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Homology
BLAST of mRNA_Ecto-sp8_S_contig10988.1351.1 vs. uniprot
Match: D8LLE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE9_ECTSI) HSP 1 Score: 753 bits (1945), Expect = 3.700e-268 Identity = 422/498 (84.74%), Postives = 436/498 (87.55%), Query Frame = 1
Query: 487 MLASKQACESKPVGYEIDLADGNGYWDLLGGNRHRGHGGE-GVLAGELAESAVASVVLLRWVVERIVANGGEGGSEDGDGVVPVTTAPREGLTTEDDNDPAKAPVAEDRTPGMQGEAVSATATGQVRLAKSTRKPRDSDRYSFSDSLEKKWASHHGEGDCLGPRKAIGNESFAATCPSLSESSCNRERLRDKKPLPRELPLSGGXXXXXXXXXXXXXXXXXXXXXQPPEGDRGRPADGIVATSSSPGDETKKDARRREGWRDGRTPQVAGKSTASGDEPVEDVTTVPKRWLAPAAHEVALHALVCLLRAAEVDLCGHSGTNRLQTELDMDPVGGGRAVVMEEGVLLLVLKACAKFQDHGDVVKICCMLMRVGVMCALHGEGFERPVGGPIAPDMALLVDNDVEGVVTRAAKAHVGNLSVDTEASALLHSLGMDSIRIDASEATCSALPPPAPPTXXPA-KSDLGPAAVVVTVDAVTKASTTALDLGVVPNPTAGRASS 1974
MLASK A ESKP GYEIDLADGNGYWDLLGGNR RGHGG+ GVLAGELAESAVASVVLLRW +E +VAN GEGG+EDGDGVVPVTTAPR+GLT DD DPAKAPVAEDRTPGMQGEAVSATA GQVRLAKSTRKPRDSDR+SFS SLE K ASH GEGDC GPR IGN+SFAATCPSLSESSCNRERLRDKKPLPR LPLSGG XXXXXXXXXXXXX QPPEGDRGRPADGIVATSSSPGDE KKDARRREGWRD R + TVPKRWLAPAAHEVALH LVCLLRAAEVDLCGH+GT+RLQTELD+D VGGGRAVVMEEGVLLL+LKACAKFQDHGDVVKICCMLMRVGVMCALHGEGFERPVGGPIAPDM+LL+DNDVEGVVTRAAKAHV NLSV EASALLHSLGMDSIRIDAS ATCSALPP APPT PA KS LGPAAVVVTVDAVTK TTALDLGVVPNPTAGRASS
Sbjct: 1 MLASKPAFESKPAGYEIDLADGNGYWDLLGGNRGRGHGGDDGVLAGELAESAVASVVLLRWAMECVVANDGEGGAEDGDGVVPVTTAPRDGLTA-DDGDPAKAPVAEDRTPGMQGEAVSATAKGQVRLAKSTRKPRDSDRFSFSGSLETKLASHQGEGDCRGPRNVIGNKSFAATCPSLSESSCNRERLRDKKPLPRGLPLSGGGRXXXXXXXXXXXXXWKGEEQQPPEGDRGRPADGIVATSSSPGDEPKKDARRREGWRDARXXXXXXXXXXXXXXXXXXMRTVPKRWLAPAAHEVALHTLVCLLRAAEVDLCGHNGTHRLQTELDVDTVGGGRAVVMEEGVLLLILKACAKFQDHGDVVKICCMLMRVGVMCALHGEGFERPVGGPIAPDMSLLIDNDVEGVVTRAAKAHVDNLSVAAEASALLHSLGMDSIRIDASGATCSALPP-APPTPPPAGKSALGPAAVVVTVDAVTK--TTALDLGVVPNPTAGRASS 494
BLAST of mRNA_Ecto-sp8_S_contig10988.1351.1 vs. uniprot
Match: A0A6H5KV03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV03_9PHAE) HSP 1 Score: 705 bits (1819), Expect = 4.640e-248 Identity = 416/553 (75.23%), Postives = 431/553 (77.94%), Query Frame = 1
