAACCA
AGCCCTTCGTGAGAGCAGCGAGAGTGGGTAGTAGGCGACGAGTCGTGTGG
ACTAAGGGTATGTACGTACACAGTGCAGATAGCCAGGGGGAGATGGCGCA
ATTGCCACAGCCCACCCAAGTGCGAAATATCTCTTTCCTCACCCCCGCCA
TCACGTATTGCCATTCTTTCTGACGCGCGTAGGTGGGTTGTTGTTTGATA
AAAAGCACACTTATGGATATGTACGACTCGCGTTTTCCTACTCCCCCGCT
CCCCGGGAATACCCCCCCCCCCCCGCCGCCCGGCCGGCAAAACCCGGCTT
GTCGCTCCTCCGTCCCGGCGTTGTAGGGATGCGAGCTCTATGGTCTAATG
ACTACGGCATGCGTTTACATTAGCCCCCCCCCCCGCCTCCGCCCCCCAGG
TGCACGCGCATCGTGGCGGGCCTCCTCACGGGCGACCGGGCGGCCGGCGG
GGCCCTCCCCGGTGCGGACGACTTCCTCCCCGCGCTGATTCTGCTCGTCA
AGCGGGCCAACCCGCCAGGCTTGCACAGCACCCTGGAGTTTGTGCAGGTG
CGGAGCGGGGCAGGGGACAGAAAAACGACGCGCGATGGCAGCAGCACATG
TTCGACCGTATGTCTCGCGATTAAGACGAACGGAAGAGGCTGCCTGGTGT
CGTTGTGTTGGGTGTTGAGTCCCGAGTTCGAGGTGTTGCGCTGGATGGGT
GTGGATGGATTGACCGGTGAGGTGTGGATTCGGTGCGTATGGTTTTAGGG
ACGTTTTTTTTCGTATTGTTTAGGTACTGCCTCGTGCATGTGTGGCTCCC
CCTCCCCGCCACCCGCGGGAGTGTGTTGCGCTCTTCTTTGTTTACTTGTT
GGCCAATCAAATCACCGCTTTATTGTCACCAATCTCCTTCCCTCGTGCAG
AGCTTCCGCGACCCGTCCAAGCTTCTATCCGAGGCGGGCTACGTGCTGAC
GCAGCTCGTCAGCGCCGTTTGTTTTCTCGAAGAGGTAGGTGGGTCGGTCG
GTCGGTCGGTCGGTCGATGGGTTTAACCAAGAAACAAGGGGAGGGGGCGT
CGGGGGTAGCTCGATGTTGCCAAGCCACTCGTCGCATGTTGAGTTGACCT
TGCATCCGTTTGGAGGAGAGGGAGCCCCTTCCTCTAAGCTTGTTGTGTAC
CGCTACGGGTTCGGGGACGTGTCACCCCTGTCACGATTTGTTGTATCAAG
TGACCCGAAACGCTGACGGTACACGCCGCCAGTGCTGTCGACCATCTCAC
GGCCGGTCGACGACACGAGCAGAGCATTCTAGACACCCTCCTCCGTTTGT
TTTTAGCCCTGCGTACATGTTGGAGAGATGGCACCCCCATGTTAGTTTTT
TTTATCAGCGTATTTCTTCACAACCAACAGTGGGTACCACTGCCGAAAAG
GGTAGTTTTGGAAACATCTCGTCGAGGACTTTCCTGATAGGTATCATCGG
TTGGTGTTTGCACCCTTTAACCTGTGGAGAAATACGCTGTAAGAAAACGT
TAACACGGGGGTGCGCCATCTCTCGGACCCTCACCGTACGACTGCAAGCA
TTGGTTGTTGTCTGGCGGACCATTGCTGGTCGAAAACCACGTGCGAACCA
ACAGAAGTTGTCTTGCACACAACGACCCGGGTGAGGGTCTTGTGCCTACA
CGTGATCTGCACACACCTGCGGGGTGAACGTGTTGTGCACGTACGTTGTC
TGCACGCAGGTAACAGGGGAACACGTTGTGCTACATCTTCGAAAACAGTT
GCACTTACATAGCCAGTTTGACAATCGTACCGGATGCAACAAGAGCCAGC
GCAACCGAATATTTCGCGATGTACAATGTGCACGCTGGCAGGTGGACGCC
TCGGTGCTGAGCATCGCCCACGGGGATTTCGAGCGAGGCTTGATCCAGGG
CTTCCAGGAAAGCGCCAGGGTTGGCTTGCAGGCGCACCAGCAAGAGGTGT
