mRNA_Ecto-sp8_S_contig1098.1345.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1098.1345.1
Unique NamemRNA_Ecto-sp8_S_contig1098.1345.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1098.1345.1 vs. uniprot
Match: D8LNP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP2_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 1.070e-143
Identity = 228/243 (93.83%), Postives = 233/243 (95.88%), Query Frame = 1 
Query:   70 SNDESPLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFARPQSRGGPAGNGSKFSPLLDAKEGSTSPRYRDSALCAADSNRRGGELAGERGGGGLGREPRRLSRGAAEAKSEVGCTRLPGTKSTSPPRDRGEGSEGRPRLSSESLPGASPSSSNGAQRRQRSSQNVHASHSTKRSNGDVSPAGGERNGNDRHEGYGEEKDFGSVPNSPSTARGEESSKSPRTRRMRPQRDSAM 798
            S DESPLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFARPQSRGGPAGNGSKFSPLLDAKEGSTSPRYRD ALCAADSN+RGGELA ERGGGGLGRE R LSRGAAEAKSEVGCTRLPGTKSTSPPRDRGEGSEGRPRLSSESLPGASPSSSNG  RRQRSSQNV A+HSTKRS+GDVSPAGGERNGN R+EGYGEEKDFGSVPNSPS ARGEESSKSPRTRRMRPQRDSA+
Sbjct:  129 SEDESPLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFARPQSRGGPAGNGSKFSPLLDAKEGSTSPRYRDPALCAADSNKRGGELAAERGGGGLGRESRSLSRGAAEAKSEVGCTRLPGTKSTSPPRDRGEGSEGRPRLSSESLPGASPSSSNGTWRRQRSSQNVDAAHSTKRSSGDVSPAGGERNGNHRYEGYGEEKDFGSVPNSPSMARGEESSKSPRTRRMRPQRDSAV 371
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BLAST of mRNA_Ecto-sp8_S_contig1098.1345.1 vs. uniprot
Match: A0A6H5LP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LP62_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 1.630e-77
Identity = 147/223 (65.92%), Postives = 151/223 (67.71%), Query Frame = 1 
Query:   70 SNDESPLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFARPQSRGGPAGNGSKFSPLLDAKEGSTSPRYRDSALCAADSNRRGGELAGERGGGGLGREPRRLSRGAAEAKSEVGCTRLPGTKSTSPPRDRGEGSEGRPRLSSESLPGASPSSSNGAQRRQRSSQNVHASHSTKRSNGDVSPAGGERNGNDRHEGYGEEKDFGSVPNSPSTARG 738
            S DESPLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFA PQ RGGPAGNGSKFSPLLDAKEGSTSPRYRD ALCAADSN+R GELA E GGGGL REP+RLSR AAEAKSEVGCTRLPGT                                                           PAGGERN N R+EG+GE KDFGSVPNSPST RG