Query: 487 MLASKQACESKPVGYEIDLADGNGYWDLLGGNRHRGHG-GEGVLAGELAESAVASVVLLRWVVERIVANGGEGGSEDGDGVVPVTTAPREGLTTEDDNDPAKAPVAEDRTPGMQGEAVSATATGQVRLAKSTRKPRDSDRYSFSDSLEKKWASHHGEGDCLGPRKAIGNESFAATCPSLSESSCNRERLRDKKPLPRELPLSGGXXXXXXXXXXXXXXXXXXXXXQPPEGDRGRPADGIVATSSSPGDETKKDARRREGWRDGRTPQVAGKSTASGDEPVEDVTTVPKR--------------------------------------------------------------------------WLAPAAHEVALHALVCLLRAAEVDLCGHSGTNRLQTELDMDPVGGGRAVVMEEGVLLLVLKACAKFQDHGDVVKICCMLMRVGVMCALHGEGFERPVGGPIAPDMALLVDNDVEGVVTRAAKAHVGNLSVDTEASALLHSLGMDSIRIDASEATCSALPPPAPPTXXPA-KSDLGPAAVVVTVDAVTKAS 1917
ML SKQACESK VGYE DLADGNGYWDLLG N RGHG +GVLAGELAESAVASVVLLRW +E IVAN GEGG+EDGDGVVP TTAPR GLTT DD++PAKAPVAED TP MQG+AVSATATGQVRLA S RKPR SDR+SFS SLE+K A+HHGEGDC GPRKAIGN+SFAA+CPSLSESSCNRERLRDKKP PRELPLSGG XXXXXXXXXXXXXXXXXXXX PEGDRGRPA GIV TS SPGDE KKD R REGWRDGRTP+VAGKSTASGDEPVED+ T PKR WLAPAAHEVALHALVCLLRAAEVDLCGHS TNRLQTELDMD VGGGRAVVMEEGVLLLVLKACA+FQDHGDVVKICCMLMRVGVMCALHG GFERPVGGPIAP MALLVDN VEGVVTRAAKAHV NLSV EASALLHSLGM+SIRIDAS ATCSALPP APPT PA KSDL PAAVVVTVDAVTKAS
Sbjct: 1 MLVSKQACESKSVGYEKDLADGNGYWDLLGENCCRGHGLDDGVLAGELAESAVASVVLLRWAMECIVANDGEGGAEDGDGVVPGTTAPRNGLTTADDDEPAKAPVAEDGTPSMQGKAVSATATGQVRLAHSARKPRGSDRFSFSGSLERKCANHHGEGDCRGPRKAIGNKSFAASCPSLSESSCNRERLRDKKPFPRELPLSGGRXXXXXXXXXXXXXXXXXXXXXXPEGDRGRPAGGIVVTSPSPGDEAKKDERHREGWRDGRTPRVAGKSTASGDEPVEDMRTFPKRYAAAPKMYCFWLVGAPSLLSAPWNDLHNPGSPQRRSTSRNVIFEERRMGLFKSVSSGLNPSCLPASLLSSADRTWLAPAAHEVALHALVCLLRAAEVDLCGHSSTNRLQTELDMDTVGGGRAVVMEEGVLLLVLKACARFQDHGDVVKICCMLMRVGVMCALHGAGFERPVGGPIAPGMALLVDNGVEGVVTRAAKAHVENLSVTMEASALLHSLGMNSIRIDASGATCSALPP-APPTPQPAGKSDLEPAAVVVTVDAVTKAS 552
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 0 |
| Model size | 1980 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 1980 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143185.3515036-CDS-Ecto-sp8_S_contig10988:379..1728 | 1681143185.3515036-CDS-Ecto-sp8_S_contig10988:379..1728 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10988 380..1728 + |
