mRNA_Ecto-sp8_S_contig10991.1357.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10991.1357.1
Unique NamemRNA_Ecto-sp8_S_contig10991.1357.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10991.1357.1 vs. uniprot
Match: D7G2K5_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K5_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 2.450e-43
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 1
Query:    1 EITCYDLTPLGVLNAHNSVDTDNLKRVRDLLHNAPADRAWRRRGFLVPCRAFPDGMHQNVGSNTPTAHAAVAAEGSPEAHPRS 249
            EITCY LTPLGVLNA+NS++TDNLKRVRDLLHNAPADRAWRRRGFLV CRAFPD MHQNVG+NTPTAHAAVA E  PEAHPRS
Sbjct:  228 EITCYGLTPLGVLNAYNSMNTDNLKRVRDLLHNAPADRAWRRRGFLVLCRAFPDRMHQNVGNNTPTAHAAVAGEEPPEAHPRS 310          
BLAST of mRNA_Ecto-sp8_S_contig10991.1357.1 vs. uniprot
Match: A0A6H5JQY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY3_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.130e-42
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 1
Query:  166 MHQNVGSNTPTAHAAVAAEGSPEAHPRSRPRLETPPKSGAGCNSSAAGVEGGQSGICELGSDSPRPGGLNGDLAAWLTSTGE 411
            MHQNVG+NTPTA AAVA E SPEAHPRSRPRLETPPKSGAG NSS AGVEGGQSGIC+LGSDSPRPGGLNGD AAWLTSTGE
Sbjct:    1 MHQNVGNNTPTAPAAVAGEESPEAHPRSRPRLETPPKSGAGGNSSTAGVEGGQSGICKLGSDSPRPGGLNGDSAAWLTSTGE 82          
BLAST of mRNA_Ecto-sp8_S_contig10991.1357.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.380e-7
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1
Query:   61 TDNLKRVRDLLHNAPADRAWRRRGFLVPCRAFPD 162
            T++++RVR+LL NAPADRAWRRRG+L+ CRA PD
Sbjct:  298 TEDVERVRELLANAPADRAWRRRGYLIMCRAQPD 331          
BLAST of mRNA_Ecto-sp8_S_contig10991.1357.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.570e-6
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1
Query:   55 VDTDNLKRVRDLLHNAPADRAWRRRGFLVPCRAF 156
            ++  +L+RVRDLL NAPADRAWRRRG LV CRAF
Sbjct:  309 LNKQDLERVRDLLENAPADRAWRRRGLLVLCRAF 342          
BLAST of mRNA_Ecto-sp8_S_contig10991.1357.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.110e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1
Query:   55 VDTDNLKRVRDLLHNAPADRAWRRRGFLVPCRAF 156
            ++  +++RVRDLL NAP DRAWRRRGFLV CRAF
Sbjct:  260 LNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAF 293          
BLAST of mRNA_Ecto-sp8_S_contig10991.1357.1 vs. uniprot
Match: A0A6H5JFR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR1_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.000e-6
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   73 KRVRDLLHNAPADRAWRRRGFLVPCRAFPDGMHQNVGSNTPTAHAA 210
            +RV  LL NAPADRAWRRRGFL+ CRA+P+ +   + S++    AA
Sbjct:  211 ERVYKLLRNAPADRAWRRRGFLLLCRAYPERVPPRLDSSSTLVDAA 256          
BLAST of mRNA_Ecto-sp8_S_contig10991.1357.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.300e-5
Identity = 27/59 (45.76%), Postives = 32/59 (54.24%), Query Frame = 1
Query:   70 LKRVRDLLHNAPADRAWRRRGFLVPCRAFPDGMHQNVGSNTPTAHAAVAAEGSPEAHPR 246
            L+RV +LL  AP DRAWRRRGFLVPC + PD +   V        A    +  P  H R
Sbjct:  214 LERVSELLARAPQDRAWRRRGFLVPCLSHPDRVQLAVEIPEAATEAIEQTQERPRRHAR 272          
BLAST of mRNA_Ecto-sp8_S_contig10991.1357.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.300e-5
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1
Query:   28 LGVLNAHNSVDTDNLKRVRDLLHNAPADRAWRRRGFLVPCRAFPD 162
            +G    H + D ++ +R R LL  APADRAWRRRG LV CRA PD
Sbjct:  317 IGTRRCHRT-DPEDDERARSLLARAPADRAWRRRGLLVLCRAHPD 360          
BLAST of mRNA_Ecto-sp8_S_contig10991.1357.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 9.310e-5
Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 1
Query:   64 DNLKRVRDLLHNAPADRAWRRRGFLVPCRAFPDGMHQNVGSNTPTAHAAVAAEGSPEAHPRSRPRLE 264
