mRNA_Ecto-sp8_S_contig10917.1295.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10917.1295.1
Unique NamemRNA_Ecto-sp8_S_contig10917.1295.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Match: D7G4R0_ECTSI (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R0_ECTSI)

HSP 1 Score: 647 bits (1668), Expect = 8.440e-231
Identity = 317/332 (95.48%), Postives = 324/332 (97.59%), Query Frame = 1 
Query:   10 MSDSKSPKGEDSHNQHNSSD-SDIDVIFSDTDIVILNKPTGLRTVPGKAVGPEAETRVHVEWHSGTKRQRQEFWTDVVHTACESLLHDEKTEGEEEFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNESHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPHPRTGEMVEFQCPPPF 1002
            MS  KS KGEDS NQH+SSD SD+DVIFSD DIV+LNKPTGLRTVPGKAVGPEAETRVHVEWHSGTKRQRQEFWTDVVHTACESLL+DEKTEGEEEFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNE+HTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEG AKS+RLLLHARRISFPHPRTGE VEF+CPPPF
Sbjct:    1 MSHDKSTKGEDSRNQHSSSDCSDVDVIFSDPDIVVLNKPTGLRTVPGKAVGPEAETRVHVEWHSGTKRQRQEFWTDVVHTACESLLNDEKTEGEEEFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGTAKSERLLLHARRISFPHPRTGETVEFECPPPF 332
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Match: A0A2E2KKK0_9GAMM (RNA pseudouridine synthase n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2E2KKK0_9GAMM)

HSP 1 Score: 171 bits (434), Expect = 8.900e-47
Identity = 87/177 (49.15%), Postives = 117/177 (66.10%), Query Frame = 1 
Query:  472 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNESHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPHPRTGEMVEFQCPPPF 1002
            DCL  RVQ+ +P AR VHRLD  TSGL+V+ALT+EA R++ R F+ER   K Y A++ G+ ++  K G V   L  D +NRP Q+   E G  + T+W+        T V+ TP+TGR+HQ+R+H   +GHP++GD  Y   + KA SDRLLLHA R+SFPHP TG++VEF  P PF
Sbjct:   32 DCLWRRVQAEFPTARVVHRLDYATSGLMVLALTLEAQRDISRSFQERKTGKLYQAIISGKPSE--KQGSVDLPLICDWENRPLQIVDHEHGKNALTHWKATGEDSRGTRVELTPITGRSHQLRVHMQAMGHPIIGDRFYADEDSKALSDRLLLHAERLSFPHPETGKVVEFTVPCPF 206
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Match: A0A136HHU2_9GAMM (RNA pseudouridine synthase n=2 Tax=Neptuniibacter TaxID=459520 RepID=A0A136HHU2_9GAMM)

HSP 1 Score: 171 bits (432), Expect = 2.020e-46
Identity = 89/182 (48.90%), Postives = 121/182 (66.48%), Query Frame = 1 
Query:  472 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNESHTNW-----ERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPHPRTGEMVEFQCPPPF 1002
            DCL  RVQ+++P AR VHRLD  TSG++V+ALT++A R + R F+ER   K Y A++ G    T   G V   LR D +NRP Q+   E+G  + T+W     ER  +  + T V+ TP+TGR+HQ+R+H   +GHP++GD  Y TPEG A+SDRLLLHA +++FPHP T E+VEF  P PF
Sbjct:   32 DCLWRRVQTQFPTARVVHRLDYATSGVMVLALTLDAQRALNRSFQERKTHKRYQAIIAG--TPTESDGSVELPLRCDWENRPLQIVDFEQGKSALTHWKVLATERAAQGIENTRVELTPITGRSHQLRVHMQAMGHPILGDRFYATPEGVAQSDRLLLHAEQLAFPHPLTNELVEFIIPCPF 211
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Match: UPI000833CE2D (pseudouridine synthase n=1 Tax=Neptuniibacter marinus TaxID=1806670 RepID=UPI000833CE2D)

HSP 1 Score: 170 bits (430), Expect = 3.610e-46
Identity = 91/181 (50.28%), Postives = 122/181 (67.40%), Query Frame = 1 
Query:  472 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKS--GEVTAKLRPDTDNRPKQMFCEEKGNESHTNWERIKRK--EDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPHPRTGEMVEFQCPPPF 1002
            DCL  RVQ+ +P AR VHRLD  TSG++V+ALT+EA R + R F+ER   K Y A++ G    TP+   G V   LR D +NRP Q+   E+G  + T+W+ + ++  E  T V+ TP+TGR+HQ+R+H   +GHP++GD  Y   EG+AKSDRLLLHA ++SFPHP TGE VEF  P PF
Sbjct:   32 DCLWRRVQTIFPTARVVHRLDYATSGVMVLALTLEAQRSLNRSFQERQTHKRYQAIISG----TPEQSEGSVELPLRCDWENRPLQIVDFEQGKNALTHWKVLAKESSEQDTRVELTPITGRSHQLRVHMQAMGHPILGDRFYADTEGQAKSDRLLLHAEQLSFPHPITGEFVEFFVPCPF 208
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Match: A0A1H9I0B1_9GAMM (Pseudouridine synthase n=1 Tax=Amphritea atlantica TaxID=355243 RepID=A0A1H9I0B1_9GAMM)

HSP 1 Score: 168 bits (425), Expect = 2.160e-45
Identity = 83/177 (46.89%), Postives = 117/177 (66.10%), Query Frame = 1 
Query:  472 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNESHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPHPRTGEMVEFQCPPPF 1002
            DCL  RVQ  +P AR VHRLD  TSG++V+AL+  + R +  QF+ER   K+Y A++ GR+AK   SG V   LR D +NRP Q+   ++G  + T+W  I++ +D + V+ TP+TGR+HQ+R+H   LGHP++GD  Y TP    +S+RLLLHA  +SF HP +GE + F  P PF
Sbjct:   38 DCLWRRVQQHYPTARIVHRLDYATSGVMVLALSATSHRHLSIQFQERKTDKSYQAIVAGRLAKN--SGTVNQPLRCDWENRPLQIIDHQQGKSAQTHWRLIEQLDDASRVELTPITGRSHQLRVHMQFLGHPILGDRFYATPRQIERSERLLLHAHSLSFSHPVSGEPLSFSSPMPF 212
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Match: A0A1Q8FZ42_9PROT (Pseudouridine synthase n=2 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8FZ42_9PROT)

HSP 1 Score: 168 bits (425), Expect = 3.010e-45
Identity = 90/200 (45.00%), Postives = 123/200 (61.50%), Query Frame = 1 
Query:  403 DKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNESHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPHPRTGEMVEFQCPPPF 1002
            DK S  L  TV G+  +      DCL  R ++ +P AR +HRLD DTSG++V+ALT  A   + +QF +R  SK+Y A ++G M  T  SG V   L  D  NRP+QM C E+G  + T+WE +   +  + V   P+TGR+HQ+R+H +HLGHP++GD+LY  P+  A SDRL LHAR + F HP  G  V F+  PPF
Sbjct:   32 DKPSGLL--TVPGNRPERA----DCLEARARADFPTARIIHRLDMDTSGVIVLALTAHAQAHIGKQFEKRQTSKSYIARVQGEM--TQSSGRVDQPLITDWPNRPRQMICHERGRRAVTDWEVLDIADGVSRVRLAPLTGRSHQLRVHMLHLGHPILGDNLYAPPDALAASDRLCLHARELGFRHPDGGAPVSFESRPPF 223
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Match: A0A8A4TYK2_9BACT (Pseudouridine synthase n=1 Tax=Sulfidibacter corallicola TaxID=2818388 RepID=A0A8A4TYK2_9BACT)

HSP 1 Score: 167 bits (424), Expect = 3.730e-45
Identity = 93/200 (46.50%), Postives = 118/200 (59.00%), Query Frame = 1 
Query:  403 DKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNESHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPHPRTGEMVEFQCPPPF 1002
            DK S  L  +V G L +      D L +R Q   PEAR VHRLD +TSG+ VMAL  ++ RE+ RQF +R   KTY A+  G M    + GEV   L  D  NRP+QM   E G ++ T W  I R+ DRTWV  TP+TGR+HQ+R+H   +GHP++GD LY  PE    + RLLLHA  +SF HP  G  + F  P PF
Sbjct:   28 DKPSGLL--SVPGRLPENK----DSLASRAQQLEPEARTVHRLDCETSGVTVMALDADSHRELSRQFHDREVLKTYVAICAGMMET--EQGEVNLPLVCDWPNRPRQMVDHENGKQAQTFWRVIHREPDRTWVQLTPITGRSHQLRVHLREIGHPILGDRLYAPPEVMRMAPRLLLHAEMLSFSHPHDGRKMTFYAPCPF 219
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Match: UPI001E4AF6DC (RluA family pseudouridine synthase n=1 Tax=Amphritea pacifica TaxID=2811233 RepID=UPI001E4AF6DC)

HSP 1 Score: 166 bits (421), Expect = 8.220e-45
Identity = 83/177 (46.89%), Postives = 115/177 (64.97%), Query Frame = 1 
Query:  472 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNESHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPHPRTGEMVEFQCPPPF 1002
            DCL  RVQ  +P AR VHRLD  TSG++V+AL   + R +  QF+ER   K+Y AV+ G++AK   SG +   LR D DNRP Q+   ++G  + T+W  I+  +D   V+ TP+TGR+HQ+R+H   LGHP++GD  Y TP    +S+RLLLHAR ++F HP +GE + F  P PF
Sbjct:   38 DCLWRRVQQHYPTARIVHRLDYATSGVMVLALNAASHRHLSIQFQERKTGKSYQAVVAGQLAKN--SGTINQPLRCDWDNRPLQIIDHQQGKSAQTHWRLIEPLDDACRVELTPITGRSHQLRVHMQFLGHPILGDRFYATPSQIERSERLLLHARSLTFSHPVSGESLTFSSPVPF 212
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Match: UPI0019D3727C (pseudouridine synthase n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D3727C)

HSP 1 Score: 166 bits (420), Expect = 1.500e-44
Identity = 81/177 (45.76%), Postives = 119/177 (67.23%), Query Frame = 1 
