mRNA_Ecto-sp8_S_contig10996.1362.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10996.1362.1
Unique NamemRNA_Ecto-sp8_S_contig10996.1362.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Match: A0A6H5KCR2_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCR2_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 9.810e-63
Identity = 101/106 (95.28%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:   67 DTPKVYDVSSYLNDHPGGAEVMMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAKKAERASRQGGGLNPLAVLVLLMAISVGYYYSNQKA 384
            DTPKVYDVSSYLNDHPGGAEVMMEVAG+DATNMFEDIGHSSDARTEMKKFQIGLLKLTDEE+AKIAQ+AAKKAERASRQGGGLNPLAVLVLL+AIS+GYYYSNQKA
Sbjct:   35 DTPKVYDVSSYLNDHPGGAEVMMEVAGQDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEERAKIAQEAAKKAERASRQGGGLNPLAVLVLLLAISIGYYYSNQKA 140
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BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Match: A0A7S2R750_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R750_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.220e-24
Identity = 51/102 (50.00%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:   73 PKVYDVSSYLNDHPGGAEVMMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAKKAERASRQGGGLNPLAVLVLLMAISVGYYYSNQ 378
            PKVYD++ YL+DHPGGAEV++++AG+DA   FEDIGHSSDAR E+K++ IG LK+ + E A+ A  A  KA++ +   GG N + +L+ ++AI+ GYY +  
Sbjct:   78 PKVYDITKYLDDHPGGAEVLLDLAGQDADEFFEDIGHSSDARDELKRYLIGALKIDEAELARRAAAAEAKAKKEAE--GGSNLVFILIAILAIAFGYYKTQM 177
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BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Match: A0A1E7F1Z9_9STRA (Cytochrome b5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F1Z9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.040e-24
Identity = 52/100 (52.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:   76 KVYDVSSYLNDHPGGAEVMMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAKKAERASRQGGGLNPLAVLVLLMAISVGYYYSN 375
            KVYDVS YL+DHPGGAEVM++V+G++A   FEDIGHS DAR E+KK+ IG  KL++EE  K+  +A K+A+    QGGG +P+ +++L+  I++ Y Y+ 
Sbjct:   39 KVYDVSKYLDDHPGGAEVMLDVSGQNADEFFEDIGHSGDARKELKKYLIGTYKLSEEEIEKLKIEAEKRAQ----QGGG-SPMIIIILVALIAIIYAYTQ 133
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BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Match: A0A7S1E0H8_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E0H8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.150e-24
Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:   73 PKVYDVSSYLNDHPGGAEVMMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAKKAERASRQGGGLNPLAVLVLLMAISVGY-YYSNQK 381
            PKVYDV+ YL+DHPGGAEVM++VAG+DA   FEDIGHS+DAR E+K+  IG L + D  KAK+  DA K  ++   + G L+P+ ++VL+  +++G  YY +Q 
Sbjct:   35 PKVYDVTKYLDDHPGGAEVMLDVAGQDADEFFEDIGHSADAREELKRHLIGDLLMDDATKAKMKADAEKALKK---KEGSLSPVLMIVLVAILAIGAKYYMSQS 135
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BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Match: A0A7S3P723_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P723_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.660e-24
Identity = 50/104 (48.08%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   73 PKVYDVSSYLNDHPGGAEVMMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAKKAERASRQGGGLNPLAVLVLLMAISVGYYYSNQKA 384
