mRNA_Ecto-sp8_S_contig1099.1356.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Match: D7G231_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G231_ECTSI) HSP 1 Score: 1113 bits (2878), Expect = 0.000e+0 Identity = 570/619 (92.08%), Postives = 587/619 (94.83%), Query Frame = 3
Query: 303 MPERCRWLLYCRVALVLLQLPSPSIALVRYCCCRSASLAREGAIGCTNVAAAEETDGRCESPRSSKSSLEEIELWLDEVGVDRRGGGCGPPAARLTSVSGKGIGLTAAVELERDSTVASIPRRICFSSDAADAPAGTLRAWAHDLFASIPSSAAAACSEKHLSFEGDVAVVTLQVFLESAAGARSTCAPWMAMLNRKGSLNLPALWPDSDLEGLKGTLVLQDVEACLARAKSERVAVAAAMVKGLRGDIGGG-----EAGGFPECAWLDPSNMEGRPTFAEWLHARCTVQSRAYRVGRRYLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVFLADRTYRPGEEVCTTYGDMDNAKRLFSFGFVTLKQHAAQPSQRHPAGNMIPLPTEAFCDVELTIAATDALRVLKEAVLRDCRAGDDVSSPSLSAMFPLTPFVSQLVEGPARLFVESVLPVLRLVALTPEELTGGEAFGDACDTRSVFGTIFESRMTDTSSDKGPVLAAGKGRQVLAHLGSRLSLQNEQQALRLLAEQCRTRLRSFNLTFGDVEALRAVADNSHESKTFAAGGPRSLLCATVRVGEAIAWYSLLKACAEKMEGCTGVREEQTWASWTLEHCETAVE 2144
MPERCRWLLYCRVALVLLQLPSP+ ALVRY CRSA LAREGAIGCTNVA AEETDGRCESPRSSKSSL+EIELWLDEVGVDRRGGGCGPPAARLTSVSGKGIGLTA+VELERDSTVASIPRRICFSSDAADAPAGTLRAWAHDLFASIPSSAAAACSEKHLSFEGDVAVVTLQVFLESAAG RSTCAPWMAMLNRKGSLNLPALWPDSDLEGLKGTLVLQDVEACLARAKSERVAVAAAMVKGLRG++GGG E GGFPEC WLD SNMEGRPTFAEWLHARCTVQSRAYRV RRYLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVF+ADRTYRPGEEVCTTYGDMDNAKRLFSFGFVTLKQHAAQPSQR PAGNM+PLPTEAFCDVELTIAATD LRV KEAVLR+ +AG+D+ SP+L AMFPLTPFVSQLVEGPARLFVESVLPV+RLVALTPEELTGG+AFGDACDTRSVFGT F+SRMTDTSSDK PVLAAG GRQVLAHLGSRLSLQNEQQALRLLAEQCRTRL S N TFGDVE LRAVAD+SHESKTFAA GPRSLLCATVRVGEAIAWY+LLKACAEKMEG TGVREEQTWASWTLE CETA E
Sbjct: 1 MPERCRWLLYCRVALVLLQLPSPATALVRYSWCRSALLAREGAIGCTNVATAEETDGRCESPRSSKSSLKEIELWLDEVGVDRRGGGCGPPAARLTSVSGKGIGLTASVELERDSTVASIPRRICFSSDAADAPAGTLRAWAHDLFASIPSSAAAACSEKHLSFEGDVAVVTLQVFLESAAGERSTCAPWMAMLNRKGSLNLPALWPDSDLEGLKGTLVLQDVEACLARAKSERVAVAAAMVKGLRGELGGGGRAGGEGGGFPECPWLDTSNMEGRPTFAEWLHARCTVQSRAYRVRRRYLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVFVADRTYRPGEEVCTTYGDMDNAKRLFSFGFVTLKQHAAQPSQRRPAGNMLPLPTEAFCDVELTIAATDELRVFKEAVLRERQAGEDLVSPNLGAMFPLTPFVSQLVEGPARLFVESVLPVMRLVALTPEELTGGDAFGDACDTRSVFGTSFDSRMTDTSSDKCPVLAAGTGRQVLAHLGSRLSLQNEQQALRLLAEQCRTRLGSLNPTFGDVETLRAVADDSHESKTFAACGPRSLLCATVRVGEAIAWYALLKACAEKMEGGTGVREEQTWASWTLERCETAAE 619
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Match: A0A6H5K108_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K108_9PHAE) HSP 1 Score: 1091 bits (2822), Expect = 0.000e+0 Identity = 559/619 (90.31%), Postives = 579/619 (93.54%), Query Frame = 3