Query:  472 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNESHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPHPRTGEMVEFQCPPPF 1002
            DCL+TR+Q  +P A  VHRLD DTSG++++ LT E    + RQF++R   KTYTAV+ G  A+   SGE+   +  D DNRP+Q+ C E+G ++ T ++ ++R+ DR+ ++ +PVTGR+HQ+R+H   LGHP++G  +Y  PE  A +DRL+LHA RI F HP TG  +  +  P F
Sbjct:   47 DCLITRLQRDYPSASIVHRLDLDTSGIMIIPLTRECHAHISRQFQQRRVEKTYTAVVWGEPARD--SGEIDLPIACDWDNRPRQLICHERGKQALTRYQVLERRGDRSRLELSPVTGRSHQLRIHMRELGHPILGCDMYAHPEALAMADRLMLHATRIGFEHPATGTWLRGESLPDF 221
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Match: A0A6P2AHX5_9BACT (RluA family pseudouridine synthase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6P2AHX5_9BACT)

HSP 1 Score: 166 bits (419), Expect = 1.510e-44
Identity = 87/182 (47.80%), Postives = 118/182 (64.84%), Query Frame = 1 
Query:  469 VDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTD--NRPKQMFCEEKGNESHTNWERIKRKED--RTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPHPRTGEMVEFQCPPPF 1002
            +DCL TRVQ ++PEAR VHRLD+DTSG++VMA   EA RE+ RQF +R   K YTA++ G +     +G +   +R D D  N+P+Q+   E G  S T++  I+R +D  RT +D  P+TGR+HQ+R+H   +GHP++GD LY  PE  A SDRLLLHAR + F HP     + FQ   PF
Sbjct:   31 LDCLATRVQRQYPEARIVHRLDRDTSGVIVMAFDAEAHRELSRQFHDREVEKRYTAIVAGHVQSD--TGRIDLPIRKDMDPANKPRQLIDHEHGRPSITDYTVIERLDDPQRTRLDLKPITGRSHQLRLHLKEIGHPILGDDLYAPPEVLALSDRLLLHARELWFVHPGNAAPMHFQAACPF 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10917.1295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R0_ECTSI8.440e-23195.48Ribosomal large subunit pseudouridine synthase A n... [more]
A0A2E2KKK0_9GAMM8.900e-4749.15RNA pseudouridine synthase n=1 Tax=Oceanospirillac... [more]
A0A136HHU2_9GAMM2.020e-4648.90RNA pseudouridine synthase n=2 Tax=Neptuniibacter ... [more]
UPI000833CE2D3.610e-4650.28pseudouridine synthase n=1 Tax=Neptuniibacter mari... [more]
A0A1H9I0B1_9GAMM2.160e-4546.89Pseudouridine synthase n=1 Tax=Amphritea atlantica... [more]
A0A1Q8FZ42_9PROT3.010e-4545.00Pseudouridine synthase n=2 Tax=Maricaulis TaxID=74... [more]
A0A8A4TYK2_9BACT3.730e-4546.50Pseudouridine synthase n=1 Tax=Sulfidibacter coral... [more]
UPI001E4AF6DC8.220e-4546.89RluA family pseudouridine synthase n=1 Tax=Amphrit... [more]
UPI0019D3727C1.500e-4445.76pseudouridine synthase n=1 Tax=Parahaliea mediterr... [more]
A0A6P2AHX5_9BACT1.510e-4447.80RluA family pseudouridine synthase n=1 Tax=Phycisp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10917contigEcto-sp8_S_contig10917:1493..6382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score648.7