| 1681143185.36185-CDS-Ecto-sp8_S_contig10988:2152..2435 | 1681143185.36185-CDS-Ecto-sp8_S_contig10988:2152..2435 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10988 2153..2435 + |
| 1681143185.369019-CDS-Ecto-sp8_S_contig10988:3151..3436 | 1681143185.369019-CDS-Ecto-sp8_S_contig10988:3151..3436 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10988 3152..3436 + |
| 1681143185.3761091-CDS-Ecto-sp8_S_contig10988:3771..3834 | 1681143185.3761091-CDS-Ecto-sp8_S_contig10988:3771..3834 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10988 3772..3834 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10988.1351.1 >prot_Ecto-sp8_S_contig10988.1351.1 ID=prot_Ecto-sp8_S_contig10988.1351.1|Name=mRNA_Ecto-sp8_S_contig10988.1351.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=660bp
YHALATIRLCYPGGFFCESLVALRLQHGREPNPSNSGNKALPSPTRTAAA TAAAAATNTSAPCDDVQTVPDRTISRSYGGRGGGGSDGRGSIRAEGGGEA TRSKNASSTLLFRSPPPLRRYSLGVNACTRASQLRPLPAAARENACRRPG KVSFAKRSHAGPMLASKQACESKPVGYEIDLADGNGYWDLLGGNRHRGHG GEGVLAGELAESAVASVVLLRWVVERIVANGGEGGSEDGDGVVPVTTAPR EGLTTEDDNDPAKAPVAEDRTPGMQGEAVSATATGQVRLAKSTRKPRDSD RYSFSDSLEKKWASHHGEGDCLGPRKAIGNESFAATCPSLSESSCNRERL RDKKPLPRELPLSGGGRGGGGGGRGGGGGGWKGEEQQPPEGDRGRPADGI VATSSSPGDETKKDARRREGWRDGRTPQVAGKSTASGDEPVEDVTTVPKR WLAPAAHEVALHALVCLLRAAEVDLCGHSGTNRLQTELDMDPVGGGRAVV MEEGVLLLVLKACAKFQDHGDVVKICCMLMRVGVMCALHGEGFERPVGGP IAPDMALLVDNDVEGVVTRAAKAHVGNLSVDTEASALLHSLGMDSIRIDA SEATCSALPPPAPPTPPPAKSDLGPAAVVVTVDAVTKASTTALDLGVVPN PTAGRASSDV back to topmRNA from alignment at Ecto-sp8_S_contig10988:380..3834+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig10988.1351.1 ID=mRNA_Ecto-sp8_S_contig10988.1351.1|Name=mRNA_Ecto-sp8_S_contig10988.1351.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3455bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10988:380..3834+ (Ectocarpus species8 EcLAC_412) TATCATGCCTTGGCGACCATCCGGCTCTGCTACCCAGGTGGTTTCTTCTG
