mRNA_Ecto-sp8_S_contig10963.1333.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Match: A0A6H5JH71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH71_9PHAE) HSP 1 Score: 319 bits (818), Expect = 5.610e-101 Identity = 208/212 (98.11%), Postives = 210/212 (99.06%), Query Frame = 1
Query: 4 QVSLPLKPPPQPDPPENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQVAAGFTDRMVRAWRTAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLADTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGRVGSSAGYV 639
QVSLPLKPPPQPDP ENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTF+NAVDTLCCLKPTRDGMQVAAGFTDRMVRAWRTAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DSGL+DTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGRVGSSAGYV
Sbjct: 245 QVSLPLKPPPQPDPSENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFFNAVDTLCCLKPTRDGMQVAAGFTDRMVRAWRTAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DSGLSDTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGRVGSSAGYV 455
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI) HSP 1 Score: 321 bits (822), Expect = 1.020e-98 Identity = 342/479 (71.40%), Postives = 344/479 (71.82%), Query Frame = 1
Query: 7 VSLPLKPPPQPDPPENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQVAAGFTDRMVRAWRTAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLADTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGRVGSSAGYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDCASPLRIFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSACNREGDGRNGVDSSASLAEQMKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPWPSRGDGPSHGPVHSFGTRNTGVFNVLFTKRNLVIASGVCRNKS 1443
VSLPLKPPPQPDPPENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQ DSGLADTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGRVG SAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDCASPLRIFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX SAC R+GDGRNGVDSSASLAEQMK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPWPSRGDGPS+GPVHSFGTRNTGVFNVLFTKRNLVIASGVCRNKS
Sbjct: 326 VSLPLKPPPQPDPPENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQRNGAAXXXXXXXXX---------------------------------------------------------------QDSGLADTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGRVGGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDCASPLRIFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSGRLEGSALVXXXXXXXXXXXXXA--------------------------------------SACKRDGDGRNGVDSSASLAEQMKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPWPSRGDGPSYGPVHSFGTRNTGVFNVLFTKRNLVIASGVCRNKS 703
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Match: A0A6H5JET0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET0_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 5.780e-22 Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1
Query: 1306 APWPSRGDGPSHGPVHSFGTRNTGVFNVLFTKRNLVIASGVCRNKS 1443
APWPSRGDGPSHGPVHSFGTRNTGVFNVLFTKRNLVIASGVCRNKS
Sbjct: 39 APWPSRGDGPSHGPVHSFGTRNTGVFNVLFTKRNLVIASGVCRNKS 84
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Match: A0A835YMV1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV1_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.660e-9 Identity = 57/188 (30.32%), Postives = 77/188 (40.96%), Query Frame = 1
Query: 61 YLR-LALRPLDS-AQLKDTLSTPEGGARPF-----LANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQVAAGFTDRMVRAWRTAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLADTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDI 603
YLR + L+PLD A + A P LA+ L P V+M T N +L C+ D +VAAGF D R +R+ P A+ + + P VRLVGH++P+Y +SW+PD RFLL+ GGDG VRLWD+
Sbjct: 327 YLRNVVLQPLDPRAAVASAAEALRKAAAPSDADAALADALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVYRSGPQQ----GAEGSGSEPP---------------------------------------------------PVRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDL 459
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Match: A0A099P2A2_PICKU (LisH domain-containing protein n=4 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099P2A2_PICKU) HSP 1 Score: 61.6 bits (148), Expect = 2.470e-6 Identity = 45/175 (25.71%), Postives = 69/175 (39.43%), Query Frame = 1
Query: 85 LDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQVAAGFTDRMVRAWRTAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLADTV--RLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDI 603
L S+ +T +G +++ P P V M TF+N + L L+ D +A GF D ++ W P R+ +SG+ + + +LVGHS PVYG+S+SPDG++LLS+ D VRLW +