            +++ RVR LL  APADRAWRRRGFL+  RA   G     G  T  A AA  A+ +  +   SR  ++
Sbjct:  678 EDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQAPAAGVAKRTRSSEEPSRAEID 744          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10991.1357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G2K5_ECTSI2.450e-4387.95EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5JQY3_9PHAE2.130e-4290.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXK5_9PHAE4.380e-770.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNU3_9PHAE1.570e-673.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6X8_ECTSI2.110e-670.59Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JFR1_9PHAE4.000e-654.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFY7_9PHAE2.300e-545.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1U1_ECTSI3.300e-555.56Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JHY9_9PHAE9.310e-543.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10991contigEcto-sp8_S_contig10991:109..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score156.0
Seed ortholog evalue1.3e-35
Seed eggNOG ortholog2880.D7G2K5
Model size413
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionEsV-1-21
Ec32 orthologEc-11_002570.1
Cds size411
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143185.7867565-CDS-Ecto-sp8_S_contig10991:108..5191681143185.7867565-CDS-Ecto-sp8_S_contig10991:108..519Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10991 109..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10991.1357.1prot_Ecto-sp8_S_contig10991.1357.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10991 109..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10991.1357.1

>prot_Ecto-sp8_S_contig10991.1357.1 ID=prot_Ecto-sp8_S_contig10991.1357.1|Name=mRNA_Ecto-sp8_S_contig10991.1357.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=137bp
EITCYDLTPLGVLNAHNSVDTDNLKRVRDLLHNAPADRAWRRRGFLVPCR
AFPDGMHQNVGSNTPTAHAAVAAEGSPEAHPRSRPRLETPPKSGAGCNSS
AAGVEGGQSGICELGSDSPRPGGLNGDLAAWLTSTGE
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mRNA from alignment at Ecto-sp8_S_contig10991:109..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10991.1357.1 ID=mRNA_Ecto-sp8_S_contig10991.1357.1|Name=mRNA_Ecto-sp8_S_contig10991.1357.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=411bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10991:109..519+ (Ectocarpus species8 EcLAC_412)
GAAATTACATGCTACGATCTCACACCCCTTGGTGTTCTTAATGCGCACAA TTCTGTGGACACGGACAACCTCAAGCGCGTGCGCGACCTCTTGCACAACG CTCCGGCGGACAGAGCGTGGCGCCGCCGGGGCTTTCTTGTGCCATGCCGG GCTTTCCCGGACGGGATGCACCAAAATGTCGGAAGCAACACTCCAACCGC GCACGCCGCCGTCGCCGCCGAGGGATCGCCTGAAGCTCACCCCAGAAGCC GCCCTAGGCTTGAGACACCGCCAAAAAGCGGTGCCGGTTGCAACAGCAGC GCGGCAGGGGTGGAAGGCGGCCAAAGCGGAATCTGTGAACTGGGTAGCGA CAGTCCGAGGCCTGGTGGCCTGAATGGTGACTTGGCAGCTTGGCTGACGA GCACGGGGGAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10991:109..519+

>mRNA_Ecto-sp8_S_contig10991.1357.1 ID=mRNA_Ecto-sp8_S_contig10991.1357.1|Name=mRNA_Ecto-sp8_S_contig10991.1357.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10991:109..519+ (Ectocarpus species8 EcLAC_412)
GAAATTACATGCTACGATCTCACACCCCTTGGTGTTCTTAATGCGCACAA
TTCTGTGGACACGGACAACCTCAAGCGCGTGCGCGACCTCTTGCACAACG
CTCCGGCGGACAGAGCGTGGCGCCGCCGGGGCTTTCTTGTGCCATGCCGG
GCTTTCCCGGACGGGATGCACCAAAATGTCGGAAGCAACACTCCAACCGC
GCACGCCGCCGTCGCCGCCGAGGGATCGCCTGAAGCTCACCCCAGAAGCC
GCCCTAGGCTTGAGACACCGCCAAAAAGCGGTGCCGGTTGCAACAGCAGC
GCGGCAGGGGTGGAAGGCGGCCAAAGCGGAATCTGTGAACTGGGTAGCGA
CAGTCCGAGGCCTGGTGGCCTGAATGGTGACTTGGCAGCTTGGCTGACGA
GCACGGGGGAA
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