CGAATCGCTCGTCGCTCTCCGACTCCAGCACGGACGCGAGCCGAATCCCA
GCAACAGCGGGAACAAGGCTCTACCGTCTCCAACAAGGACTGCTGCTGCT
ACTGCCGCTGCTGCTGCTACTAACACTAGCGCACCGTGTGATGATGTTCA
AACTGTACCAGACCGAACAATATCAAGAAGCTACGGTGGCAGAGGCGGTG
GCGGTAGTGATGGCCGTGGTTCAATAAGGGCCGAGGGGGGAGGGGAAGCC
ACGCGTTCGAAGAACGCGTCGAGCACGCTGCTCTTCAGGAGTCCCCCGCC
CCTACGCCGGTACAGTCTAGGCGTTAACGCGTGCACTCGGGCGTCACAGC
TTCGGCCCTTGCCCGCTGCAGCGAGAGAGAACGCATGTCGACGGCCTGGG
AAGGTGTCCTTCGCGAAGAGATCTCACGCAGGACCGATGTTGGCCTCGAA
GCAAGCTTGTGAGAGCAAGCCGGTCGGGTACGAGATAGACCTAGCGGACG
GGAACGGCTACTGGGACCTTTTGGGTGGAAACCGCCACCGCGGCCACGGC
GGTGAAGGCGTTCTAGCAGGGGAGTTGGCTGAGAGTGCGGTCGCCTCGGT
CGTGCTGCTGAGGTGGGTCGTGGAGCGTATTGTGGCGAACGGCGGGGAGG
GCGGCTCCGAGGACGGCGATGGCGTCGTGCCAGTCACAACCGCTCCCCGA
GAAGGGTTAACTACGGAGGACGACAACGACCCGGCAAAGGCGCCGGTGGC
AGAGGATAGGACCCCCGGCATGCAGGGCGAGGCGGTGAGTGCGACGGCCA
CGGGCCAGGTCCGCCTAGCGAAGTCGACACGAAAGCCCAGGGACAGCGAC
CGGTATTCGTTTTCGGATTCGCTCGAAAAAAAGTGGGCCAGTCACCACGG
CGAGGGCGACTGCCTTGGCCCGAGAAAGGCCATCGGCAACGAGTCGTTTG
CTGCAACGTGTCCCTCACTATCAGAGTCTTCATGCAACCGGGAGAGGCTC
AGAGACAAGAAGCCTCTTCCCCGTGAGCTGCCCTTGTCTGGAGGGGGGAG
GGGAGGAGGCGGAGGGGGAAGGGGAGGGGGAGGAGGAGGGTGGAAGGGAG
AAGAGCAGCAACCGCCAGAGGGCGACCGCGGTCGCCCGGCCGACGGGATC
GTCGCGACTTCGTCATCTCCTGGAGATGAGACGAAGAAGGACGCAAGGCG
CCGAGAGGGCTGGCGCGACGGAAGAACCCCTCAGGTTGCGGGCAAAAGCA
CCGCATCAGGAGATGAACCGGTGGAGGACGTGACAACGGTCCCGAAAAGG
TACGCAGCGGCACCAAAGATGTGCCGTTTTTGGCTAGTCGGGGTGCCTTC
GTTATTTATGCGCGCAATGGAATGATCTACACAACCCAGGATCCACACAG
AGGAGGAGCACATCGAGGAAGGTTATCTTCATAAGAAAGGCACATGGGTC
TATTCAAGAGCGTTTCATCCGGGCTCAACCCGCCTTGCCAGCCCGCCAGC
CTGCTCAGTAGCGCAGATCGTACGCATGTATTGCATGAAGAAGAGCACAC
ATTTTGAGCATCGCTCTCAGGATGAGAACATCAAACGCTCTGCCGGCAAC
GCTGTACGTTCTGGAATAACACATGAACATCCTTCTTTGTATGAAAAAGA
GCACACGTTTTTGAGCTTCGCTCTCAGGACATCAACTGCTATGTCTGCAA
CATGAACATCTATGTTTGTTCAGGTGGCTAGCACCGGCGGCTCACGAGGT
CGCCTTGCATGCCCTGGTGTGCTTGCTGAGGGCCGCGGAGGTCGACCTCT
GTGGTCACAGCGGCACGAACAGACTTCAAACCGAGTTGGATATGGACCCT
GTGGGTGGCGGAAGGGCAGTAGTGATGGAGGAAGGCGTGCTTCTGCTAGT