            P VYDV+ YL+DHPGGAEVM++VAG+DA   FEDIGHS +AR E+KK+ IG LK+ +  K K+ ++ A+KA   + +GGG   + ++ +++A++   Y S  KA
Sbjct:   36 PMVYDVTKYLDDHPGGAEVMLDVAGQDADEFFEDIGHSKEAREELKKYLIGSLKIDEATKKKMEEEKARKA---AAKGGGFPLVPLVGIILAVAAYLYVSQSKA 136
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BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Match: A0A7S2U5A0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5A0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.180e-23
Identity = 49/102 (48.04%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:   73 PKVYDVSSYLNDHPGGAEVMMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAKKAERASRQGGGLNPLAVLVLLMAISVGYYYSNQ 378
            PKVYD++SYL+DHPGGAEVM++V+G+D    FEDIGHS+DAR E+KK+ IG LK+ +   A+  + A +K E A   GG    + +L+ ++A+ +GYY +  
Sbjct:   25 PKVYDITSYLDDHPGGAEVMLDVSGQDGDEFFEDIGHSNDAREELKKYLIGTLKVDEATLARNLELAKRKQEGA---GGSGQMMVLLIAILALIIGYYKTQM 123
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BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Match: A0A448ZES5_9STRA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZES5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.630e-22
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:   73 PKVYDVSSYLNDHPGGAEVMMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAKKAERASRQGGGLNPLAVLVLLMAISVGY 363
            PKVYDVS YL+DHPGGAEVM++V+G++A   FEDIGHS++AR E+KK+ IG  K+++EE  K+   A K+A     Q GG + + ++V L+AI   Y
Sbjct:   36 PKVYDVSKYLDDHPGGAEVMLDVSGQNADEFFEDIGHSAEARAELKKYLIGTYKMSEEELEKVRIAAEKRAN----QTGGSSVMIIMVALVAIIYAY 128
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BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Match: A0A7S2GEW6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GEW6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.880e-22
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:   76 KVYDVSSYLNDHPGGAEVMMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAKKAERASRQGGGLNPLAVLVLLMAISVGYYYSNQK 381
            KVYDVS YL++HPGGAEV+M++AG+DAT MFEDIGHS  AR +M+  +IG +KLT+EE      +AA K +  +   GG  P+  ++      V YY +N K
Sbjct:   57 KVYDVSKYLDEHPGGAEVLMDIAGQDATTMFEDIGHSQTARKQMESLEIGAVKLTEEE-----LEAAMKEDEKAASSGGSFPILPIMXXXXXXVIYYVTNMK 153
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BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Match: A0A4D9D6Z9_9STRA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6Z9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.490e-22
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   73 PKVYDVSSYLNDHPGGAEVMMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAKKAERASRQGGGLNPLAVLVLLMAISVGYYYSNQ 378
            PKVYDV+ YL +HPGG+EV+++ AG+ A  MFEDIGHS DA+ ++K   +G  +LT E+  K+A +   +A     +GG LNP AV+VLL+AI +G Y S Q
Sbjct:   32 PKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVG--ELTPEDVEKLASEKVSRASELPSKGG-LNPFAVVVLLVAIVLGLYLSKQ 130
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BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Match: A0A7S1YP05_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YP05_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.240e-21
Identity = 52/102 (50.98%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:   76 KVYDVSSYLNDHPGGAEVMMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAKKAERASRQGGGLNPLAVLVLLMAISVGYYYSNQK 381