GTGTACGTATGGTGTGTCTTTTATTAATGGCATCGAACGCGCCAAGCGGC
TGACCGAATGGAAAGGCGTCAGTCAAAGTGCGGCTGAAAACAGAAAGCGT
TTTTTTATGTGTATGGTCTGAGACCCCATGTTTGTGTGTGTGTGCGTGCG
TTTTTTTTGTTTCGACATGCCGTCGCATTTCGCGCTACCCTACGCACATC
CAATAAGATTTTGTGTTGTCAGTGTCCATGCGCGTGGCACATCATGCTCG
CCGTGTTCGCATGGCGCAATCACGTCTCTCCGCGCCGACTGCCTTGACGT
CACAAGTGGTGCTACTTAAGAAGGAAGTATCACCTCGGTCTTTCCGCACA
GTCACTTTGTGGTTTCGACGTTTGGATGGCAACCTTTTTCGCCGTGTGGA
ACCAAGCGGCGAATCTCTCCGTCTATCTCTTGTGTGTGTTCGTAGGTTCA
GGGTTGGCACGGGCTGTCCGTACGATGCCACACCTGCAGGAAGACTGTTT
GGCGATCGACGTGTGTTTTTTGTTGAATTTCGCCTGCTGAGTGGAGCATA
TTGTTTTGTATTTCTGTGGCCCTTTGGGCGTCAGGCGGCAAGCGGTACAA
AGAAAATGGCGCACACGGTATCCAATTTCATGGTTTCGTCATCTACAAAC
ATGCTCCAAGAGTAACTAAGGAGACAGGGATAATGAACGGATGCGTTCCT
TAGATCACGTTTTTGATGGCCCGCCCCACCCGTCCCATCCACGCCTACCT
GGCGTCAAAATTGTCCCAAAAAATAGACGCAGAAGCGACGCCCCATCCGT
GTCGCCATATGTTGATGAGTGAGACAGTGATTTACTCTCCGTTTGGCATA
TATATAGCATTAAACCCTTCGTTTATTCGGTGCCTTGTGTCTGCCACGGC
AAACGTGCAAAAAAACTCTCCAGGTCAAGAAGGAAGAGGAGCACGCACGC
CTGCTTCATAGCAACTCCCAGGGCCGCGCCAACGGCCCTATTCCCGGGTC
CGCGACAACCTCGGCTTCGTTGTCACCGCCGCCATCTGGCGATCACGCTT
CTGCGGGCACGGCTGCTGCGGTCGGGGGGGGTGGAGGAGGGGAGGCTAGT
GCTGGCAGCCCCGGACCCGCTCCTTTGCCACAGGTTGGTAGCCGCTGTTT
TGCTTGGTCTTGTGGGTGCTGTAGTTGGGTGTGCTTGGTCGTGTGGGCTG
CTGTAGTTGGCTGTGCTTGGTCGTTGCGGGAAGATTGGTGTTCCCCTCGC
GTCTCGTTCGCCCCCTCCCGTAGGCTTGAAATCATTGTGGTGTGGTGCAA
ATCTACGAAACACTCCACCTAGAATCGTTGTTCAGAACCTTTCGACCTAC
GTGCCCGTCCTATCGGATCGAATCGAGATCCAGACCGGCTCCAAGGGTTA
GCGACAAGGGTTCGGATGCAGCCATGCTAGTGCTGGCCCCATGAGCGTAG
ATGGACGTGGTGGACTTGACAGGACTGGAATCGGGAAAACGAGTGATAGC
ATACCCGAAGAGCGCGGATGTGGTGACATGTACGGCAAAAGCGATGTGCA
CAGCAGCCAGTTCATTGCAGCGGGCCCTGGAGATGACGTGGCCGTAGAGG
CAAAAATGCGCATTGTGTGTACACGCTTTGACACGTGGCTTTGCCCGATT
TGTGGTCATCGGTTCCCTCCTATTCTCCCTCTCGTTTTTGCCTCCACCCG
CCGTTGTCGAATTCCTTAACTTGGCGCGATGCAGCCGGAGCCGCCTCGAA
TAATCGGGACGGCCGAGGTGCGTGCCCGGCGCCAAGCTGCAGCAGCAGCG
GCGGAAGGAGCGGCGACAACGTCGTTGCCCTTCAGCAGCACTGCTGTGTC
CGCGGCGTCACTAGCAGCAGGAGGAAGTGGAGGAACGTCAGGCACTGGGC
CTTCTCCTCGCGAGCGGCGCCCTTCTGGTCGAAGCCGACAACGACAGCAG