Seed ortholog evalue1.5e-183
Seed eggNOG ortholog2880.D7G4R0
Model size1607
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
Ec32 ortholog descriptionPseudouridine synthase, RsuA/RluB/C/D/E/F
Ec32 orthologEc-20_000700.1
Cds size996
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10917.1295.1prot_Ecto-sp8_S_contig10917.1295.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10917 2095..6373 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143181.1097698-UTR-Ecto-sp8_S_contig10917:1492..20941681143181.1097698-UTR-Ecto-sp8_S_contig10917:1492..2094Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10917 1493..2094 -
1681143181.200687-UTR-Ecto-sp8_S_contig10917:6373..63821681143181.200687-UTR-Ecto-sp8_S_contig10917:6373..6382Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10917 6374..6382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143181.1200128-CDS-Ecto-sp8_S_contig10917:2094..21421681143181.1200128-CDS-Ecto-sp8_S_contig10917:2094..2142Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10917 2095..2142 -
1681143181.1293118-CDS-Ecto-sp8_S_contig10917:2549..26721681143181.1293118-CDS-Ecto-sp8_S_contig10917:2549..2672Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10917 2550..2672 -
1681143181.1384482-CDS-Ecto-sp8_S_contig10917:3070..31811681143181.1384482-CDS-Ecto-sp8_S_contig10917:3070..3181Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10917 3071..3181 -
1681143181.1474748-CDS-Ecto-sp8_S_contig10917:3529..36391681143181.1474748-CDS-Ecto-sp8_S_contig10917:3529..3639Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10917 3530..3639 -
1681143181.1561086-CDS-Ecto-sp8_S_contig10917:4245..43581681143181.1561086-CDS-Ecto-sp8_S_contig10917:4245..4358Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10917 4246..4358 -
1681143181.1641808-CDS-Ecto-sp8_S_contig10917:4748..49011681143181.1641808-CDS-Ecto-sp8_S_contig10917:4748..4901Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10917 4749..4901 -
1681143181.1836355-CDS-Ecto-sp8_S_contig10917:5226..53901681143181.1836355-CDS-Ecto-sp8_S_contig10917:5226..5390Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10917 5227..5390 -
1681143181.1923516-CDS-Ecto-sp8_S_contig10917:6199..63731681143181.1923516-CDS-Ecto-sp8_S_contig10917:6199..6373Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10917 6200..6373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10917.1295.1