Query: 303 MPERCRWLLYCRVALVLLQLPSPSIALVRYCCCRSASLAREGAIGCTNVAAAEETDGRCESPRSSKSSLEEIELWLDEVGVDRRGGGCGPPAARLTSVSGKGIGLTAAVELERDSTVASIPRRICFSSDAADAPAGTLRAWAHDLFASIPSSAAAACSEKHLSFEGDVAVVTLQVFLESAAGARSTCAPWMAMLNRKGSLNLPALWPDSDLEGLKGTLVLQDVEACLARAKSERVAVAAAMVKGLRGDIG-----GGEAGGFPECAWLDPSNMEGRPTFAEWLHARCTVQSRAYRVGRRYLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVFLADRTYRPGEEVCTTYGDMDNAKRLFSFGFVTLKQHAAQPSQRHPAGNMIPLPTEAFCDVELTIAATDALRVLKEAVLRDCRAGDDVSSPSLSAMFPLTPFVSQLVEGPARLFVESVLPVLRLVALTPEELTGGEAFGDACDTRSVFGTIFESRMTDTSSDKGPVLAAGKGRQVLAHLGSRLSLQNEQQALRLLAEQCRTRLRSFNLTFGDVEALRAVADNSHESKTFAAGGPRSLLCATVRVGEAIAWYSLLKACAEKMEGCTGVREEQTWASWTLEHCETAVE 2144
MPERCRWLLYC VALVL QLPSPS AL+RYCCC+SASLAREGAI CTNVAAAEET+GRCESPRSSKSSL+E+ELWLDE+GVDRRGGGCGPPAARLT VSGKGIGLTAAVELERDSTVASIPR+ICFSSDAADAPAGTLRAWAHDLFASIPSSAAAACSEKHLSFE DVAVVTLQVFLE AAGA STCAPWMAMLNRKG LNLPALWPDSDLEGLKGTLVLQDVEACLARAKSERVAVA+AMV GLRGD G GGEAGGFPEC WLDPSNMEGRPTFAEWLHARCTVQSRAYRVGRRYLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVF+ADRTYRPGEEVCTTYGDMDNAKRLFSFGFVTLKQHAAQP QR GNM+ LPTEAFCDVELTIAATDALRV+KE V R+ RAGDD+SSPSLSA+FPLTPFVSQLV+GPARLFVESVLPVLRLVALTP+ELTGGEAFGDA DTRS GTIFES +TDTSSD+ PVLAAGKGRQVLAHLGSRLSLQNEQQALRLLAEQCRTRL S NLT DVEAL AVAD+SHESK FAA GPRSLLCATVRVGEAIAWY+LLKAC EKMEGCTGVREEQTWASW LE CETAVE
Sbjct: 1 MPERCRWLLYCSVALVLSQLPSPSTALLRYCCCQSASLAREGAIDCTNVAAAEETNGRCESPRSSKSSLKEMELWLDEIGVDRRGGGCGPPAARLTWVSGKGIGLTAAVELERDSTVASIPRKICFSSDAADAPAGTLRAWAHDLFASIPSSAAAACSEKHLSFERDVAVVTLQVFLERAAGASSTCAPWMAMLNRKGHLNLPALWPDSDLEGLKGTLVLQDVEACLARAKSERVAVASAMVTGLRGDFGAGGREGGEAGGFPECTWLDPSNMEGRPTFAEWLHARCTVQSRAYRVGRRYLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVFVADRTYRPGEEVCTTYGDMDNAKRLFSFGFVTLKQHAAQPFQRRLTGNMLALPTEAFCDVELTIAATDALRVVKETVFRERRAGDDLSSPSLSAVFPLTPFVSQLVDGPARLFVESVLPVLRLVALTPDELTGGEAFGDAFDTRSALGTIFESMVTDTSSDRCPVLAAGKGRQVLAHLGSRLSLQNEQQALRLLAEQCRTRLGSLNLTTSDVEALSAVADDSHESKAFAACGPRSLLCATVRVGEAIAWYALLKACDEKMEGCTGVREEQTWASWMLERCETAVE 619
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Match: D7G230_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G230_ECTSI) HSP 1 Score: 142 bits (359), Expect = 8.550e-36 Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 3
Query: 3 VNLDDMHFDEADGGSFSHECRCGEAYVVTRDELNEGFEILDCPGCSLYIKVLGKLAEPAAATTAPATHR 209
VN+DDMHFDEADGGSFSHECRCGEAYVVTRDELNEGFE+LDCPGCSLYI+VLGKLAEPAAATTAPAT R
Sbjct: 86 VNVDDMHFDEADGGSFSHECRCGEAYVVTRDELNEGFEVLDCPGCSLYIRVLGKLAEPAAATTAPATDR 154
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Match: W7TVF3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVF3_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 6.830e-9 Identity = 40/107 (37.38%), Postives = 55/107 (51.40%), Query Frame = 3