Sbjct:  141 SEDESPLPGLSLSPRSGAHSARRVRSLPPTPKRASCTNLDPVSDSVEFAWPQGRGGPAGNGSKFSPLLDAKEGSTSPRYRDPALCAADSNKRSGELAAECGGGGLEREPQRLSR-AAEAKSEVGCTRLPGTN----------------------------------------------------------PAGGERNDNHRYEGHGERKDFGSVPNSPSTVRG 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1098.1345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNP2_ECTSI1.070e-14393.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LP62_9PHAE1.630e-7765.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1098contigEcto-sp8_S_contig1098:1..3308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size801
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006380.1
Cds size801
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143184.9244509-CDS-Ecto-sp8_S_contig1098:0..751681143184.9244509-CDS-Ecto-sp8_S_contig1098:0..75Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1098 1..75 +
1681143184.9336138-CDS-Ecto-sp8_S_contig1098:347..7361681143184.9336138-CDS-Ecto-sp8_S_contig1098:347..736Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1098 348..736 +
1681143184.9505885-CDS-Ecto-sp8_S_contig1098:1489..16501681143184.9505885-CDS-Ecto-sp8_S_contig1098:1489..1650Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1098 1490..1650 +
1681143184.9581316-CDS-Ecto-sp8_S_contig1098:2114..22251681143184.9581316-CDS-Ecto-sp8_S_contig1098:2114..2225Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1098 2115..2225 +
1681143184.965285-CDS-Ecto-sp8_S_contig1098:3243..33081681143184.965285-CDS-Ecto-sp8_S_contig1098:3243..3308Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1098 3244..3308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1098.1345.1prot_Ecto-sp8_S_contig1098.1345.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1098 1..3308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1098.1345.1

>prot_Ecto-sp8_S_contig1098.1345.1 ID=prot_Ecto-sp8_S_contig1098.1345.1|Name=mRNA_Ecto-sp8_S_contig1098.1345.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=267bp
LPASGTSSSASPRLPPMKSAPSPSNDESPLPGLSLSPRSGAHSARRVRSL
PPTPKRASCTNLDPVSDSVEFARPQSRGGPAGNGSKFSPLLDAKEGSTSP
RYRDSALCAADSNRRGGELAGERGGGGLGREPRRLSRGAAEAKSEVGCTR
LPGTKSTSPPRDRGEGSEGRPRLSSESLPGASPSSSNGAQRRQRSSQNVH
ASHSTKRSNGDVSPAGGERNGNDRHEGYGEEKDFGSVPNSPSTARGEESS
KSPRTRRMRPQRDSAM*
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mRNA from alignment at Ecto-sp8_S_contig1098:1..3308+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1098.1345.1 ID=mRNA_Ecto-sp8_S_contig1098.1345.1|Name=mRNA_Ecto-sp8_S_contig1098.1345.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3308bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1098:1..3308+ (Ectocarpus species8 EcLAC_412)
