mRNA_Ecto-sp8_S_contig10999.1365.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10999.1365.1
Unique NamemRNA_Ecto-sp8_S_contig10999.1365.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10999.1365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10999contigEcto-sp8_S_contig10999:1152..3648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2497
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_003190.1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143186.2680004-UTR-Ecto-sp8_S_contig10999:1151..11691681143186.2680004-UTR-Ecto-sp8_S_contig10999:1151..1169Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10999 1152..1169 +
1681143186.2853453-UTR-Ecto-sp8_S_contig10999:1574..36481681143186.2853453-UTR-Ecto-sp8_S_contig10999:1574..3648Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10999 1575..3648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143186.2763543-CDS-Ecto-sp8_S_contig10999:1169..15741681143186.2763543-CDS-Ecto-sp8_S_contig10999:1169..1574Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10999 1170..1574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10999.1365.1prot_Ecto-sp8_S_contig10999.1365.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10999 1170..1574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10999.1365.1

>prot_Ecto-sp8_S_contig10999.1365.1 ID=prot_Ecto-sp8_S_contig10999.1365.1|Name=mRNA_Ecto-sp8_S_contig10999.1365.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=135bp
MSLFGSFEMVFGKYWDHWRYARWYPNGPLYVLSNGGVALSVMVAAQDFLG
NVRKFRNHLGLFTLIGIQTIPCIFQPRGFSVTVEAYASVGNHSDGRRGAC
LVVVLVSHRKKADLIYYRWAKRGGRSVVCRSSPT*
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mRNA from alignment at Ecto-sp8_S_contig10999:1152..3648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10999.1365.1 ID=mRNA_Ecto-sp8_S_contig10999.1365.1|Name=mRNA_Ecto-sp8_S_contig10999.1365.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2497bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10999:1152..3648+ (Ectocarpus species8 EcLAC_412)
ACAGACACACCGCCATCGATGTCGTTGTTCGGCTCTTTCGAGATGGTGTT
CGGAAAATATTGGGACCATTGGAGGTACGCACGTTGGTATCCAAACGGCC
CCTTGTATGTTCTTTCCAACGGGGGGGTGGCGCTCTCAGTTATGGTGGCA
GCACAAGATTTTCTAGGCAATGTTCGGAAGTTTAGGAACCATTTGGGGTT
GTTCACATTGATTGGTATCCAAACGATCCCTTGTATTTTCCAACCGCGTG
GTTTCTCGGTTACGGTGGAAGCGTACGCTTCTGTAGGCAATCACAGCGAC
GGCCGGCGCGGCGCGTGCTTGGTGGTCGTGTTGGTAAGTCACAGGAAGAA
GGCCGATCTTATCTATTATAGGTGGGCGAAAAGAGGAGGGCGGAGTGTTG
TTTGTCGCTCGTCGCCGACGTGAGTTTCGTTTGAGTTTTTTTTTGCGCTT
GTTTTTGGTGTTTAAGAAAAAGCGGTGTGGGGTGTTGTTTGCCGCTTGTC
GCCGACGCGAGTTTCGTTCGAGGCGTATCTTTGCGTTTTTTTTTTTTTCG
TGCTCGATGGTGGCCGATGTACCGGAAGCAGGCGGCAGAGAGGCCTGCCC
GCGCGTGAATGCCGCCGTTGGGGCCACGTTCTTGAGAGGGTAGAAGGGAA