Query: 1119 TFAEWLHARCTVQSRAYRVGRR------------------YLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVFLADRTY-RPGEEVCTTYGDMDNAKRLFSFGFV 1382
T+ W AR SR Y + R L+PL+D ANHDD + +AV PGDGVFT +EV +ADR Y G ++YG + +A + +SFGF+
Sbjct: 295 TWENWSWARAVAMSRPYVLKSRPSRSTEEAGRPDFFGDPVLQLLPLLDMANHDDAIHYAVQPGDGVFTSREEVQLVADRDYPEVGAPFLSSYGPLSSATKFYSFGFL 401
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Match: A0A4D9DE75_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DE75_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 9.330e-9 Identity = 40/107 (37.38%), Postives = 55/107 (51.40%), Query Frame = 3
Query: 1119 TFAEWLHARCTVQSRAYRVGRR------------------YLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVFLADRTY-RPGEEVCTTYGDMDNAKRLFSFGFV 1382
T+ W AR SR Y + R L+PL+D ANHDD + +AV PGDGVFT +EV +ADR Y G ++YG + +A + +SFGF+
Sbjct: 295 TWENWSWARAIAMSRPYVLESRPSRSTEAAGRSDFFGDPVLQLLPLLDMANHDDAIHYAVQPGDGVFTAREEVQLVADRDYPEVGAPFLSSYGPLSSATKFYSFGFL 401
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Match: A0A6S9FGC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FGC7_HETAK) HSP 1 Score: 69.7 bits (169), Expect = 1.240e-8 Identity = 83/303 (27.39%), Postives = 124/303 (40.92%), Query Frame = 3
Query: 513 EIELWLDEVGVDRRGGGCGPPAARLTSVSGKGIGLTAAVELERDSTVASIPRRICFSSDAADAPAGTLRAWAHDLFASIPSSAAAACSEKHL-SFEG---DVAVVTLQVFLESAAGARSTCAPWMAMLNRKGSLNLPALWPDSDLE--------GLKGTLVLQDVEACLARAKSERVAVAAAMVKGLRGDIGGGEAGGFPECAWLDPSNMEGRPTFAEWLHARCTVQSRAYRVGRRYLLIPLVDFANHDDDVAFAVCPGDGV-FTGSDEVVFLADRTYRPGEEVCTTYGDMDNAKRLFSFGFV 1382
++E WL + GV G +L G G GL ++R + +IP+ +C S SSA + K+L +FEG +V ++ L + E + G S P++A L + + P W + LE G+KG ++DV KS+ IG G FP + N+E +W A SR++ V L+PL+DFANH D VAF G G+ G V LA++ Y+PG E +YG A+ L GF+
Sbjct: 55 DLEAWLADNGVKDLSVTVGDSKGKL----GMGKGLIVTKAMKRGTAALNIPQSLCLSV----------------------SSALESQIGKYLKNFEGWTGEVGIIALHLLYEKSIGNDSKFGPFIAALPEQ--IEHPLFWNEETLELAQKSSTKGIKG--FVEDVAEDFEDFKSQV--------------IGRSPPGTFP----AEFFNLES----FKW--AVACAASRSFFVDGELRLVPLLDFANHGDGVAFVEPEGGGMGIFGGKAVKALANQAYQPGSEFLVSYGPKSPAEYLEEHGFL 303
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Match: A0A7S1XLD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLD1_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.910e-8 Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 3
Query: 1125 AEWLHARCTVQSRAYRVGRRYLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVFLADRTYRPGEEVCTTYGDMDNAKRLFSFGFVTLKQHAAQPS 1412