CTACCAGCCTCAGGCACAAGCAGCTCTGCGTCGCCAAGACTCCCGCCCAT
GAAGTCAGCGCCATCCCCTTCAAACGTGAGAATCGTTGGCGGCCTCACGC
AGAGACGCGCAGTTCATAGTCTTAACCCGTCAAGCAGACAGAGGAGAATC
ACAAACACAAATGTTGAACTTACGTTCACGCCAGCTTTCATGAGATACCA
CCAGGGCGAAGATTGGGCAAAGTAGTGCGCGGGTGAGCAATGGTGTCTCT
CCGCACTCTACAATATCCTGCAGCTGACGCTTTGACAAAGTTTGGTTTCA
CCCGCGGTCGGTCTCCTGCTGCCGCTTCGTTCGGTGTTTTTTCCCAGGAC
GAATCTCCCCTCCCCGGTTTGTCGCTCTCTCCGAGAAGTGGCGCGCACTC
CGCCCGTCGGGTTCGAAGCCTTCCCCCGACTCCCAAGAGAGCTTCGTGCA
CCAACCTTGACCCTGTTAGCGATAGCGTCGAGTTCGCTCGGCCTCAGAGT
CGCGGCGGCCCGGCCGGCAACGGCAGCAAATTTTCTCCCCTCCTCGATGC
GAAAGAGGGTTCCACGTCGCCGCGGTATAGAGATTCCGCCCTATGCGCAG
CGGATAGCAACAGGCGCGGCGGGGAGCTTGCAGGTGAACGTGGCGGTGGC
GGGTTAGGACGCGAACCGCGACGCCTTTCGAGGGGGGCGGCGGAAGCGAA
AAGCGAGGTCGGGTGCACTCGTCTTCCGGGGACAAAGTGAGTCTATCAGC
TTGGCATTTCGATGCGAGAGAAGTGTGGTGTGTTCGACTTTTTTGTCCGT
GAGAAGAAGAACACGCAGCATCGTTCAGTTTGAGCTTCAGGACGGCGATT
GGTGGCGTTTCTTCCACGTGCTGTGCATCGTTCGTCTGCAAAGGGCCCTG
GTGTTGCCTTCATGTCCCATGCGTGGTTCTAAATGTGAGCCCAGCAGAGC
CCTTTACAGACTGCGAGATCGGAGAAACAACATGGTTGGTTGCCAGGGAA
ATCAAGGGAGCCCTTGACTTGCTTGCACACCGCCTTCTCTCTGCTTGTTC
TCTCTTACAGACGACGAATTGCGATATGTTTTGCAGACATCAAAGAGAAT
GCTCAAGCGGCCGATCGATAACCGATGCGGCGTACATAATGGAAAAGTCC
AAACAGTACAACCGAAAGGGCGAGGATGCAGTCGCTCCGACTAAATAATC
TCAATCCGGTGCAGTGACAAGTTGACCCTTCAAGAATCACGGCATACAGC
GATTGAGAGGTTTCAAGACGCAGATGTCGACATCTGGCAAGAGTGTGATT
CCATTTCTGTACTACAACCTCCAGTGTTGGCTGTGCCAACGTGCCCCCAC
CAACGTCTCTGGAGGTGGATTCCACAAGCTTCCGGGTAATGCAGCTGGAT
TAATACTATACCATACCCAAGCCTTTACAACAATAACAACGTGATCATTC
CGATCATGTTCCGTTCTTTTGTCTCAACCATGTTTTCAGGTCCACCTCAC
CACCGCGAGACAGAGGAGAGGGTAGCGAGGGTAGACCCCGTTTGTCGAGT
GAGAGTCTTCCGGGCGCTTCCCCTTCATCTTCCAACGGCGCTCAGCGCAG
GCAGCGGAGCTCGCAGAACGTGCATGCGTCGCATTCCACGAAACGATCGA
GTGAGAGAAACAGCCACGGTGCGGTAACGACAACGGTAGTGTACGGCGCT
GGAGGCGTGTAGACGACCGTGAGAGTAATATACCGTCTGACTGCCCATCT
ACTTTTCTAGAGGGTATCTCATCGATTCCCGGACCTGACGGGCGTTCTCC
AATCCTGTAACCTCGACCACATTTTGCTTTGAGTGTGCACATGGTTCACC
ATGGAATCTCCAGCAAACTTCTAGAGAAATAGTTCCGCTGGTATCCAAGG
CCTGGAATTCACCTCCAGCTGCCTGCCGCGTTCGAAGCCTTTCCGCGAAC
AAGAAGACTCGAAGCCTACACGGAAACCGTAGCAAGCAGGGCCTTGAATG
ACGGAATTCTTTGTACTGCTCCCTCACCAAGGACACGACCGTTGCACATA
GGGATGTCACCCTTTCCCATCCAGCCTCCAACACGCGTGTTTCCCTGATT
TTGAAATGTTGAAGATGGGGACGTTAGTCCCGCCGGGGGAGAACGCAACG
