mRNA_Ecto-sp8_S_contig10933.1305.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10933.1305.1
Unique NamemRNA_Ecto-sp8_S_contig10933.1305.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.340e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   16 AIREKVLGPEHPDVAQSLNNRAGLLESQGKYSEAEPLY 129
            AI+EKVLGP+HP +A +LNNRAGLLE+QGKY EAEPLY
Sbjct:   84 AIKEKVLGPDHPSLATTLNNRAGLLEAQGKYVEAEPLY 121
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BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Match: A0A1F2STV2_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 TaxID=1797178 RepID=A0A1F2STV2_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.110e-10
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   16 AIREKVLGPEHPDVAQSLNNRAGLLESQGKYSEAEPLY 129
            AI EK LGPEHP+V QSLNN AGL  +QGKY++AEPLY
Sbjct:    2 AIWEKALGPEHPNVGQSLNNLAGLYAAQGKYADAEPLY 39
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BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Match: UPI001914FD80 (tetratricopeptide repeat protein n=2 Tax=Ktedonobacter robiniae TaxID=2778365 RepID=UPI001914FD80)

HSP 1 Score: 65.1 bits (157), Expect = 3.270e-10
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    7 RSQAIREKVLGPEHPDVAQSLNNRAGLLESQGKYSEAEPLY 129
            R   +REKVLGPEHPD A+SLNN AGL +SQGKY  AEPLY
Sbjct:   28 RGMLLREKVLGPEHPDTARSLNNLAGLYKSQGKYELAEPLY 68
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BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Match: A0A841V5S9_9NOSO (Tetratricopeptide repeat protein n=3 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A841V5S9_9NOSO)

HSP 1 Score: 63.9 bits (154), Expect = 4.200e-10
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 AIREKVLGPEHPDVAQSLNNRAGLLESQGKYSEAEPLY 129
            A+R K+LG EHPDVA SLNN AGL +SQG+YSEAEPLY
Sbjct:    5 ALRRKLLGEEHPDVATSLNNLAGLYDSQGRYSEAEPLY 42
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BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Match: A0A1B7VCZ1_9NOST (Uncharacterized protein (Fragment) n=1 Tax=Anabaena sp. LE011-02 TaxID=1710892 RepID=A0A1B7VCZ1_9NOST)

HSP 1 Score: 59.7 bits (143), Expect = 6.510e-10
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   22 REKVLGPEHPDVAQSLNNRAGLLESQGKYSEAEPLY 129
            R+K+LG +HPDVA SLNN AGL  SQGKY+EAEPLY
Sbjct:    1 RQKLLGDDHPDVASSLNNLAGLYYSQGKYNEAEPLY 36
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BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Match: A0A535FJA6_9CHLR (Tetratricopeptide repeat protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535FJA6_9CHLR)

HSP 1 Score: 59.7 bits (143), Expect = 1.230e-9
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 YERSQAIREKVLGPEHPDVAQSLNNRAGLLESQGKYSEAEPLY 129
            Y R+ AI E+ LGP HPD+A SLNN A L  SQGK+SEAEPLY
Sbjct:    2 YTRALAIYERHLGPTHPDMASSLNNLALLYNSQGKFSEAEPLY 44
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BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.620e-9
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    4 ERSQAIREKVLGPEHPDVAQSLNNRAGLLESQ 99
            ERSQ IREKVLGPEHPDVAQSLNNRAGLLE+Q
Sbjct:  509 ERSQTIREKVLGPEHPDVAQSLNNRAGLLEAQ 540
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BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Match: A0A838GVB0_9BACT (CHAT domain-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A838GVB0_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 2.230e-9
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 YERSQAIREKVLGPEHPDVAQSLNNRAGLLESQGKYSEAEPLY 129
            Y+RS AIREK LG +HPDVA SLNN AGL E++G Y+ AEPL+
Sbjct:    1 YQRSLAIREKALGAQHPDVAVSLNNLAGLYEAKGDYARAEPLH 43
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Match: A0A6H5JIH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.340e-9
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 YERSQAIREKVLGPEHPDVAQSLNNRAGLLESQGKYSEAEPLY 129
            YERSQAI  KV+GPEHPDVA  L NRA LL  +GK +EAEPLY
Sbjct: 1651 YERSQAITAKVIGPEHPDVATVLKNRALLLAYEGKDAEAEPLY 1693
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Match: UPI001FB5CE29 (tetratricopeptide repeat protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=UPI001FB5CE29)