AGGAATGGCGGCAGCAAGCAGCAGCCGGCGGTGCTTCAGCAGCTCCGGTT
CGTCGGGTGCACGGCGGCGGAGCTGCGGATGTCGGAGGTGCCCGCCCTCC
TGGCCGAACACAACCAGCTCGCTCGGCTGTGCGAGAGGCTCCTTGCGGAG
CGGGAGGAGATGACTACGCCACACCGCCGCCGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1100:10181..17066-

>mRNA_Ecto-sp8_S_contig1100.1371.1 ID=mRNA_Ecto-sp8_S_contig1100.1371.1|Name=mRNA_Ecto-sp8_S_contig1100.1371.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1100:10181..17066- (Ectocarpus species8 EcLAC_412)
AGGGGAGCAACCGCCGGGAGTTCCAATGCGTTCGTAGGGGTGCCCGTCTC
AGCTGTAAGAAACGGGAGGGAAGCGGATACATCGCCGAATGGGAGTGCCG
GCGCTACTGCCAACAACTCTGGGGGCGGTGGTGGTGGTGGTAGTGGGGTG
ACTGCGGCGACCATGAGTGGGATGATGCACGCCTTCTTGGGAAGGGTAGA
GGCGCAGATGCGGGAAAGTGCCCTGTGGCGAAGGGAGACCGAGGCCCAAT
GGGAGGACACCAGGGAAAGCCTGGAGAGGATTGTGATGCACAAGGTGTTC
GATCAGGCCTACGGGCTCGCCGCGGACCCGGCAAGGGACTCGTCGATCTC
CACCCGACTCCGCTCGCTGGGCTTCCTGACGGAGGAACACCTGGGCGTGC
CTCCCCTTGTGGACGCGCAGGAGGATGGAGCACCCACCTGGGCCGACGCA
GAGGCTCAGCTCCTCAAGATGTCACGGATGAGGTGCCCGGGAGACATGTT
GCGGTGCATCGTCAAGTGCACGCGCATCGTGGCGGGCCTCCTCACGGGCG
ACCGGGCGGCCGGCGGGGCCCTCCCCGGTGCGGACGACTTCCTCCCCGCG
CTGATTCTGCTCGTCAAGCGGGCCAACCCGCCAGGCTTGCACAGCACCCT
GGAGTTTGTGCAGAGCTTCCGCGACCCGTCCAAGCTTCTATCCGAGGCGG
GCTACGTGCTGACGCAGCTCGTCAGCGCCGTTTGTTTTCTCGAAGAGGTG
GACGCCTCGGTGCTGAGCATCGCCCACGGGGATTTCGAGCGAGGCTTGAT
CCAGGGCTTCCAGGAAAGCGCCAGGGTTGGCTTGCAGGCGCACCAGCAAG
AGGTCAAGAAGGAAGAGGAGCACGCACGCCTGCTTCATAGCAACTCCCAG
GGCCGCGCCAACGGCCCTATTCCCGGGTCCGCGACAACCTCGGCTTCGTT
GTCACCGCCGCCATCTGGCGATCACGCTTCTGCGGGCACGGCTGCTGCGG
TCGGGGGGGGTGGAGGAGGGGAGGCTAGTGCTGGCAGCCCCGGACCCGCT
CCTTTGCCACAGCCGGAGCCGCCTCGAATAATCGGGACGGCCGAGGTGCG
TGCCCGGCGCCAAGCTGCAGCAGCAGCGGCGGAAGGAGCGGCGACAACGT
CGTTGCCCTTCAGCAGCACTGCTGTGTCCGCGGCGTCACTAGCAGCAGGA
GGAAGTGGAGGAACGTCAGGCACTGGGCCTTCTCCTCGCGAGCGGCGCCC
TTCTGGTCGAAGCCGACAACGACAGCAGAGGAATGGCGGCAGCAAGCAGC
AGCCGGCGGTGCTTCAGCAGCTCCGGTTCGTCGGGTGCACGGCGGCGGAG
CTGCGGATGTCGGAGGTGCCCGCCCTCCTGGCCGAACACAACCAGCTCGC
TCGGCTGTGCGAGAGGCTCCTTGCGGAGCGGGAGGAGATGACTACGCCAC
ACCGCCGCCGGTAG
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