            KVYDV+SYL+DHPGGAEVM++V G+DA   FEDIGHS+DAR E+ K  +G+LKLT+EE                   GG++ +AVLV   A  +GYY+  QK
Sbjct:   70 KVYDVTSYLDDHPGGAEVMLDVGGKDADEFFEDIGHSNDAREELAKHVVGVLKLTEEE---XXXXXXXXXXXXGADSGGMSMIAVLVA--AAGIGYYFYKQK 166
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10996.1362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCR2_9PHAE9.810e-6395.28Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S2R750_9STRA1.220e-2450.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1E7F1Z9_9STRA3.040e-2452.00Cytochrome b5 n=1 Tax=Fragilariopsis cylindrus CCM... [more]
A0A7S1E0H8_9STRA4.150e-2450.96Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S3P723_9STRA9.660e-2448.08Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A7S2U5A0_9STRA3.180e-2348.04Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448ZES5_9STRA1.630e-2251.55Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S2GEW6_9STRA2.880e-2249.02Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9D6Z9_9STRA4.490e-2250.00Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S1YP05_9STRA1.240e-2150.98Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10996contigEcto-sp8_S_contig10996:269..2687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score159.5
Seed ortholog evalue7.2e-37
Seed eggNOG ortholog2880.D7FNS4
Model size849
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.heme binding
EggNOG OGsCOG5274@1,KOG0537@2759
Cds size258
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143186.053097-UTR-Ecto-sp8_S_contig10996:268..3971681143186.053097-UTR-Ecto-sp8_S_contig10996:268..397Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10996 269..397 +
1681143186.1038394-UTR-Ecto-sp8_S_contig10996:2225..26871681143186.1038394-UTR-Ecto-sp8_S_contig10996:2225..2687Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10996 2226..2687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143186.0657403-CDS-Ecto-sp8_S_contig10996:397..5021681143186.0657403-CDS-Ecto-sp8_S_contig10996:397..502Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10996 398..502 +
1681143186.0803642-CDS-Ecto-sp8_S_contig10996:1530..16541681143186.0803642-CDS-Ecto-sp8_S_contig10996:1530..1654Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10996 1531..1654 +
1681143186.089757-CDS-Ecto-sp8_S_contig10996:2196..22251681143186.089757-CDS-Ecto-sp8_S_contig10996:2196..2225Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10996 2197..2225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10996.1362.1prot_Ecto-sp8_S_contig10996.1362.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10996 398..2225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10996.1362.1

>prot_Ecto-sp8_S_contig10996.1362.1 ID=prot_Ecto-sp8_S_contig10996.1362.1|Name=mRNA_Ecto-sp8_S_contig10996.1362.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=86bp
MMEVAGEDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQDAAK
KAERASRQGGGLNPLAVLVLLMAISVGYYYSNQKA*
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mRNA from alignment at Ecto-sp8_S_contig10996:269..2687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10996.1362.1 ID=mRNA_Ecto-sp8_S_contig10996.1362.1|Name=mRNA_Ecto-sp8_S_contig10996.1362.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2419bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10996:269..2687+ (Ectocarpus species8 EcLAC_412)