>prot_Ecto-sp8_S_contig10917.1295.1 ID=prot_Ecto-sp8_S_contig10917.1295.1|Name=mRNA_Ecto-sp8_S_contig10917.1295.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=332bp
MSDSKSPKGEDSHNQHNSSDSDIDVIFSDTDIVILNKPTGLRTVPGKAVG
PEAETRVHVEWHSGTKRQRQEFWTDVVHTACESLLHDEKTEGEEEFRDHL
RRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEV
GPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRE
RVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNESHT
NWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKA
KSDRLLLHARRISFPHPRTGEMVEFQCPPPF*
back to top

mRNA from alignment at Ecto-sp8_S_contig10917:1493..6382-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10917.1295.1 ID=mRNA_Ecto-sp8_S_contig10917.1295.1|Name=mRNA_Ecto-sp8_S_contig10917.1295.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4890bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10917:1493..6382- (Ectocarpus species8 EcLAC_412)
GCTACTGCCATGTCAGACAGCAAGTCTCCGAAGGGGGAAGACAGCCACAA
TCAACACAACAGCAGTGATAGTGATATAGATGTTATTTTCAGTGACACCG
ACATTGTAATACTCAACAAGCCTACAGGATTGAGGACTGTTCCAGGCAAG
GCGGTCGGACCGGAGGCTGAGACGAGGGTGCATGTGAGAGAGGAGCGAGA
GAGAGAGGGAGAGAGCATTACCCAGTCTTCGTTACTCGTGACTGCTGCAG
ACATCGATAAGGCGAAACAGGGTAGACGAAAAATATGTGTAGCTGGAAGG
CGCAGCCTTTGCGCTGATCCCCCCGCATGTTTCGAATGGCCACATGGCCA
CAGCCGGGGTTGCTTGGCACGTCGTGAGTCGTGAGTGAGATGGAGATGTA
TGTGCAGATGTGTGGGATGGTAGGGGATCCCCAGCTTAATGATTGAGAAC
GCCGGTCAAGGCAACTTGGATTGATCCGCTGCTGCTAATAACTGCTCACT
GCTGTCAACTGGTTTGCCGGTGCTCATGATGAGGGATACCTTCGGTGGCT
GTTGTGGCATACACGTCAAACCTTGCGGTGGCCTGCTGCCTGGGTTTGGC
GAGTCACTGCTACTGCACAGCACTTACTTGTAGCACAAGCACTCACTATG
ATAATAAGAAAAAATCTTCGTCTGCTGCAACACTACTGGACTCGCTCAGT
CGGCGACTGCTTCTCCCTGTGGGCATACGGATACATATACATACAAACGA
ACTACGCAGTTGTGACAATCAACAAGTCTAGACAGCGAACCTACCCAGAC
CAACCGCCTCATGTGTTGCGGCATATCATGAAACGCTGTGTTCCGGTACA
TATGTGTGTGTGCTTTTCATCCCATTTATTCTGGGCCCCGGTCTTCACCC
TTCCGTATGTGTTGACACACAAGCCTGGATCACACAGAAAGAGAAGTTAC
GAGCTGGGTGCATTGCTGTGTTGCGTGACATACATACAACAGGTGGAGTG
GCACAGCGGAACCAAGAGGCAAAGGCAGGAGTTTTGGACGGACGTGGTAC
ACACGGCATGCGAGTCACTTCTTCACGACGAGAAGACCGAAGGCGAAGAG
GAGTTTCGCGATCACCTGCGCCGTCTGACGAAGGAAAACAACGTCCCGAG
GAAAAGGTGAAACACGTGTGTGGTTCCTCTGCGTCATTGATCAAGGTCGA
GGACAGCGTTGTATTGTAACAGGTAGAGTTTTTATTCGAAACGGGCAGGT
TGTGCGGATTGGTTTCCTTTGCCTTTCGCCCCTAAGGCTCGGACGATATT
GTTAGTGCTGCTTCAGCTGCCTGCAACACGCTCTATATCGACCTGACCGT
GTGTAGGTAGGGTGTGGAGACCAGGGAAAGTCGGGGGGTGGCAAAGATGA
TGCAACCGAGACGGCATCAGGGGCTGGACACCGACTCTACCCTTGATTGT