HSP 1 Score: 59.3 bits (142), Expect = 2.420e-9
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 YERSQAIREKVLGPEHPDVAQSLNNRAGLLESQGKYSEAEP 123
            Y +S ++R ++LG EHPDVA SLNN AGL +SQG+YSEAEP
Sbjct:    4 YLQSLSLRRRLLGEEHPDVATSLNNLAGLYKSQGRYSEAEP 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10933.1305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0C4_9PHAE2.340e-1178.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1F2STV2_9BACT2.110e-1073.68Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
UPI001914FD803.270e-1073.17tetratricopeptide repeat protein n=2 Tax=Ktedonoba... [more]
A0A841V5S9_9NOSO4.200e-1076.32Tetratricopeptide repeat protein n=3 Tax=unclassif... [more]
A0A1B7VCZ1_9NOST6.510e-1075.00Uncharacterized protein (Fragment) n=1 Tax=Anabaen... [more]
A0A535FJA6_9CHLR1.230e-967.44Tetratricopeptide repeat protein n=1 Tax=Chlorofle... [more]
A0A6H5KIY6_9PHAE1.620e-993.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A838GVB0_9BACT2.230e-967.44CHAT domain-containing protein n=1 Tax=Pyrinomonad... [more]
A0A6H5JIH9_9PHAE2.340e-972.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001FB5CE292.420e-965.85tetratricopeptide repeat protein n=1 Tax=Nostoc sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10933contigEcto-sp8_S_contig10933:2081..3001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size292
Hectar predicted targeting categoryother localisation
Exons3
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143181.9611661-CDS-Ecto-sp8_S_contig10933:2081..21471681143181.9611661-CDS-Ecto-sp8_S_contig10933:2081..2147Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10933 2082..2147 -
1681143181.9688604-CDS-Ecto-sp8_S_contig10933:2456..25821681143181.9688604-CDS-Ecto-sp8_S_contig10933:2456..2582Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10933 2457..2582 -
1681143181.9761484-CDS-Ecto-sp8_S_contig10933:2902..30011681143181.9761484-CDS-Ecto-sp8_S_contig10933:2902..3001Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10933 2903..3001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10933.1305.1prot_Ecto-sp8_S_contig10933.1305.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10933 2082..3001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10933.1305.1

>prot_Ecto-sp8_S_contig10933.1305.1 ID=prot_Ecto-sp8_S_contig10933.1305.1|Name=mRNA_Ecto-sp8_S_contig10933.1305.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=97bp
YERSQAIREKVLGPEHPDVAQSLNNRAGLLESQGKYSEAEPLYERCQAIE
EKVLGPEHPSLATTLNNRARLLIAQEKHTEALPLLERALRIRTNKLG
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mRNA from alignment at Ecto-sp8_S_contig10933:2081..3001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10933.1305.1 ID=mRNA_Ecto-sp8_S_contig10933.1305.1|Name=mRNA_Ecto-sp8_S_contig10933.1305.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=921bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10933:2081..3001- (Ectocarpus species8 EcLAC_412)
TATGAGCGGTCACAAGCCATACGAGAGAAGGTGCTTGGTCCGGAGCATCC
AGACGTGGCCCAGTCGCTCAACAACCGGGCGGGGTTGTTGGAGAGTCAGG
TGAGAGCCAAACGATGTTTCTAGAAGCATCTAGAACGAATGGGTCGTGCA
TTTGTTCCTCCGCAACGTAGTATACTATAATAGCAATGACCACACCTTCC
TCCCTCTTTTCCCTCATATGTCAGGGAAAGTATGAAGACCGGAACCGTTG
TACGTAAGAGCTATCGCTATCGGAGAGAAGGCGTTGGGCCGAGAGCATCC
AGATCTTGCCGTGTGGCTCAATGACCGGGCGGGGTTGTTGAGAAATAGTT
TCTCCACAATCCCATCTACGATTTTCACACTGAAATACGACGTTACCACG
CTGTCCTCACTGCATCCAGGGCAAATACTCGGAAGCTGAGCCACTATATG
AGCGGTGTCAGGCGATAGAGGAGAAGGTTCTAGGCCCTGAGCACCCAAGT
CTAGCCACAACGCTCAACAACCGGGCGAGGTTGTTGATAGCCCAGGTGAG
AACCGAAATAGCTTTCCGGGATTTTTTGTGGCGTCCTCAGAACGGTTTTG
GACAAGAAGGTTAGACGCTCGTTGTCTTACCGCGAATTGGCTGACGAACG
GTGACATCAGTTGCCAATGGCTTGGACGAAACTAGTATGATGCCGGCATG
TACTGTATTGCAGTTTGACCGGACCACTTTTCCCCCCCACTACTGCTTGT
GTGTACCACGTGGTGAGCGAATCGGTGTTACCCCAGTCATCGTAAAACCG
TTTGCGCACCCAATTTGGTTCTCAACCCTGCGTCTCAATCTCAATCGCCC
GCAGGAGAAGCACACGGAGGCACTTCCACTATTGGAGAGGGCCCTCAGGA
TCCGTACCAACAAGCTTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10933:2081..3001-

>mRNA_Ecto-sp8_S_contig10933.1305.1 ID=mRNA_Ecto-sp8_S_contig10933.1305.1|Name=mRNA_Ecto-sp8_S_contig10933.1305.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10933:2081..3001- (Ectocarpus species8 EcLAC_412)
TATGAGCGGTCACAAGCCATACGAGAGAAGGTGCTTGGTCCGGAGCATCC
AGACGTGGCCCAGTCGCTCAACAACCGGGCGGGGTTGTTGGAGAGTCAGG
GCAAATACTCGGAAGCTGAGCCACTATATGAGCGGTGTCAGGCGATAGAG
GAGAAGGTTCTAGGCCCTGAGCACCCAAGTCTAGCCACAACGCTCAACAA
CCGGGCGAGGTTGTTGATAGCCCAGGAGAAGCACACGGAGGCACTTCCAC
TATTGGAGAGGGCCCTCAGGATCCGTACCAACAAGCTTGGT
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