GCAACGACCGCCACGAGGGCTACGGCGAGGAAAAGGACTTCGGAAGCGTT
CCCAACAGCCCGTCCACGGCCAGAGGTGTGAAAAGCTGTTCCTTAGATCT
GCGAGTTGCGACAAGTTTCAGCTTGCTCTTTTTTGGCACCAACGTGTATT
GCTGCGCATGATGCCTGCGGCAGGCTCGTGGGTTCCTCTCGTGTTTCCAA
GCTAACGAATATACGGGCTGAACTGCCTCTAGAAAAGCGATACGTCGATG
AAATCCACGCCTAGTAAGCAGTCTGGTATTCTGTCGCAGTAGGTTACTGC
TCCGGTTGGACCCGGGTCTGAGGTCATCTTTAGGGTCTGAGGTACATTGT
GTTACCCTTCCCATTTCACCAAGCCTGTGAAAGAAGGACCCTTGCGACGA
TCAAGGGCACAGAGCGTCATTTCGGGCAGTTTGCGCACAACAACCTCAAC
AACCGTTTGACCGGTCACGGTAGACGGGGAGGAGCATAGGTCAAGGAAAC
AGGCTGATTCTAACTCGTCGCAGTCGAAGCAGTTTCGGATGATGCTGTGC
ATCTATGACCTATTTCTCCGTCTCTACTTCGTCTCCAGCACAAGTGAGGT
TATCTGTCCCGATAGGATCCATTCTTCCGCCATAGACATTCCGCGATCCT
GTGGGGTGTGGGCATAAACCTAATCCCCCGAAGAAATGTTGGAAAAATCT
AGCTTCCATAGTACTCCTGCCACCTGAGGAATCCTACTGCAAAACCTCAC
TGAGATGTAACGATTTGAGAGGCAGAGCTGTTCAGTTGAAGGGGGCTCAT
CCAAAAGTAGCTGCACTCTCGAATTGCGGAAATGTGGCAAAGAAACGGCT
ACAGTCGAAGCACATGAAGAATACTCGGTAAGAAATCTCTCACTCTCGAG
TAACATGCTCCCTTCAGTATTTTCCACCGCCAATCTAGCGATGAAAGCCA
GGAGGCGGTGGCGCATGACATTTCACCGACAAGTCGATGTTAGTTAACTG
TAGACTTGTTCACCGTTACCCGTGTTTCTCACGCTTTCACCCACACTGTC
TGCCCGCGCACCGATGCCGCTCACTGTGACTCGGCCTATGCAGGCGAGGA
GAGCTCCAAGAGTCCAAGAACACGCCGGATGCGACCCCAGCGTGATAGCG
CGATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1098:1..3308+

>mRNA_Ecto-sp8_S_contig1098.1345.1 ID=mRNA_Ecto-sp8_S_contig1098.1345.1|Name=mRNA_Ecto-sp8_S_contig1098.1345.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1098:1..3308+ (Ectocarpus species8 EcLAC_412)
CTACCAGCCTCAGGCACAAGCAGCTCTGCGTCGCCAAGACTCCCGCCCAT
GAAGTCAGCGCCATCCCCTTCAAACGACGAATCTCCCCTCCCCGGTTTGT
CGCTCTCTCCGAGAAGTGGCGCGCACTCCGCCCGTCGGGTTCGAAGCCTT
CCCCCGACTCCCAAGAGAGCTTCGTGCACCAACCTTGACCCTGTTAGCGA
TAGCGTCGAGTTCGCTCGGCCTCAGAGTCGCGGCGGCCCGGCCGGCAACG
GCAGCAAATTTTCTCCCCTCCTCGATGCGAAAGAGGGTTCCACGTCGCCG
CGGTATAGAGATTCCGCCCTATGCGCAGCGGATAGCAACAGGCGCGGCGG
GGAGCTTGCAGGTGAACGTGGCGGTGGCGGGTTAGGACGCGAACCGCGAC
GCCTTTCGAGGGGGGCGGCGGAAGCGAAAAGCGAGGTCGGGTGCACTCGT
CTTCCGGGGACAAAGTCCACCTCACCACCGCGAGACAGAGGAGAGGGTAG
CGAGGGTAGACCCCGTTTGTCGAGTGAGAGTCTTCCGGGCGCTTCCCCTT
CATCTTCCAACGGCGCTCAGCGCAGGCAGCGGAGCTCGCAGAACGTGCAT
GCGTCGCATTCCACGAAACGATCGAATGGGGACGTTAGTCCCGCCGGGGG
AGAACGCAACGGCAACGACCGCCACGAGGGCTACGGCGAGGAAAAGGACT
TCGGAAGCGTTCCCAACAGCCCGTCCACGGCCAGAGGCGAGGAGAGCTCC
AAGAGTCCAAGAACACGCCGGATGCGACCCCAGCGTGATAGCGCGATGTA
G
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