CGCCCCCTCGCTTCTACGATCTGCCCGGCAGAAGCAAGTTTCACAACTAC
ACGGCGGTGACTCTCGGTCTGGAAGGAGAGGAAGGGGATAAGGTGTCCGC
TCGTCTGTGGGACACCGTCGACGGTCACCTCAAGAAAGAGGTCGGCCCCG
GAGTGGACTGCCTCTTGACGCGGGTGCAATCCAGGTGAGCTGGCGTCTGT
CGACACAACAACAAGTGCCCGGCCAGGCGCCGCACGCGTCGGCCGGTCGG
TTTGCGCCGTAAAGTGGCATGAAGGAGACAAGTGGGGAGCTAGGCGGAGA
CGGAGCAGCGAGCGATATACATACACGTGTTGTGACGACTTCACGCCAAG
CGTTTTTGTTTGTGGGTTGTTGTGCTGGGCGCAAGCATGGACGAGCTTCG
TACCAACCGTAGCTCGGCAGGTACAGTATCCCGTGAGCGAGCACACTTTT
GTGGGAGGTCTGCGGCACTAATTCTTTCATTGGTAGTGTACTGTCGATAG
CCGCTCTCTTTTTATCCCAAGCGTAAGCGTGCTTCTGTCCACGTGACACC
CGCGGCCTATATATATATGCCTAGGTGGCCCGAGGCCCGGCATGTCCATC
GTCTGGACCAAGACACTTCGGGACTGGTTGTAATGGCTCTGACGGTAGAG
GCGGCGAGGGAGATGTGCCGGCAGTTCCGCGAGCGGGGTGAGTTCTCTGC
GTGGCTTGGGGGCGGGAAGGGTTTGTTTACTCGCGGCGGATCGATCGGTC
TGGCCGTGGCATGGCGTGTCCTTCTATACACACAAGGAGATGTCTTGTCT
TTTCGAGAAGGCCTTGTAGAAAATCGATCTTGGAGTGGCGTTGCCGTGGT
TGACCACCAATCAAGGTGTTTCACAAGGTGCTTCACGGTAGATCAAAGGA
GTGATTATGGCGGAAACACCGGAGGCACACACAGAGGGAAGGAAGGTTGC
CGACAACGCTGGTTGGGTACGGTATCTACGTGATGTTGCTGACAGTTTAG
CACGGTCTCGAAGGAAGTACACGCAGACCAGGCTGATGTTCTCGTGGAAT
TCAGCCGGATCGGAAAATAAATGGTTGAAAGTCAATGTTCTGGTCGACAC
AATCGTTTCATTCACCGACGGCTTTTGGCGAAGACGGGCGACGGCCGCCT
CCCGTCAATGCTAGGGGTATGCGTTACATGGACGGAGACATTGACTCACC
CGTTTTCCTTGTTTTTCCGCACAAACGCACACGATCATTTATCATTTTGC
TGTTTCCGGTGGGTCCATCGTCGCTGTCGATCTCGCGCGGCAGTTCCTTC
CAAGACGTACACCGCGGTATTGGAAGGGAGGATGGCCAAAACGCCCAAGA
GCGGCGAAGTCACGGCCAAGCTGCGGCCTGATACCGACAATCGGCCTAAA
CAGGTGAACAGCATACACAAGCGTGAGACTCGCTCGATGTGGCGCGAGAA
CGATCGGCAAGTCCTTTGGCTTCTGATGGAATCGAAGATACCCCCGCGGA
AAACTCACGGCAACAGCTTGTTGCGCAGCGGACAACCCGTTGCAGCGCCC
CCTTTTTTCGTTTCCTCGGCGGGATACACACCCAATACATTGCATGACTT
CGTGGTTTGTGGCCGTCCCATGTCATCGACTGCACCCGTACATGGCTAGA
TATGTCACTTTTTTCTTGAAGATTCCACGTTCTACATGAGAGCACCAATA
GCATCGCTTTCTCTCTTGCCGCTGTGTTTTTGGTTCTCATGGTGACCGCA
GATGTTCTGCGAAGAGAAGGGGAACGAGTCGCACACGAATTGGGAGCGGA
TAAAACGGAAGGAGGACCGGACATGGGTGGACTTTACACCGGTAACGGGC
AGGACCCACCAGGTGCGCCCCTTGCTGTGAGATTTGCATGGGCGTAACCA
TACCCCCAAGAGTTATTTCTTTGTGTTTCGCGAAGAACGTGTGAGTTATG
TGTGGTAGGATCCCAGCTGATCTGGGCCTCAGACTACAGGCTTCGGTATG
TTTGGACGCGCCAGCCCATCGGGGTCACCCAGGGGAAAGGCACCGAGTGT
TTGGTTTGCTCACATGCATCAACAATCCAGGGGTACACAGGATTGCTTGT
TGAAACAGAGGGACAGGAAAAGTTGGGGGAAACGTTGGGGGGCCTCTAGG
GTTGTCACCAATTTCATCTGTCGCAACACCCGAACGCGGTTGCAGCAGCG
GTTTTACCATTGTGTCTTTGTTGTGGCGCCTCTCGTGTCTGTGTTTGATC
TATCTATCAGATCCGAATGCACGCTGTGCACCTCGGCCATCCAGTGATGG
GAGACTCCTTGTACGGCACACCCGAAGGAAAGGCTAAGTCGGACAGGCTG
CTGCTTCACGCGAGGAGGATATCCTTCCCGCACGTGAGTGAGCACCTGTG
