mRNA_Ecto-sp8_S_contig10933.1306.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10933.1306.1
Unique NamemRNA_Ecto-sp8_S_contig10933.1306.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.520e-9
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 EFQGKHEGAEPLYQRSHAICEESLGPDHPAVATALNNLALLLQSQ 135
            E QGKHE AEPLY+RS AI EE  GPDHP VAT LNNLA LL++Q
Sbjct:   79 ESQGKHEEAEPLYRRSLAIDEEVYGPDHPEVATDLNNLAGLLETQ 123
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BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 57.0 bits (136), Expect = 7.720e-8
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 EFQGKHEGAEPLYQRSHAICEESLGPDHPAVATALNNLA 117
            E QGK+E AEPLYQR+  I E  LGPDHP+VAT LNNLA
Sbjct:    2 ESQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLA 40
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BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.580e-7
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 FQGKHEGAEPLYQRSHAICEESLGPDHPAVATALNNLALLLQSQ 135
             QGK+  AEPLY+RS AI E  LGP+HP V T+LNN ALLL+ Q
Sbjct:  659 IQGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQ 702
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BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06)

HSP 1 Score: 57.0 bits (136), Expect = 1.310e-6
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 EFQGKHEGAEPLYQRSHAICEESLGPDHPAVATALNNLA 117
            E QGK+E AEPLYQR+  I E  LGPDHP+VAT LNNLA
Sbjct:    2 ESQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLA 40
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BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Match: D8LQ15_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ15_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.650e-6
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    7 QGKHEGAEPLYQRSHAICEESLGPDHPAVATALN 108
            QGK+E AEPL +RS AICE+SLGPDHP VATALN
Sbjct:  615 QGKYEEAEPLSERSLAICEKSLGPDHPDVATALN 648
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BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.860e-6
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    7 QGKHEGAEPLYQRSHAICEESLGPDHPAVATALNNLALLLQSQ 135
            QGK+  AEPLY+R  AI E +LGP+HP VATALNN A LL+ Q
Sbjct:   30 QGKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLLEDQ 72
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BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.320e-6
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    4 FQGKHEGAEPLYQRSHAICEESLGPDHPAVATALNNLALLL 126
            FQGK++ AEPLY+RS AI E+  GPDHP VATALNN   LL
Sbjct:  350 FQGKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNNWVRLL 390
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BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.070e-6
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    4 FQGKHEGAEPLYQRSHAICEESLGPDHPAVATALNNLALL 123
            FQGK+E A PLY+RS AI E+ LGPDHP VA +LNN ALL
Sbjct:  797 FQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALL 836
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 5.650e-6
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 FQGKHEGAEPLYQRSHAICEESLGPDHPAVATALNNLALLLQS 132
            FQGK E A  L+ RS AI E++LGPDHP VAT+LNNL+ LL+S
Sbjct:   79 FQGKPEEAGALFNRSLAIREKALGPDHPDVATSLNNLSCLLES 121
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 9.780e-6
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    4 FQGKHEGAEPLYQRSHAICEESLGPDHPAVATALNNLALLLQS 132
            FQGK E A PL +RS AI E  LGPDHP VAT+LNNL  LL+S
Sbjct: 1972 FQGKLEEAGPLVKRSLAIKERVLGPDHPDVATSLNNLGCLLES 2014
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10933.1306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G180_ECTSI4.520e-973.33TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
UPI0013D295287.720e-871.79tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5KXS7_9PHAE7.580e-763.64NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
UPI0013D05A061.310e-671.79tetratricopeptide repeat-containing protein n=1 Ta... [more]
D8LQ15_ECTSI2.650e-679.41Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5K5H9_9PHAE2.860e-665.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY6_9PHAE3.320e-668.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE5.070e-670.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPL8_9PHAE5.650e-665.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN5_9PHAE9.780e-667.44CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10933contigEcto-sp8_S_contig10933:4421..5698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score64.3
Seed ortholog evalue6.5e-08
Seed eggNOG ortholog2880.D7G180
Model size528
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Cds size528
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143181.9154832-CDS-Ecto-sp8_S_contig10933:4420..45521681143181.9154832-CDS-Ecto-sp8_S_contig10933:4420..4552Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10933 4421..4552 -
1681143181.923975-CDS-Ecto-sp8_S_contig10933:4759..48851681143181.923975-CDS-Ecto-sp8_S_contig10933:4759..4885Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10933 4760..4885 -
1681143181.9313507-CDS-Ecto-sp8_S_contig10933:5140..52751681143181.9313507-CDS-Ecto-sp8_S_contig10933:5140..5275Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10933 5141..5275 -
1681143181.9387412-CDS-Ecto-sp8_S_contig10933:5563..56981681143181.9387412-CDS-Ecto-sp8_S_contig10933:5563..5698Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10933 5564..5698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10933.1306.1prot_Ecto-sp8_S_contig10933.1306.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10933 4421..5698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10933.1306.1