Sbjct: 461 LTSSSYSHLNNTGDGSRNVYISQPSLPSVCMYTFHNTNNDLTSLEYHPDSTMIAGGFQDSFIKLW-------------SIDGSPLRSVLKNDPYNRDIDLNDDNDNGGA---------------------NSGIPNILSRKLVGHSGPVYGLSFSPDGKYLLSSSADSTVRLWSL 601
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Match: A0A0L0DLT8_THETB (Transcription initiation factor TFIID subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DLT8_THETB) HSP 1 Score: 60.5 bits (145), Expect = 5.050e-6 Identity = 50/179 (27.93%), Postives = 68/179 (37.99%), Query Frame = 1
Query: 85 LDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQVAAGFTDRMVRAWR------TAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLADTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDI 603
L++A+L + S E +R L++ P M TF+N DTL C +R G +A GF D +R W T N P A+ ++V L GHS PVYG+S+SPD RF +SA DG RLW +
Sbjct: 314 LETAELSELESFAEVRSRMALSSTALPSAAMYTFFNTYDTLNCASFSRSGGLMATGFGDSSIRLWDLEGRHLTGLNPELVPIAE---------------------------------------------------------NSVVLHGHSGPVYGLSFSPDSRFFVSASQDGTARLWSM 435
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Match: A0A507CX71_9FUNG (TFIID_NTD2 domain-containing protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CX71_9FUNG) HSP 1 Score: 60.1 bits (144), Expect = 6.430e-6 Identity = 40/145 (27.59%), Postives = 51/145 (35.17%), Query Frame = 1
Query: 163 PHVVMVTFYNAVDTLCCLKPTRDGMQVAAGFTDRMVRAWRTAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLADTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLW 597
P ++ TF+N D + C+ + D ++AGFT+ VR W D+ A RLVGHS VYGVS+SPD R LLS GD VRLW
Sbjct: 321 PSIICYTFHNTYDNMSCISMSEDAKYLSAGFTESFVRVWN-------------------------------------------------------------LKDDNDPASGYRLVGHSAAVYGVSFSPDSRALLSCSGDNTVRLW 404
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Match: A0A4T0X3H0_9ASCO (LisH domain-containing protein n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0X3H0_9ASCO) HSP 1 Score: 58.9 bits (141), Expect = 1.690e-5 Identity = 49/186 (26.34%), Postives = 74/186 (39.78%), Query Frame = 1
Query: 64 LRLALRPLDSAQLKDTLSTPE------GGARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQVAAGFTDRMVRAWRTAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLADTV--RLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLW 597
LR A++ + ++ + L+T G + F++ P P V M TF+N + L L+ D +A GF D ++ W + P + P + DS L +LVGHS PVYG+S+SPDG++LLS+ D VRLW
Sbjct: 393 LRRAIQEISDSRSRIKLTTSSHSHLNANGHKVFISQPALPSVCMYTFHNTNNDLTSLEFHPDSTMIAGGFQDSFIKLW----SIDGSPLKSIIKSDPYNSKV-----------------------------------------DSDLPTNTSRKLVGHSGPVYGLSFSPDGKYLLSSSADSTVRLW 533
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Match: A0A7S0HK76_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HK76_9CRYP) HSP 1 Score: 55.1 bits (131), Expect = 3.430e-5 Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 502 LVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGR 615
L GH + +Y VSWSPDGRF+ +AG DG +++WD +G+
Sbjct: 67 LRGHEEAIYSVSWSPDGRFVQTAGSDGAIKIWDWRKGK 104
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Match: A0A150GP73_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GP73_GONPE) HSP 1 Score: 57.8 bits (138), Expect = 4.500e-5 Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1
Query: 502 LVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGR 615
LVGH PV V+WSPDGR + AGGDG VRLW+ A GR
Sbjct: 1127 LVGHMGPVNAVAWSPDGRLIAGAGGDGTVRLWEAATGR 1164 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10963.1333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10963.1333.1 >prot_Ecto-sp8_S_contig10963.1333.1 ID=prot_Ecto-sp8_S_contig10963.1333.1|Name=mRNA_Ecto-sp8_S_contig10963.1333.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=482bp QQVSLPLKPPPQPDPPENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLAback to top mRNA from alignment at Ecto-sp8_S_contig10963:831..6558+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10963.1333.1 ID=mRNA_Ecto-sp8_S_contig10963.1333.1|Name=mRNA_Ecto-sp8_S_contig10963.1333.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5728bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10963:831..6558+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10963:831..6558+ >mRNA_Ecto-sp8_S_contig10963.1333.1 ID=mRNA_Ecto-sp8_S_contig10963.1333.1|Name=mRNA_Ecto-sp8_S_contig10963.1333.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1446bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10963:831..6558+ (Ectocarpus species8 EcLAC_412)back to top |