AGGTACACACACAGGCGCCGTGGTTGCTAACGGTGGATCGTGTATTCCTC
AACAGTCTATGTATGGTTTGCTGTGCCGCTAGATACTTTACTGTGATGCG
GCTGCAGGCAGGCTATACTTGGCAGAATTGGGGGTGTTGCCTCTGGAGAC
AGCGATGATTGACTATGATCGTGCCGTAACTTCACCCCTCGGAGAGTTCG
CCTCGGTCGTGTCTGTCTCTGTCAGTTAGTTGTTTGGGTACAAGTCGTTT
TTTCGAGATAGACGAGACGAGGCGAACACCAAGATGCAACTAACTGCTGC
GGTGCTGCCATCGCTACCGCTCATGTCCAAGTCCTCCCTTTTGCCGTCGC
CTTTGTCTTGTCGCTCTCTGCCGTCTTGCGACTTGTTCAGCCGCGAACTG
GCGAAATGGTCGAGTTTCAATGCCCTCCGCCATTTTAACGACAAGGAACA
CTTAGGGCGTGGACCACAGACCACAGATTGATTGCCACCGGAGTAGACTA
GTCGTCGCGCTTGGCGCAAGGAGCTGCTGTGGTTATCCCTAGAAGGAACC
TGCTGTGGTTGTCCCAAGGAGGAACCGGAGTGTTGAATATGGCGACAACA
CGCCCCCAGCAACGAGTGCGGCTCACGCCGGAGTGATACAGAGGAAGGGG
GTGCGACAAGCGGGAATGTTGCGAGTCTGTCGTTGTGAAGCATAATGACG
ATCCTTCGTATAGTACAGGTACCCGCTCTGGGGAGTAGTGCCGTGCAAAT
GGCGCGCGAGTTTAAGTGGGAGGAGCTCATGTGCCACGCATTTTGCGTTC
CTCAGACAAAGAGGAGGGAGTGAGTGTTGGGATTGGAAGACCGCCTTGCG
TGGCTGTGCTCATGTGGCTACTGGCTACGCCACCGTGCACCTGCTGTACG
ATGCCGCCGTGCGCCTGTGCGTACTGCCTTGTCGCAGCCGCTTAAGGGGG
GACTCGCGATTTCATTTAATTGTGGCACATCCGACTCCATTTGCCCACGT
GTGAGTGAATCGAAATCCCACGTTTCATGTTCAACAACGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10917:1493..6382-

>mRNA_Ecto-sp8_S_contig10917.1295.1 ID=mRNA_Ecto-sp8_S_contig10917.1295.1|Name=mRNA_Ecto-sp8_S_contig10917.1295.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=996bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10917:1493..6382- (Ectocarpus species8 EcLAC_412)
ATGTCAGACAGCAAGTCTCCGAAGGGGGAAGACAGCCACAATCAACACAA
CAGCAGTGATAGTGATATAGATGTTATTTTCAGTGACACCGACATTGTAA
TACTCAACAAGCCTACAGGATTGAGGACTGTTCCAGGCAAGGCGGTCGGA
CCGGAGGCTGAGACGAGGGTGCATGTGGAGTGGCACAGCGGAACCAAGAG
GCAAAGGCAGGAGTTTTGGACGGACGTGGTACACACGGCATGCGAGTCAC
TTCTTCACGACGAGAAGACCGAAGGCGAAGAGGAGTTTCGCGATCACCTG
CGCCGTCTGACGAAGGAAAACAACGTCCCGAGGAAAAGAAGCAAGTTTCA
CAACTACACGGCGGTGACTCTCGGTCTGGAAGGAGAGGAAGGGGATAAGG
TGTCCGCTCGTCTGTGGGACACCGTCGACGGTCACCTCAAGAAAGAGGTC
GGCCCCGGAGTGGACTGCCTCTTGACGCGGGTGCAATCCAGGTGGCCCGA
GGCCCGGCATGTCCATCGTCTGGACCAAGACACTTCGGGACTGGTTGTAA
TGGCTCTGACGGTAGAGGCGGCGAGGGAGATGTGCCGGCAGTTCCGCGAG
CGGGTTCCTTCCAAGACGTACACCGCGGTATTGGAAGGGAGGATGGCCAA
AACGCCCAAGAGCGGCGAAGTCACGGCCAAGCTGCGGCCTGATACCGACA
ATCGGCCTAAACAGATGTTCTGCGAAGAGAAGGGGAACGAGTCGCACACG
AATTGGGAGCGGATAAAACGGAAGGAGGACCGGACATGGGTGGACTTTAC
ACCGGTAACGGGCAGGACCCACCAGATCCGAATGCACGCTGTGCACCTCG
GCCATCCAGTGATGGGAGACTCCTTGTACGGCACACCCGAAGGAAAGGCT
AAGTCGGACAGGCTGCTGCTTCACGCGAGGAGGATATCCTTCCCGCACCC
GCGAACTGGCGAAATGGTCGAGTTTCAATGCCCTCCGCCATTTTAA
back to top