TCTCAAGGCATGCGCGAAGTTCCAAGATCATGGCGACGTGGTCAAGATTT
GCTGTATGCTGATGCGCGTCGGTGTAATGTGTGCATTGCACGGCGAAGGG
TTTGAGGTGAGAACGGTGCGGTATTCGTCTGGTCTAGGGTTCTCCACTCC
ATACCAAAAAAAGACAAACGTACTTTACCCCCCCCAGTATATCACCGCAC
GGCCAAACCGATGTTGTGACTAGTACACAGTGATGGACTGCCAACCCTCA
AATGATCAAGTCAAGCCGAGCACGCTCCCGTCTCCATCCCTTTGGATGAC
CGGGTTTCATGTGTTCAAACGAGCTGGTTCGTCAGGCAGGAGGAGCAAAA
GGGATTCAACGGAAGCCCCGCCCCAGACCCCCTTTTGCTGCTTATTGTAC
GTCTCGACGGTGTGGAAACTCCAGCACAGATACTCCTACACTTCGCGTGT
CAACGGAAGCCCACAGAGCAATGAAATCTCCGGCAATCCGTGGCCGCGGT
CCCTTAACCCTCCCATGGGCAGAAAGGTGTACAGTGGGGGGGCCCGCCGG
TATTTTCCTGCCGCATCGACCGGCGCTATTCAGAGGGGCCCGTGTTATTC
AACGTACAAAATGACCCGGTTATTCAGTCGGTGCCCAGCAATTTTTACCG
GCGTAATGAAGGGCAACCGGCGTTGTTCAACCGGCGTTGTTGAGGGCCCA
CTACTGAACCATCACTCACTCACGTCGCCCTTTTCGTCGGTCGATGCCCC
CAGACGCTACGCACACCGGCGACCATCACCAACCCGTCGTCCCATCCACC
CGAACGAACCCTACCCTCACAGCGGCCGGTCGGCGGTCCCATTGCGCCAG
ACATGGCTCTCCTGGTCGACAATGACGTGGAGGGCGTAGTGACGAGGGCA
GCAAAGGCGCACGTCGGCAACCTTTCTGTCGACACGGAAGCTTCGGCGCT
GCTCCATAGCCTCGGAATGGACTCCATCAGAATCGATGCGTCGGAGGCAA
CTTGCTCGGCGCTGCCGCCGCCGGCGCCTCCTACTCCGCCGCCGGCGAAG
AGCGACTTGGGGCCGGCGGCTGTGGTCGTGACCGTTGATGCAGTGACAAA
GGCGAGTGTTGGGGCGTGTCCTCGTTACGAGGGAAGATAGCTCTCCCCCC
GTTGTCAGCGTTGGAATCTCCTTCGACCCTACTGTTTTTTCTAGGTAGAC
AGGATCAGTCGACACTTTGATTGAGTGGCCTGATGAACAAAACCGTTCAT
AGGTGAGACCGTTCACAAGAACCTCCTACAGCACCTGTGGAAATGGAAGA
AGGGCGACGGCCGGATACCTCCCTGAATAACTCATGAAAAATATTGGCAG
GCCTGAACCAAGCGGTATATGCATGCATGCATGCATAAGATGATGCACGA
TGCTCTCCCGCCTTGCCACGTTTGATTGTCCCTTGCGTGCAGACGACTGC
GTTGGATCTGGGTGTGGTACCCAACCCGACTGCAGGTCGAGCATCATCGG
ACGTG back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig10988:380..3834+ >mRNA_Ecto-sp8_S_contig10988.1351.1 ID=mRNA_Ecto-sp8_S_contig10988.1351.1|Name=mRNA_Ecto-sp8_S_contig10988.1351.