ACCACAACAACCACAACAACCACAACAACCACAACAACAAACACGACGAC
GGCAACGATAACCTCAGACACCCCCAAGGTTTACGACGTGTCGAGCTACC
TGAACGACCACCCGGGGGGCGCGGAGGTGATGATGGAGGTGGCCGGGGAG
GACGCGACTAACATGTTCGAGGACATCGGGCACTCCTCGGACGCAAGAAC
GGAGATGAAGAAGTTCCAGATAGGGCTGCTCAAGGTGCGTCTGCTGCGCG
TCGTGTGAGCGTCTGCTTGCTTCGCGGTTTCGCTTCTTCGCTGCTGTGTC
GCTGTAGCGTCGACCGATGTCAACACCAATTGTAAGACTCGAGTCTCAGC
GGGACATGAAATCCCGGAAACGCCTTCGGTTTTGTCCTTTGCCCCTCTGT
TGTCTCTTGCTTCTTGCTGCTTGCTGTGCTCTTTCTCGGCTTTTTGTTTC
CTTTGCCGTGCTTGGTTCGCCAACAGTAGTTATTTCTATGGACCACCTTT
AACGATAGGTCAATCAATGCGCTAGTCAAATCACAACCCATTCTCAAATC
GCAACCCATGAAGGGTGCGGCCGACGAGGAGCACAAGGACCAGAAGGAGA
AGGAGGAAGGGACCGCCCTCATCCTTCACGAATTGCGATTTGAGCATGGG
TTGCGATTTCCTGTCGCTTCGTCCTTCTGCTTCTCGTGGTTGCCCTTGTG
CTCGTCGTCGGCCGCATCCTTCACGGATTGCGATTTGACTAGCGCGTGAA
CGGATTGGCCTATCGGTAAAGGTTGTCCATGGGAATAGCTGCTGGTGTGC
TACAAGGAGAAGACTCAATACTGTCGGCAGCATTGCTGCTCCATCATGCC
GTTCTCTCAGACGAACGTCATTGTACAGTCTCACCTTCGTTTTCGCCCCC
GTTCCGATTCGAGGTGTGTGAGTGCCGAGAGCGTGAGCTTGAAAAATCAT
GAGCCAATGAACCAACCCATGACAATTATTCTTGTTTGCCAACTCCCAAA
AAAACAAGTATTTGGGAACGAACAAATAATCACCAATTGGTTAGCCTGGG
ACCCTCTCAAATCGGTTTCTGTACCTTGCACCGCACGGAAGAAGAGATAC
TGGATGGCACTCCTCACAGCGAATTTGAAAAAAACGGCAATAACAAAAAC
ATTTTGTCATACATAAACGGACCAAACTACTACTAATGCTTATTGCTACT
CGGGGGCCCTTTTTCATTGCTGCTGCTGTACTGTATTGCTGCTGCTGCAC
TGTATCGGGCAGCTGACAGACGAGGAGAAGGCTAAGATTGCGCAGGATGC
GGCGAAGAAGGCCGAGCGGGCGTCGCGACAAGGGGGAGGGCTCAACCCCC
TCGCGGTGTTGGTTTTGCTTATGGCCATCTCAGTCGGTGAGAACAAGCGA
TGTGTCCATGTCCATTTTTGCTGCGTGTCGTCGCTTGTCGCCATCTCAGT
TGGTAGGAATGAGCGGTGTTCTCGTGCTCACTGCTATTTGCTTGCTTTCG
GGCGCCACTGTAGTAAACGAGGCGAGGGCGAGCGACTGTTCCGGAGTATC
GACGCCCCCGTGGCAATAGAATGATGCTTCGTTGTTGTCGGTCCTTCGTG
TTCTTTTGAGGGTTTCGTGTCGTTCGCCCTGGTCTACTTTTTGATGAAAG
GCACTTCCCTGCTTTCGAACTTCTGGCCCTAGAAACCCGGAGCAAGGTTG
ATAAAACGCACTTCGACGGTGTTGTTGACGCAAAGATCGCAATAATTGTG
CACGTTTGCGCAGATATGTGTGGGTTGATGTTGTTGGCTGGTAAATATGG
ACCTCTTGAGCCCATCTCTCGTCTCCTTCCCGTCTCCCCTTCCCCCCTCT
CGTTTTGTCTCCCAACACTCAATACTCACGACGTGTGCGCGCGCGTGTGT
GTCAAATTCTCCGTATCCACTCTCCCAGGGTACTACTACTCCAACCAAAA
GGCGTGACCAGTGACGTCATGACTTCCTTGTGCTCGGGTTATTTGTTTTC
GCCGGTGGGGTAGTTGCTCCTCCCCGCCCCTAGCATCTAAACTTCCTAGA
TGTCTCTCTCTACCGAGAGCTTGAGAACGTGGGAGCGAACTAGAGTTTCT
GGTTGCGACACCGCGAACGGCAGCTAAATAGGTGCTTGCCGGGCGCTGTG
CTTGCTTTCACGCTTTTTCATGGCGTTTCGACCGTTTTCTGAAGCCGAGA
CACGCTGAGGAGGGCGGGGCATACGGGTGCGAATGTTCCCGTGACGATTA
ATTGGTCGAGCCTTTCCGGCGTTGGTCGCGGCTCCCGCCAGGGGTGGGAA
AAGGAGGCGGGCGGACCATCGCCCTGGAATAGAATAGCGAGTCGGTGCAT
GGTAGGGGTTCGTGATCACATTTCTGTTTACTTCGTGTAATGAGCACGAG
GGCCGGCCGCAGGAGAGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10996:269..2687+

>mRNA_Ecto-sp8_S_contig10996.1362.1 ID=mRNA_Ecto-sp8_S_contig10996.1362.1|Name=mRNA_Ecto-sp8_S_contig10996.1362.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10996:269..2687+ (Ectocarpus species8 EcLAC_412)
ATGATGGAGGTGGCCGGGGAGGACGCGACTAACATGTTCGAGGACATCGG
GCACTCCTCGGACGCAAGAACGGAGATGAAGAAGTTCCAGATAGGGCTGC
TCAAGCTGACAGACGAGGAGAAGGCTAAGATTGCGCAGGATGCGGCGAAG
AAGGCCGAGCGGGCGTCGCGACAAGGGGGAGGGCTCAACCCCCTCGCGGT
GTTGGTTTTGCTTATGGCCATCTCAGTCGGGTACTACTACTCCAACCAAA
AGGCGTGA
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