A ++HA + SRAY + + +LIPL+D ANH+DDV +AV DGVFT +D + + G +V ++YG ++ FGF +P+
Sbjct: 90 AAYVHASAYLLSRAYSIDGKLVLIPLIDMANHNDDVPYAVEKSDGVFTPADSLNLVLAAPRERGAQVFSSYGAHCSSDLFQCFGFTRRPARRLRPA 185
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Match: A0A485L5H2_9STRA (Aste57867_16026 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5H2_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.810e-6 Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 3
Query: 3 VNLDDMHFDEADGGSFSHECRCGEAYVVTRDELNEGFEILDCPGCSLYIKVL 158
V L+D FD A+ +++ CRCGE+YV+T DE+++ EI+ C GCSL I+VL
Sbjct: 92 VALEDFEFD-AEDEIYTYNCRCGESYVLTTDEVDDAVEIVPCDGCSLNIRVL 142
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Match: H3H5A6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5A6_PHYRM) HSP 1 Score: 58.2 bits (139), Expect = 3.130e-6 Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 3
Query: 27 DEADGGSFSHECRCGEAYVVTRDELNEGFEILDCPGCSLYIKVL 158
D+ D F+H+CRCG+ Y +T DEL +G +++ C GCSL+I+VL
Sbjct: 104 DDDDEVLFTHQCRCGDLYEITEDELQDGVDVVPCTGCSLHIRVL 147
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Match: A0A6J3CK37_AYTFU (DPH3 homolog n=11 Tax=Neognathae TaxID=8825 RepID=A0A6J3CK37_AYTFU) HSP 1 Score: 55.5 bits (132), Expect = 5.010e-6 Identity = 20/52 (38.46%), Postives = 37/52 (71.15%), Query Frame = 3
Query: 3 VNLDDMHFDEADGGSFSHECRCGEAYVVTRDELNEGFEILDCPGCSLYIKVL 158
V ++D +D A+ G++S+ C CG+ +++TR++L G E+ CP CSL ++V+
Sbjct: 9 VEIEDFEYD-AESGTYSYPCPCGDRFLITREDLENGEEVATCPSCSLILRVI 59 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1099.1356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1099.1356.1 >prot_Ecto-sp8_S_contig1099.1356.1 ID=prot_Ecto-sp8_S_contig1099.1356.1|Name=mRNA_Ecto-sp8_S_contig1099.1356.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=615bp MPERCRWLLYCRVALVLLQLPSPSIALVRYCCCRSASLAREGAIGCTNVAback to top mRNA from alignment at Ecto-sp8_S_contig1099:13786..17032- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig1099.1356.1 ID=mRNA_Ecto-sp8_S_contig1099.1356.1|Name=mRNA_Ecto-sp8_S_contig1099.1356.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3247bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1099:13786..17032- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1099:13786..17032- >mRNA_Ecto-sp8_S_contig1099.1356.1 ID=mRNA_Ecto-sp8_S_contig1099.1356.1|Name=mRNA_Ecto-sp8_S_contig1099.1356.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1845bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1099:13786..17032- (Ectocarpus species8 EcLAC_412)back to top |