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1980bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10988:380..3834+ (Ectocarpus species8 EcLAC_412) TATCATGCCTTGGCGACCATCCGGCTCTGCTACCCAGGTGGTTTCTTCTG CGAATCGCTCGTCGCTCTCCGACTCCAGCACGGACGCGAGCCGAATCCCA GCAACAGCGGGAACAAGGCTCTACCGTCTCCAACAAGGACTGCTGCTGCT ACTGCCGCTGCTGCTGCTACTAACACTAGCGCACCGTGTGATGATGTTCA AACTGTACCAGACCGAACAATATCAAGAAGCTACGGTGGCAGAGGCGGTG GCGGTAGTGATGGCCGTGGTTCAATAAGGGCCGAGGGGGGAGGGGAAGCC ACGCGTTCGAAGAACGCGTCGAGCACGCTGCTCTTCAGGAGTCCCCCGCC CCTACGCCGGTACAGTCTAGGCGTTAACGCGTGCACTCGGGCGTCACAGC TTCGGCCCTTGCCCGCTGCAGCGAGAGAGAACGCATGTCGACGGCCTGGG AAGGTGTCCTTCGCGAAGAGATCTCACGCAGGACCGATGTTGGCCTCGAA GCAAGCTTGTGAGAGCAAGCCGGTCGGGTACGAGATAGACCTAGCGGACG GGAACGGCTACTGGGACCTTTTGGGTGGAAACCGCCACCGCGGCCACGGC GGTGAAGGCGTTCTAGCAGGGGAGTTGGCTGAGAGTGCGGTCGCCTCGGT CGTGCTGCTGAGGTGGGTCGTGGAGCGTATTGTGGCGAACGGCGGGGAGG GCGGCTCCGAGGACGGCGATGGCGTCGTGCCAGTCACAACCGCTCCCCGA GAAGGGTTAACTACGGAGGACGACAACGACCCGGCAAAGGCGCCGGTGGC AGAGGATAGGACCCCCGGCATGCAGGGCGAGGCGGTGAGTGCGACGGCCA CGGGCCAGGTCCGCCTAGCGAAGTCGACACGAAAGCCCAGGGACAGCGAC CGGTATTCGTTTTCGGATTCGCTCGAAAAAAAGTGGGCCAGTCACCACGG CGAGGGCGACTGCCTTGGCCCGAGAAAGGCCATCGGCAACGAGTCGTTTG CTGCAACGTGTCCCTCACTATCAGAGTCTTCATGCAACCGGGAGAGGCTC AGAGACAAGAAGCCTCTTCCCCGTGAGCTGCCCTTGTCTGGAGGGGGGAG GGGAGGAGGCGGAGGGGGAAGGGGAGGGGGAGGAGGAGGGTGGAAGGGAG AAGAGCAGCAACCGCCAGAGGGCGACCGCGGTCGCCCGGCCGACGGGATC GTCGCGACTTCGTCATCTCCTGGAGATGAGACGAAGAAGGACGCAAGGCG CCGAGAGGGCTGGCGCGACGGAAGAACCCCTCAGGTTGCGGGCAAAAGCA CCGCATCAGGAGATGAACCGGTGGAGGACGTGACAACGGTCCCGAAAAGG TGGCTAGCACCGGCGGCTCACGAGGTCGCCTTGCATGCCCTGGTGTGCTT GCTGAGGGCCGCGGAGGTCGACCTCTGTGGTCACAGCGGCACGAACAGAC TTCAAACCGAGTTGGATATGGACCCTGTGGGTGGCGGAAGGGCAGTAGTG ATGGAGGAAGGCGTGCTTCTGCTAGTTCTCAAGGCATGCGCGAAGTTCCA AGATCATGGCGACGTGGTCAAGATTTGCTGTATGCTGATGCGCGTCGGTG TAATGTGTGCATTGCACGGCGAAGGGTTTGAGCGGCCGGTCGGCGGTCCC ATTGCGCCAGACATGGCTCTCCTGGTCGACAATGACGTGGAGGGCGTAGT GACGAGGGCAGCAAAGGCGCACGTCGGCAACCTTTCTGTCGACACGGAAG CTTCGGCGCTGCTCCATAGCCTCGGAATGGACTCCATCAGAATCGATGCG TCGGAGGCAACTTGCTCGGCGCTGCCGCCGCCGGCGCCTCCTACTCCGCC GCCGGCGAAGAGCGACTTGGGGCCGGCGGCTGTGGTCGTGACCGTTGATG CAGTGACAAAGGCGAGTACGACTGCGTTGGATCTGGGTGTGGTACCCAAC CCGACTGCAGGTCGAGCATCATCGGACGTG back to top
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