GGTAGGCATCTTAGGTAGCACGTGTAGTTAGACACCCACCCGCCCGTTGA
AGAAGAAATCGTCCCTGCACTGTTGAAGCGTTGGAATGCCAGGCCCGCAG
AATACCCCCCCCCCCCAGATTTCCCCCCCACCCCTTTTCGTTTCGATTAC
CTACCACCGCAGCGTGAAGTAATTCATGTTATCTTGTTTCGGGAACACGT
GTGTGATCTCCTTTCGTTTTTCCATCTCTGGCAATGTTGTTTTCGATGTG
TGTTTTTCGTCCCGTGGCTTGGTACCCTAGAGTAGTAGATGTTGTGGCTC
GTGTTATTCTAGAATATCATGTCAAAGCAACACGCCGTCGGGCTCGCCCG
GCCGTTTGTTGTTGTAGATCTCATAGATGTGGTTACTTGCCAGTGTTGTC
ATTGTTTTGTGTAAATATAACTTCGTTTCGCCGGGGGTCTTCGCGAAAAA
ATTGTAGGTGTGGAGAGCGGTAGACCGCGTGCGAGAAACACATGTAGAAA
AAAAAGGAGATTAATTGTCCTAGAGTTGAAGTATTTGTTGTTCGTTGTTC
TTGTATGGTGTTTTGGCTCTGCGGCCTGCTCCCGTACGGTACTATTCTCT
TCTTGTTGTGCACACATTTTTTTATTGCGGTTGGTTTGTATTTATGCTTT
TTTTTCCAGTTTCGCTTGTTGGCTTGCGCTCGGTCGTGCTAGAAAACATG
GCTTAGGTCATGTTTCATGGCTCAGGCCGTGTTGTATAGATGCTTTTCCT
CTGCGCCCCGTGCAGTATATGCTCTGCTTGTTGTGCACACGTTTTTTTTA
CTGGTTATTCGTATGTTTTTTTCGGTTATTATTCTTGTTGGCTTACGCTT
GGTCTTGCTGAAACATCGCTCCCTCTTTGTTCGGAATATTCATTTGTATT
GTGAGTAGATCAAACGCGCAGGTTTGATAGTTTTGCTTTGGTTTTCGATA
GGAATCTACGATCTATCTATCTATGTAGATAACGTTTTCCTGCCTGTTGC
AGATAACGTTTTCCATCAACAGCTCACAACGAAACCGACATTGTAGAGAG
CGAGGTCGCCATGACCACAGATCATCCATGATGGATCTACTATCTATGTA
GGCACAGGGAGACCTGCCTATCGTCGCCGATAACTTTTGCCAGACAGAAG
GGGGCAGTCAAAAACTCACAACGAGACCGACATGTTAGAGAGAGAGGTCG
CGGCATGACCACGGATCATCAATGAGGGTAGTTGCACTTTCGAGCAAGTT
TTAAATGAACACTCTTTTGGGTCGTCATTTTTCATTCGTTTTAAGAGTAG
CCCCTCTGGTCCAGGCCCTCTGTTAAGGGGTATATTATCTAGGTGTTGCG
GGATTTTTTGTTTGGGGCACCCTCGATGATCCAGACTTCGGTCTTCGATT
ATATTTTTTAGTCAGGTTAGTTAAATATAGTGCGATTTACCTTCTTTTTT
TTCGTGTACCCCGCAAGAGTTGGCTCTCGTGTTGTTTGGTTGCTTCATGG
AGTAGGCTGTGTGATATGGTATTCGGAAGTAGCCGTGTGTGACGTGACGG
TGCTTTACGACGGTTATTTTGCGTCGTCGGTTGCCATACACTCACTGCTG
TGTTTGGACGTCATGATACGTGAGAGATGCAGGAGTTACTCAGAAGCTTG
TGCCCACAAACATGTGTTTCAGTGGTTGCCATACACTGGCTGCGTTTGGA
CGTCATGATAAATGAGAGATGCAGGAGTTACTCAGAAGCTTGTGCCCACA
TACATGTGTTTCAGTGTTGGATTGAAACCGATCTCCAGCATGTAATAATC
TAGGCTGCATGGTGTACATGCGAAGCGATAATCAAGCTCAAACACGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10999:1152..3648+

>mRNA_Ecto-sp8_S_contig10999.1365.1 ID=mRNA_Ecto-sp8_S_contig10999.1365.1|Name=mRNA_Ecto-sp8_S_contig10999.1365.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10999:1152..3648+ (Ectocarpus species8 EcLAC_412)
ATGTCGTTGTTCGGCTCTTTCGAGATGGTGTTCGGAAAATATTGGGACCA
TTGGAGGTACGCACGTTGGTATCCAAACGGCCCCTTGTATGTTCTTTCCA
ACGGGGGGGTGGCGCTCTCAGTTATGGTGGCAGCACAAGATTTTCTAGGC
AATGTTCGGAAGTTTAGGAACCATTTGGGGTTGTTCACATTGATTGGTAT
CCAAACGATCCCTTGTATTTTCCAACCGCGTGGTTTCTCGGTTACGGTGG
AAGCGTACGCTTCTGTAGGCAATCACAGCGACGGCCGGCGCGGCGCGTGC
TTGGTGGTCGTGTTGGTAAGTCACAGGAAGAAGGCCGATCTTATCTATTA
TAGGTGGGCGAAAAGAGGAGGGCGGAGTGTTGTTTGTCGCTCGTCGCCGA
CGTGA
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