mRNA_Ecto-sp8_S_contig10937.1313.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10937.1313.1
Unique NamemRNA_Ecto-sp8_S_contig10937.1313.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10937.1313.1 vs. uniprot
Match: D8LC79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC79_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.040e-24
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 CLQTMAEHRGGVTALAFAGDTTLISTARDGSVRLWRPQRGRKLLRFPFF 147
            CLQTMAEHRGGVTALAFAGDTTLISTARDGSVRLWRPQRGRKLLRFPFF
Sbjct:  148 CLQTMAEHRGGVTALAFAGDTTLISTARDGSVRLWRPQRGRKLLRFPFF 196
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10937.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC79_ECTSI1.040e-24100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10937contigEcto-sp8_S_contig10937:834..980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score94.7
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog2880.D8LC79
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0032182,GO:0043130,GO:0044424,GO:0044464
Exons1
EggNOG free text desc.regulation of protein monoubiquitination
EggNOG OGsKOG0308@1,KOG0308@2759
Cds size135
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143182.328908-CDS-Ecto-sp8_S_contig10937:833..9681681143182.328908-CDS-Ecto-sp8_S_contig10937:833..968Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10937 834..968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143182.340245-UTR-Ecto-sp8_S_contig10937:968..9801681143182.340245-UTR-Ecto-sp8_S_contig10937:968..980Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10937 969..980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10937.1313.1prot_Ecto-sp8_S_contig10937.1313.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10937 834..968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10937.1313.1

>prot_Ecto-sp8_S_contig10937.1313.1 ID=prot_Ecto-sp8_S_contig10937.1313.1|Name=mRNA_Ecto-sp8_S_contig10937.1313.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=45bp
MAEHRGGVTALAFAGDTTLISTARDGSVRLWRPQRGRKLLRFPFF
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mRNA from alignment at Ecto-sp8_S_contig10937:834..980-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10937.1313.1 ID=mRNA_Ecto-sp8_S_contig10937.1313.1|Name=mRNA_Ecto-sp8_S_contig10937.1313.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10937:834..980- (Ectocarpus species8 EcLAC_412)
TGCCTACAGACGATGGCCGAGCACAGGGGTGGAGTGACGGCCCTAGCGTT
TGCTGGAGACACAACGCTAATCTCTACAGCTCGAGACGGGAGTGTACGAC
TATGGCGTCCGCAGCGGGGTCGAAAGCTCTTGCGCTTCCCTTTCTTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10937:834..980-

>mRNA_Ecto-sp8_S_contig10937.1313.1 ID=mRNA_Ecto-sp8_S_contig10937.1313.1|Name=mRNA_Ecto-sp8_S_contig10937.1313.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10937:834..980- (Ectocarpus species8 EcLAC_412)
ATGGCCGAGCACAGGGGTGGAGTGACGGCCCTAGCGTTTGCTGGAGACAC
AACGCTAATCTCTACAGCTCGAGACGGGAGTGTACGACTATGGCGTCCGC
AGCGGGGTCGAAAGCTCTTGCGCTTCCCTTTCTTC
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