>prot_Ecto-sp8_S_contig10933.1306.1 ID=prot_Ecto-sp8_S_contig10933.1306.1|Name=mRNA_Ecto-sp8_S_contig10933.1306.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=176bp
EFQGKHEGAEPLYQRSHAICEESLGPDHPAVATALNNLALLLQSQGKYAE
ADPLYLRTIEIGKNTLGPNHPDVATQLNNRAWLLSKCSSAGKFVEAKPLY
RRATEIWETALGPEHPNVATALNNRALLLEAQGKYDEAEPLYERSQAIRE
KVLGPEHPDVAQSLNNRAELLESQVR
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mRNA from alignment at Ecto-sp8_S_contig10933:4421..5698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10933.1306.1 ID=mRNA_Ecto-sp8_S_contig10933.1306.1|Name=mRNA_Ecto-sp8_S_contig10933.1306.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1278bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10933:4421..5698- (Ectocarpus species8 EcLAC_412)
GAGTTCCAGGGCAAGCATGAGGGAGCTGAGCCGCTGTATCAACGCTCGCA
CGCCATCTGTGAGGAATCTCTTGGCCCTGATCACCCCGCGGTGGCGACAG
CACTCAACAACCTGGCGTTGTTGTTGCAGAGCCAGGTGAGAACCGAAGGA
TATTTTCTTGAACTTTCGTAGGGTTCAAATTGCTTTGTTAAACTTTTCGT
TTTTTGGTGCATCGCTGGCTGACCGAACCCACTTTATGTTGCAAGTACGA
CGACGCCGAGCTACTTAATGAACGATCACAAGTCAACCCAACAGGAGGCG
CTGGGTCCGTAGCGATCCCGATGTGACCCTGTCGGGGGGCGGGATTTATG
CGCCATTGTTCCTCGGCATTATCCTGACAAAGCCTTGGTGTACACCTTTA
CGTTTTTCCTCCTCCCCTGCCAGGGGAAGTATGCTGAGGCAGACCCTCTG
TACCTTCGAACTATTGAAATCGGAAAGAATACGCTGGGTCCTAACCACCC
TGATGTTGCCACACAGCTCAACAACCGGGCGTGGTTGTTGAGCAAATGTT
CCTCCGCAGTCTAGTTTATCTTTCACGATGACTACCACTTAACCACTATT
CGACGCTGCCCACCGCATCTAGGGTAAATACACGGAGGCTGAACCGCTCT
ACGAACGAGCTGCTGCGATCAACGTGGCCGTTCTGGGCCCAGAACACCCA
AGAGTGGCAACAGATCTCAACAACCGGGCGGGGTTGTTGGGCAATTGTTA
GTCCGTTGTCAATCCCCGCTAGCATTGACCACACTTCTGACATGCTTGCC
CTTCACGTCTCAGGGTAAGTTCGTCGAGGCCAAGCCTCTGTACAGGCGGG
CGACTGAGATTTGGGAGACAGCATTAGGTCCTGAGCACCCGAACGTGGCC
ACAGCGCTCAACAACCGGGCGCTGTTGTTGGAGGCACAGGTGAGGGCCGT
GAAGAATTTTCCAGGGAATTTCTCGTGGTACCCGGTAGATTTTGAGAGTG
CTCAACAACCGGGCGGCGTTGTTGAGGACACAGGTGAGATCCGAAAATTT
CTTCTAGATGCTTGCAGCAGAAGGGAATGTCTCCGTAGTTCTAGAACGAC
TGTGTACCATAACACGACCCCTGCCTCGCTGTTGGCTGTATTCCAGGGGA
AGTATGACGAAGCCGAGCCGCTGTATGAGCGGTCACAGGCCATACGAGAG
AAGGTGCTGGGTCCAGAGCACCCTGATGTGGCGCAGTCGCTCAACAACCG
GGCGGAGTTGTTGGAGAGTCAGGTGAGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10933:4421..5698-

>mRNA_Ecto-sp8_S_contig10933.1306.1 ID=mRNA_Ecto-sp8_S_contig10933.1306.1|Name=mRNA_Ecto-sp8_S_contig10933.1306.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10933:4421..5698- (Ectocarpus species8 EcLAC_412)
GAGTTCCAGGGCAAGCATGAGGGAGCTGAGCCGCTGTATCAACGCTCGCA
CGCCATCTGTGAGGAATCTCTTGGCCCTGATCACCCCGCGGTGGCGACAG
CACTCAACAACCTGGCGTTGTTGTTGCAGAGCCAGGGGAAGTATGCTGAG
GCAGACCCTCTGTACCTTCGAACTATTGAAATCGGAAAGAATACGCTGGG
TCCTAACCACCCTGATGTTGCCACACAGCTCAACAACCGGGCGTGGTTGT
TGAGCAAATGTTCCTCCGCAGGTAAGTTCGTCGAGGCCAAGCCTCTGTAC
AGGCGGGCGACTGAGATTTGGGAGACAGCATTAGGTCCTGAGCACCCGAA
CGTGGCCACAGCGCTCAACAACCGGGCGCTGTTGTTGGAGGCACAGGGGA
AGTATGACGAAGCCGAGCCGCTGTATGAGCGGTCACAGGCCATACGAGAG
AAGGTGCTGGGTCCAGAGCACCCTGATGTGGCGCAGTCGCTCAACAACCG
GGCGGAGTTGTTGGAGAGTCAGGTGAGA
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