mRNA_Ecto-sp8_S_contig10984.1349.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10984.1349.1
Unique NamemRNA_Ecto-sp8_S_contig10984.1349.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10984.1349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10984contigEcto-sp8_S_contig10984:3882..4649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_007510.1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143185.2523634-CDS-Ecto-sp8_S_contig10984:3881..39781681143185.2523634-CDS-Ecto-sp8_S_contig10984:3881..3978Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10984 3882..3978 +
1681143185.2664673-CDS-Ecto-sp8_S_contig10984:4578..46491681143185.2664673-CDS-Ecto-sp8_S_contig10984:4578..4649Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10984 4579..4649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10984.1349.1prot_Ecto-sp8_S_contig10984.1349.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10984 3882..4649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10984.1349.1

>prot_Ecto-sp8_S_contig10984.1349.1 ID=prot_Ecto-sp8_S_contig10984.1349.1|Name=mRNA_Ecto-sp8_S_contig10984.1349.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=56bp
KRHLPPPQQPPHRPPLGQVWLVPRHFPPQDNRATNKLPKDPVYVVLERSK
GYWKT*
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mRNA from alignment at Ecto-sp8_S_contig10984:3882..4649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10984.1349.1 ID=mRNA_Ecto-sp8_S_contig10984.1349.1|Name=mRNA_Ecto-sp8_S_contig10984.1349.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=768bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10984:3882..4649+ (Ectocarpus species8 EcLAC_412)
AAACGTCATCTGCCGCCACCGCAACAGCCCCCGCATAGACCGCCCCTAGG
TCAAGTGTGGCTCGTTCCAAGACACTTCCCCCCACAAGATAATCGAGGTA
TTTCCGGGTACTTTGGGCATTTCTGTGTTTGTTTTCATTCCTTTCCTTCC
AGGTGTCTGGCAAGCCAACACCCCTCGAACCCGCGCAGATTTACAGTACC
ACCATCATTGTCACGCCCGCCACGTCCCGCCCTCGTTGGGCAGTTCTCAG
TCGATGTTGGTCGTCCGCGCGCAGTTCGATCACGTACATTTGTTTTCTTT
TGTTGGAGTGCTCCTGTGATTGGACGTCTATTTTCTTCGCCTATTTTTTC
CTGGCGCAGACGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCATTCTCTTTCTCTCTCTCCCCCTC
TGTCTCCCTCTGTCTCTCCCTCTCTCCCGCTCTCTTTCTCCCTCTCTCCC
TTCCCCCCCCTCCGTCTAGTAGTGTTTCCCCCCCCTCTTTTTGGGCTTCG
TATTGATCCCGGCCGCCCCGTGCTTGGTGGAAACGTGGGTGGCAACAACT
ACAAAACTGAACACGAAAAACGATGGGTCTGATCTTCGCTCTAGGGAGGG
CATCGTTTCGTGTTTGACATTCTCGTAATCAACTTCCATCTCGACAGCCA
CGAACAAGCTGCCCAAAGATCCTGTCTACGTGGTGCTCGAGCGGTCAAAA
GGATATTGGAAGACCTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10984:3882..4649+

>mRNA_Ecto-sp8_S_contig10984.1349.1 ID=mRNA_Ecto-sp8_S_contig10984.1349.1|Name=mRNA_Ecto-sp8_S_contig10984.1349.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10984:3882..4649+ (Ectocarpus species8 EcLAC_412)
AAACGTCATCTGCCGCCACCGCAACAGCCCCCGCATAGACCGCCCCTAGG
TCAAGTGTGGCTCGTTCCAAGACACTTCCCCCCACAAGATAATCGAGCCA
CGAACAAGCTGCCCAAAGATCCTGTCTACGTGGTGCTCGAGCGGTCAAAA
GGATATTGGAAGACCTGA
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